Wall clock time and date at job start Tue Mar 31 2020 21:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47280 * 2 1 4 4 H 1.08998 * 109.47172 * 55.00514 * 3 2 1 5 5 C 1.47208 * 109.47025 * 175.00183 * 3 2 1 6 6 N 3.43552 * 154.82736 * 8.42836 * 2 1 3 7 7 S 1.81401 * 109.47321 * 295.00150 * 3 2 1 8 8 O 1.42097 * 110.54072 * 74.01160 * 7 3 2 9 9 O 1.42107 * 110.54191 * 297.26555 * 7 3 2 10 10 N 1.65597 * 104.45093 * 185.63977 * 7 3 2 11 11 C 1.39663 * 119.99828 * 298.83189 * 10 7 3 12 12 C 1.38967 * 120.04540 * 313.94007 * 11 10 7 13 13 C 1.38122 * 120.03646 * 179.97438 * 12 11 10 14 14 C 1.38218 * 120.12291 * 359.74814 * 13 12 11 15 15 C 1.38768 * 120.09467 * 0.50817 * 14 13 12 16 16 O 1.35903 * 120.01648 * 179.76885 * 15 14 13 17 17 C 1.42900 * 117.00306 * 359.72256 * 16 15 14 18 18 C 1.52996 * 109.47342 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.46967 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00260 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99629 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00361 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99948 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46983 * 89.99296 * 23 21 19 25 25 H 1.48497 * 109.47185 * 209.99533 * 23 21 19 26 26 H 1.48503 * 109.47012 * 330.00192 * 23 21 19 27 27 C 1.38612 * 119.96413 * 359.49342 * 15 14 13 28 28 H 1.09000 * 109.46681 * 299.99944 * 1 2 3 29 29 H 1.09003 * 109.47240 * 59.99763 * 1 2 3 30 30 H 1.08992 * 109.47006 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46987 * 240.00310 * 2 1 3 32 32 H 1.09003 * 109.47240 * 120.00237 * 2 1 3 33 33 H 0.96998 * 119.99696 * 118.82959 * 10 7 3 34 34 H 1.07997 * 119.98535 * 359.96143 * 12 11 10 35 35 H 1.07999 * 119.93651 * 180.02562 * 13 12 11 36 36 H 1.08007 * 119.95337 * 180.27741 * 14 13 12 37 37 H 1.08999 * 109.47056 * 300.00774 * 17 16 15 38 38 H 1.09003 * 109.46900 * 59.99999 * 17 16 15 39 39 H 1.09007 * 109.47026 * 300.00191 * 18 17 16 40 40 H 1.09003 * 109.47016 * 60.00202 * 18 17 16 41 41 H 0.96996 * 120.00376 * 179.97438 * 22 21 19 42 42 H 1.08000 * 120.06284 * 180.27891 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5072 1.4442 0.1209 6 7 4.6393 1.4455 0.2142 7 16 1.5602 2.2536 -1.5500 8 8 0.1714 2.5544 -1.5461 9 8 2.1664 1.6059 -2.6602 10 7 2.2990 3.7343 -1.4875 11 6 1.9826 4.6299 -0.4638 12 6 0.6543 4.8591 -0.1256 13 6 0.3415 5.7445 0.8873 14 6 1.3481 6.4007 1.5703 15 6 2.6761 6.1799 1.2335 16 8 3.6643 6.8295 1.9031 17 6 3.2637 7.7298 2.9379 18 6 4.5040 8.3614 3.5730 19 6 4.0814 9.3104 4.6647 20 1 3.0330 9.4494 4.8834 21 6 5.0333 10.0019 5.3837 22 7 6.3100 9.8329 5.1171 23 14 4.5095 11.1787 6.7365 24 1 4.4267 10.4458 8.0254 25 1 5.5056 12.2739 6.8529 26 1 3.1798 11.7517 6.4067 27 6 2.9942 5.2921 0.2177 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 2.9516 3.9794 -2.1620 34 1 -0.1340 4.3447 -0.6552 35 1 -0.6913 5.9211 1.1490 36 1 1.1006 7.0891 2.3649 37 1 2.6332 8.5120 2.5151 38 1 2.7047 7.1840 3.6981 39 1 5.1341 7.5789 3.9960 40 1 5.0634 8.9072 2.8131 41 1 6.9796 10.3197 5.6226 42 1 4.0274 5.1157 -0.0428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416939637.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:30 Heat of formation + Delta-G solvation = -62.292059 kcal Electronic energy + Delta-G solvation = -26417.686591 eV Core-core repulsion = 22490.421306 eV Total energy + Delta-G solvation = -3927.265285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.09748 -38.11309 -37.85951 -37.47654 -36.67396 -35.25831 -34.80650 -33.42331 -31.02950 -29.63104 -29.11150 -28.81606 -25.15386 -23.05283 -22.89353 -22.42506 -20.82459 -20.33366 -19.20647 -18.43332 -18.09246 -17.50765 -16.58773 -16.23501 -15.76768 -15.70086 -15.44670 -15.30641 -14.97807 -14.53516 -14.45301 -14.07695 -13.91962 -13.79610 -13.33561 -13.26222 -12.96001 -12.84065 -12.76948 -12.65014 -12.37130 -12.36674 -12.17738 -11.91692 -11.81892 -11.65444 -11.40522 -11.07399 -10.99777 -10.86328 -10.72174 -10.55918 -9.95605 -9.72870 -9.36504 -8.72482 -8.49981 -8.05462 -6.15272 -4.20492 -0.61694 1.17562 1.43415 1.82091 2.16869 2.35417 2.85207 2.98686 3.23851 3.29998 3.32482 3.64400 3.65135 3.72588 3.88036 4.19618 4.36197 4.49279 4.64516 4.65761 4.88755 4.96096 5.15616 5.21284 5.22202 5.29105 5.31710 5.45286 5.61484 5.65116 5.78339 5.92484 5.93612 6.18227 6.37053 6.42392 6.47930 6.60255 6.82297 6.90166 7.41988 7.56686 7.71982 7.93968 8.17138 8.85099 9.44259 10.96250 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.020784 B = 0.002318 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.874649 B =12074.402356 C =12443.542567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.108 4.108 3 C -0.496 4.496 4 H 0.180 0.820 5 C 0.207 3.793 6 N -0.371 5.371 7 S 2.625 3.375 8 O -0.920 6.920 9 O -0.935 6.935 10 N -1.051 6.051 11 C 0.162 3.838 12 C -0.201 4.201 13 C -0.057 4.057 14 C -0.214 4.214 15 C 0.163 3.837 16 O -0.313 6.313 17 C 0.064 3.936 18 C 0.025 3.975 19 C -0.528 4.528 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.272 1.272 27 C -0.171 4.171 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.429 0.571 34 H 0.156 0.844 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.264 0.736 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.713 -18.645 -12.484 26.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.148 4.148 3 C -0.604 4.604 4 H 0.197 0.803 5 C -0.113 4.113 6 N -0.048 5.048 7 S 2.713 3.287 8 O -0.909 6.909 9 O -0.925 6.925 10 N -0.803 5.803 11 C 0.067 3.933 12 C -0.223 4.223 13 C -0.076 4.076 14 C -0.234 4.234 15 C 0.115 3.885 16 O -0.225 6.225 17 C -0.010 4.010 18 C -0.012 4.012 19 C -0.566 4.566 20 H 0.077 0.923 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.727 3.273 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.194 4.194 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.268 0.732 34 H 0.173 0.827 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.249 -19.010 -12.905 26.523 hybrid contribution -0.026 0.998 1.341 1.671 sum -13.275 -18.012 -11.565 25.188 Atomic orbital electron populations 1.22193 0.92911 1.04536 1.04365 1.21448 0.97631 0.89342 1.06363 1.28495 0.91357 1.12741 1.27828 0.80261 1.27146 0.92768 0.95422 0.95971 1.81330 1.11344 1.06160 1.05919 1.05264 0.75060 0.73029 0.75343 1.93622 1.29846 1.81833 1.85635 1.93651 1.77871 1.74606 1.46333 1.53187 1.59985 1.30833 1.36315 1.17004 0.92827 0.93923 0.89547 1.21664 0.94788 1.03438 1.02360 1.20835 0.99154 0.93880 0.93690 1.21544 0.92096 1.05251 1.04487 1.18954 0.87947 0.90789 0.90847 1.86202 1.32486 1.55444 1.48404 1.23403 1.01821 0.89545 0.86215 1.19134 0.91106 0.95629 0.95357 1.20951 0.93215 1.24831 1.17605 0.92307 1.24995 0.94828 0.96925 0.97431 1.69969 0.99984 1.41983 1.40755 0.86480 0.78453 0.80491 0.81918 1.20477 1.21026 1.19722 1.20338 0.99667 1.01302 0.98051 0.90467 0.91135 0.90062 0.89224 0.88143 0.73243 0.82671 0.85043 0.84645 0.92822 0.92887 0.95405 0.95358 0.92640 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.77 9.62 37.16 0.36 -0.41 16 2 C -0.11 -0.53 5.36 -26.73 -0.14 -0.67 16 3 C -0.50 -3.40 2.64 -29.51 -0.08 -3.48 16 4 H 0.18 0.82 8.14 -51.93 -0.42 0.40 16 5 C 0.21 2.08 14.37 -20.76 -0.30 1.78 16 6 N -0.37 -4.82 18.54 42.15 0.78 -4.04 16 7 S 2.62 22.42 4.26 -107.50 -0.46 21.96 16 8 O -0.92 -8.62 13.34 -57.54 -0.77 -9.39 16 9 O -0.93 -10.22 18.06 -57.54 -1.04 -11.26 16 10 N -1.05 -9.56 5.39 32.40 0.17 -9.38 16 11 C 0.16 1.79 6.02 -83.82 -0.50 1.29 16 12 C -0.20 -2.13 9.23 -39.35 -0.36 -2.50 16 13 C -0.06 -0.61 10.03 -39.63 -0.40 -1.01 16 14 C -0.21 -2.87 9.04 -39.39 -0.36 -3.23 16 15 C 0.16 2.55 6.68 -39.25 -0.26 2.28 16 16 O -0.31 -6.03 10.13 -19.43 -0.20 -6.22 16 17 C 0.06 1.29 4.68 37.16 0.17 1.47 16 18 C 0.02 0.63 5.34 -27.89 -0.15 0.48 16 19 C -0.53 -14.34 9.11 -34.44 -0.31 -14.65 16 20 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 23 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C -0.17 -2.30 9.91 -39.24 -0.39 -2.69 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.35 5.88 -51.93 -0.31 0.05 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.43 3.26 8.92 -34.46 -0.31 2.95 16 34 H 0.16 1.49 5.63 -52.49 -0.30 1.20 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.14 1.77 6.29 -52.48 -0.33 1.44 16 37 H 0.05 1.02 7.67 -51.93 -0.40 0.62 16 38 H 0.05 1.00 7.65 -51.93 -0.40 0.60 16 39 H 0.03 0.76 8.14 -51.92 -0.42 0.33 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -33.96 372.54 -8.38 -42.34 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.38 Total: -0.35 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -2.82 Total: -19.74 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 1.69 Total: -38.82 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -2.00 Total: -26.87 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 22.42 SS G_CDS: -0.46 Total: 21.96 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.96 -8.38 -42.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416939637.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.957 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds