Wall clock time and date at job start Tue Mar 31 2020 21:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00231 * 2 1 4 4 O 1.20831 * 119.99873 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00305 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47146 * 180.02562 * 5 3 2 7 7 C 1.53008 * 109.47172 * 60.00253 * 6 5 3 8 8 N 1.46499 * 109.47340 * 180.02562 * 6 5 3 9 9 C 1.34784 * 119.99646 * 65.32652 * 8 6 5 10 10 O 1.21277 * 119.99718 * 354.78746 * 9 8 6 11 11 C 1.50696 * 119.99657 * 174.78085 * 9 8 6 12 12 S 1.81005 * 109.46772 * 180.02562 * 11 9 8 13 13 C 1.76201 * 99.99983 * 180.02562 * 12 11 9 14 14 H 1.07998 * 119.99654 * 0.02562 * 13 12 11 15 15 C 1.38800 * 120.00054 * 180.02562 * 13 12 11 16 16 N 1.31632 * 119.99852 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99997 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47039 * 60.00177 * 17 15 13 19 19 H 1.48494 * 109.46975 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47166 * 300.00185 * 17 15 13 21 21 C 1.50702 * 109.47425 * 300.00472 * 6 5 3 22 22 C 1.38224 * 119.61922 * 178.71870 * 21 6 5 23 23 C 1.38634 * 119.16250 * 179.97438 * 22 21 6 24 24 C 1.38673 * 118.41750 * 359.97438 * 23 22 21 25 25 C 1.38183 * 119.16427 * 0.02562 * 24 23 22 26 26 N 1.31857 * 119.61764 * 358.44355 * 21 6 5 27 27 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46672 * 299.99605 * 1 2 3 29 29 H 1.09000 * 109.46655 * 59.99654 * 1 2 3 30 30 H 1.09005 * 109.46556 * 60.00634 * 5 3 2 31 31 H 1.08995 * 109.47111 * 300.00898 * 5 3 2 32 32 H 1.09000 * 109.46886 * 179.97438 * 7 6 5 33 33 H 1.08994 * 109.47051 * 300.00044 * 7 6 5 34 34 H 1.09001 * 109.46422 * 59.99824 * 7 6 5 35 35 H 0.96997 * 120.00284 * 245.05406 * 8 6 5 36 36 H 1.08998 * 109.47448 * 300.00007 * 11 9 8 37 37 H 1.08998 * 109.47387 * 60.00728 * 11 9 8 38 38 H 0.96999 * 119.99801 * 179.97438 * 16 15 13 39 39 H 1.08000 * 120.41940 * 359.97438 * 22 21 6 40 40 H 1.07992 * 120.79200 * 180.02562 * 23 22 21 41 41 H 1.08000 * 120.41840 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.61636 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 6 3.4527 3.4353 1.2504 8 7 5.4632 2.8188 0.0011 9 6 6.1616 2.3678 -1.0599 10 8 5.5871 1.8131 -1.9726 11 6 7.6562 2.5531 -1.1119 12 16 8.2983 1.8476 -2.6501 13 6 10.0148 2.1931 -2.4521 14 1 10.3645 2.7011 -1.5655 15 6 10.9173 1.8123 -3.4354 16 7 10.4909 1.1935 -4.5162 17 14 12.7369 2.1792 -3.2258 18 1 13.2388 1.5092 -1.9993 19 1 13.4829 1.6736 -4.4060 20 1 12.9354 3.6459 -3.1051 21 6 3.4617 3.4256 -1.2293 22 6 3.7084 4.7713 -1.4264 23 6 3.2090 5.3904 -2.5618 24 6 2.4774 4.6292 -3.4609 25 6 2.2714 3.2886 -3.1968 26 7 2.7654 2.7317 -2.1082 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 3.9564 0.7806 -0.8893 31 1 3.9558 0.7808 0.8907 32 1 3.7621 4.4805 1.2510 33 1 2.3643 3.3782 1.2500 34 1 3.8422 2.9409 2.1403 35 1 5.9290 3.1977 0.7628 36 1 7.8920 3.6166 -1.0742 37 1 8.1147 2.0488 -0.2613 38 1 11.1216 0.9278 -5.2035 39 1 4.2829 5.3333 -0.7049 40 1 3.3863 6.4403 -2.7423 41 1 2.0737 5.0785 -4.3562 42 1 1.7023 2.6890 -3.8918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362873133.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:33 Heat of formation + Delta-G solvation = -96.163796 kcal Electronic energy + Delta-G solvation = -27506.300541 eV Core-core repulsion = 23577.566468 eV Total energy + Delta-G solvation = -3928.734073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.25015 -40.91502 -40.20127 -37.85757 -36.73012 -34.57019 -33.66156 -33.09839 -31.49947 -30.44028 -29.55800 -27.94004 -27.63873 -25.01831 -24.25397 -22.87381 -22.06845 -20.81556 -19.83540 -18.86894 -18.21475 -17.79328 -17.47468 -17.18060 -17.00194 -16.86764 -16.82106 -16.23970 -16.07301 -15.67257 -15.14434 -14.85208 -14.60467 -14.56602 -14.38160 -14.13756 -13.84778 -13.72528 -13.43106 -13.15130 -13.08070 -12.91144 -12.85903 -12.79708 -12.60357 -12.50654 -12.18913 -11.73635 -11.66969 -11.34009 -11.11577 -10.82925 -10.65873 -10.52659 -10.24070 -10.11494 -9.80603 -8.63576 -8.33184 -6.10349 0.22679 0.47161 1.27535 1.34957 1.44204 1.46825 1.55637 1.61854 1.83403 2.28170 2.34703 2.99110 3.00939 3.24232 3.36283 3.52829 3.74821 3.92836 4.03558 4.08413 4.16799 4.29709 4.31122 4.33155 4.34542 4.35507 4.45634 4.54418 4.65155 4.70293 4.71126 4.80574 4.89922 4.93949 5.19087 5.25001 5.30173 5.39848 5.42988 5.58564 5.85470 6.20841 6.53772 6.88055 7.08245 7.17056 7.28935 8.75563 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016182 B = 0.003073 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.916433 B = 9110.029131 C = 9620.385982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.373 6.373 3 C 0.488 3.512 4 O -0.517 6.517 5 C -0.116 4.116 6 C 0.242 3.758 7 C -0.157 4.157 8 N -0.703 5.703 9 C 0.533 3.467 10 O -0.539 6.539 11 C -0.128 4.128 12 S -0.149 6.149 13 C -0.546 4.546 14 H 0.083 0.917 15 C 0.013 3.987 16 N -0.912 5.912 17 Si 0.996 3.004 18 H -0.261 1.261 19 H -0.281 1.281 20 H -0.262 1.262 21 C 0.130 3.870 22 C -0.173 4.173 23 C -0.084 4.084 24 C -0.179 4.179 25 C 0.077 3.923 26 N -0.486 5.486 27 H 0.125 0.875 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.424 0.576 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.270 0.730 39 H 0.150 0.850 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.118 6.663 14.116 23.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.290 6.290 3 C 0.332 3.668 4 O -0.406 6.406 5 C -0.155 4.155 6 C 0.154 3.846 7 C -0.215 4.215 8 N -0.359 5.359 9 C 0.319 3.681 10 O -0.414 6.414 11 C -0.280 4.280 12 S 0.078 5.922 13 C -0.694 4.694 14 H 0.101 0.899 15 C -0.191 4.191 16 N -0.549 5.549 17 Si 0.818 3.182 18 H -0.186 1.186 19 H -0.206 1.206 20 H -0.187 1.187 21 C -0.009 4.009 22 C -0.193 4.193 23 C -0.110 4.110 24 C -0.199 4.199 25 C -0.080 4.080 26 N -0.195 5.195 27 H 0.143 0.857 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.144 0.856 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.263 0.737 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.079 0.921 39 H 0.168 0.832 40 H 0.178 0.822 41 H 0.175 0.825 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -19.411 5.077 12.597 23.691 hybrid contribution 1.787 1.544 0.477 2.410 sum -17.624 6.621 13.075 22.921 Atomic orbital electron populations 1.23432 0.75058 1.05197 1.02234 1.86491 1.24860 1.33453 1.84219 1.23200 0.91631 0.81115 0.70866 1.90534 1.67492 1.36338 1.46205 1.21613 0.88459 0.98929 1.06505 1.18777 0.79627 0.92513 0.93672 1.22337 1.03593 1.01666 0.93871 1.45854 1.04962 1.64567 1.20529 1.20125 0.88561 0.77392 0.82029 1.90745 1.71116 1.41414 1.38135 1.23372 0.94681 1.05970 1.03948 1.85616 1.05974 1.77299 1.23264 1.23184 0.92449 1.44638 1.09112 0.89887 1.26110 1.04980 0.94123 0.93925 1.70182 1.37178 1.38483 1.09021 0.85034 0.75903 0.79124 0.78135 1.18578 1.20577 1.18668 1.21181 0.93792 0.91329 0.94590 1.22071 1.01807 0.95489 0.99965 1.21906 0.94520 1.01584 0.92955 1.22375 1.00674 0.95255 1.01552 1.22945 0.97016 0.93925 0.94106 1.67198 1.09048 1.40154 1.03097 0.85652 0.91402 0.92896 0.88478 0.85621 0.89653 0.89682 0.88676 0.73709 0.87439 0.86982 0.92088 0.83224 0.82239 0.82530 0.82468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.80 16 2 O -0.37 -9.44 10.57 -51.39 -0.54 -9.98 16 3 C 0.49 13.28 6.53 71.24 0.47 13.74 16 4 O -0.52 -15.05 11.56 21.95 0.25 -14.79 16 5 C -0.12 -3.10 4.49 29.85 0.13 -2.96 16 6 C 0.24 5.84 0.61 2.86 0.00 5.84 16 7 C -0.16 -2.61 8.09 71.98 0.58 -2.03 16 8 N -0.70 -16.52 4.96 -426.32 -2.12 -18.63 16 9 C 0.53 18.65 7.25 87.65 0.64 19.29 16 10 O -0.54 -23.93 13.02 -3.02 -0.04 -23.97 16 11 C -0.13 -4.87 6.16 71.23 0.44 -4.43 16 12 S -0.15 -8.13 20.57 -56.49 -1.16 -9.29 16 13 C -0.55 -30.81 9.50 67.95 0.65 -30.17 16 14 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 15 C 0.01 0.75 5.49 84.86 0.47 1.22 16 16 N -0.91 -56.05 13.22 21.65 0.29 -55.76 16 17 Si 1.00 43.29 29.55 68.60 2.03 45.32 16 18 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 20 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 21 C 0.13 3.85 3.19 42.55 0.14 3.99 16 22 C -0.17 -4.45 9.10 22.36 0.20 -4.25 16 23 C -0.08 -1.99 10.18 22.47 0.23 -1.76 16 24 C -0.18 -4.43 10.11 22.36 0.23 -4.21 16 25 C 0.08 2.30 11.18 84.67 0.95 3.24 16 26 N -0.49 -16.30 6.94 -183.89 -1.28 -17.58 16 27 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.07 8.13 -2.39 -0.02 1.05 16 29 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 30 H 0.10 3.38 6.28 -2.38 -0.01 3.37 16 31 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.08 1.12 7.30 -2.39 -0.02 1.10 16 33 H 0.08 1.76 5.52 -2.39 -0.01 1.74 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.42 6.42 8.48 -92.71 -0.79 5.63 16 36 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 37 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 38 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.15 2.97 7.50 -2.91 -0.02 2.94 16 40 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 41 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 42 H 0.16 4.05 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -82.96 366.51 4.01 -78.96 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.27 Total: 26.41 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 6.31 Total: -0.67 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -3.11 Total: -91.97 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -0.33 Total: -48.74 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -82.96 4.01 -78.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362873133.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.204 kcal (2) G-P(sol) polarization free energy of solvation -82.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds