Wall clock time and date at job start Tue Mar 31 2020 21:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47280 * 2 1 4 4 H 1.08998 * 109.47172 * 55.00514 * 3 2 1 5 5 C 1.47208 * 109.47025 * 175.00183 * 3 2 1 6 6 N 3.43552 * 154.82736 * 8.42836 * 2 1 3 7 7 S 1.81401 * 109.47321 * 295.00150 * 3 2 1 8 8 O 1.42097 * 110.54072 * 74.01160 * 7 3 2 9 9 O 1.42107 * 110.54191 * 297.26555 * 7 3 2 10 10 N 1.65597 * 104.45093 * 185.63977 * 7 3 2 11 11 C 1.39663 * 119.99828 * 298.83189 * 10 7 3 12 12 C 1.38967 * 120.04540 * 313.94007 * 11 10 7 13 13 C 1.38122 * 120.03646 * 179.97438 * 12 11 10 14 14 C 1.38218 * 120.12291 * 359.74814 * 13 12 11 15 15 C 1.38768 * 120.09467 * 0.50817 * 14 13 12 16 16 O 1.35903 * 120.01648 * 179.76885 * 15 14 13 17 17 C 1.42900 * 117.00306 * 359.72256 * 16 15 14 18 18 C 1.52996 * 109.47342 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.46967 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00260 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99629 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00361 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99948 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46983 * 89.99296 * 23 21 19 25 25 H 1.48497 * 109.47185 * 209.99533 * 23 21 19 26 26 H 1.48503 * 109.47012 * 330.00192 * 23 21 19 27 27 C 1.38612 * 119.96413 * 359.49342 * 15 14 13 28 28 H 1.09000 * 109.46681 * 299.99944 * 1 2 3 29 29 H 1.09003 * 109.47240 * 59.99763 * 1 2 3 30 30 H 1.08992 * 109.47006 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46987 * 240.00310 * 2 1 3 32 32 H 1.09003 * 109.47240 * 120.00237 * 2 1 3 33 33 H 0.96998 * 119.99696 * 118.82959 * 10 7 3 34 34 H 1.07997 * 119.98535 * 359.96143 * 12 11 10 35 35 H 1.07999 * 119.93651 * 180.02562 * 13 12 11 36 36 H 1.08007 * 119.95337 * 180.27741 * 14 13 12 37 37 H 1.08999 * 109.47056 * 300.00774 * 17 16 15 38 38 H 1.09003 * 109.46900 * 59.99999 * 17 16 15 39 39 H 1.09007 * 109.47026 * 300.00191 * 18 17 16 40 40 H 1.09003 * 109.47016 * 60.00202 * 18 17 16 41 41 H 0.96996 * 120.00376 * 179.97438 * 22 21 19 42 42 H 1.08000 * 120.06284 * 180.27891 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5072 1.4442 0.1209 6 7 4.6393 1.4455 0.2142 7 16 1.5602 2.2536 -1.5500 8 8 0.1714 2.5544 -1.5461 9 8 2.1664 1.6059 -2.6602 10 7 2.2990 3.7343 -1.4875 11 6 1.9826 4.6299 -0.4638 12 6 0.6543 4.8591 -0.1256 13 6 0.3415 5.7445 0.8873 14 6 1.3481 6.4007 1.5703 15 6 2.6761 6.1799 1.2335 16 8 3.6643 6.8295 1.9031 17 6 3.2637 7.7298 2.9379 18 6 4.5040 8.3614 3.5730 19 6 4.0814 9.3104 4.6647 20 1 3.0330 9.4494 4.8834 21 6 5.0333 10.0019 5.3837 22 7 6.3100 9.8329 5.1171 23 14 4.5095 11.1787 6.7365 24 1 4.4267 10.4458 8.0254 25 1 5.5056 12.2739 6.8529 26 1 3.1798 11.7517 6.4067 27 6 2.9942 5.2921 0.2177 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 2.9516 3.9794 -2.1620 34 1 -0.1340 4.3447 -0.6552 35 1 -0.6913 5.9211 1.1490 36 1 1.1006 7.0891 2.3649 37 1 2.6332 8.5120 2.5151 38 1 2.7047 7.1840 3.6981 39 1 5.1341 7.5789 3.9960 40 1 5.0634 8.9072 2.8131 41 1 6.9796 10.3197 5.6226 42 1 4.0274 5.1157 -0.0428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416939637.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:30 Heat of formation + Delta-G solvation = -85.313488 kcal Electronic energy + Delta-G solvation = -26418.684875 eV Core-core repulsion = 22490.421306 eV Total energy + Delta-G solvation = -3928.263569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.20640 -39.21876 -38.66498 -38.29443 -37.43242 -35.98880 -35.69724 -35.34038 -32.61316 -30.99618 -29.86220 -29.56715 -27.00917 -24.10896 -23.64484 -23.38041 -22.34525 -21.10535 -20.11983 -19.32366 -18.99396 -18.35915 -18.15100 -17.31009 -16.96265 -16.90249 -16.78466 -16.41027 -16.12827 -15.62740 -14.99023 -14.84485 -14.73852 -14.62888 -14.51183 -14.41278 -14.33073 -13.94276 -13.62753 -13.57258 -13.53590 -13.25861 -13.16204 -12.84455 -12.74988 -12.72964 -12.54343 -12.37304 -12.21381 -12.15444 -11.83994 -11.61779 -11.55741 -11.39622 -11.35266 -10.62397 -9.67370 -9.15728 -8.26877 -6.40544 -1.33393 0.22202 0.42424 1.06197 1.38556 1.41572 1.43547 1.54683 1.56296 2.12050 2.23610 2.32626 2.51872 2.67477 3.03497 3.08112 3.28868 3.75643 3.80997 3.91925 4.13773 4.15318 4.22884 4.26684 4.29609 4.33047 4.53891 4.60137 4.65150 4.75509 4.95546 5.01730 5.02487 5.26850 5.32461 5.38587 5.39248 5.46802 5.52057 5.63738 5.70320 5.91503 6.06931 6.10814 6.52495 6.75152 7.30047 8.86320 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.020784 B = 0.002318 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.874649 B =12074.402356 C =12443.542567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.112 4.112 3 C -0.489 4.489 4 H 0.209 0.791 5 C 0.228 3.772 6 N -0.427 5.427 7 S 2.637 3.363 8 O -0.924 6.924 9 O -0.959 6.959 10 N -1.053 6.053 11 C 0.174 3.826 12 C -0.190 4.190 13 C -0.045 4.045 14 C -0.220 4.220 15 C 0.128 3.872 16 O -0.342 6.342 17 C 0.084 3.916 18 C 0.026 3.974 19 C -0.543 4.543 20 H 0.075 0.925 21 C 0.000 4.000 22 N -0.933 5.933 23 Si 0.976 3.024 24 H -0.270 1.270 25 H -0.284 1.284 26 H -0.257 1.257 27 C -0.181 4.181 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.435 0.565 34 H 0.174 0.826 35 H 0.168 0.832 36 H 0.138 0.862 37 H 0.066 0.934 38 H 0.067 0.933 39 H -0.004 1.004 40 H -0.004 1.004 41 H 0.266 0.734 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.220 -19.276 -12.042 29.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.152 4.152 3 C -0.599 4.599 4 H 0.225 0.775 5 C -0.091 4.091 6 N -0.104 5.104 7 S 2.727 3.273 8 O -0.913 6.913 9 O -0.949 6.949 10 N -0.805 5.805 11 C 0.078 3.922 12 C -0.211 4.211 13 C -0.063 4.063 14 C -0.239 4.239 15 C 0.081 3.919 16 O -0.256 6.256 17 C 0.009 3.991 18 C -0.011 4.011 19 C -0.581 4.581 20 H 0.093 0.907 21 C -0.199 4.199 22 N -0.573 5.573 23 Si 0.799 3.201 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.180 1.180 27 C -0.204 4.204 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.134 0.866 33 H 0.274 0.726 34 H 0.191 0.809 35 H 0.185 0.815 36 H 0.156 0.844 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.014 0.986 40 H 0.014 0.986 41 H 0.075 0.925 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.783 -19.648 -12.510 28.708 hybrid contribution 1.004 1.048 1.079 1.808 sum -15.779 -18.600 -11.431 26.937 Atomic orbital electron populations 1.22275 0.91962 1.05756 1.04477 1.21620 0.98419 0.87747 1.07386 1.28676 0.89280 1.14554 1.27425 0.77459 1.27643 0.93341 0.93738 0.94342 1.81355 1.13168 1.08100 1.07794 1.04850 0.74582 0.72478 0.75386 1.93609 1.29927 1.81836 1.85948 1.93628 1.78301 1.74881 1.48112 1.53245 1.60212 1.31031 1.35997 1.16969 0.92608 0.93409 0.89225 1.21949 0.94625 1.02720 1.01819 1.21205 1.00194 0.92431 0.92480 1.21656 0.91530 1.05741 1.04986 1.19245 0.88328 0.92214 0.92065 1.86103 1.34458 1.56214 1.48862 1.22917 0.98846 0.90270 0.87022 1.18979 0.92827 0.94639 0.94681 1.21413 0.94060 1.24843 1.17787 0.90734 1.26061 0.94710 0.98890 1.00199 1.70124 1.01444 1.43389 1.42328 0.85289 0.78539 0.77826 0.78440 1.19575 1.20943 1.18031 1.20369 1.00075 1.01698 0.98247 0.89308 0.92024 0.88465 0.88921 0.86579 0.72609 0.80927 0.81467 0.84440 0.91613 0.91500 0.98602 0.98552 0.92524 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.98 9.62 71.98 0.69 -0.29 16 2 C -0.11 -0.80 5.36 30.59 0.16 -0.64 16 3 C -0.49 -5.62 2.64 28.79 0.08 -5.54 16 4 H 0.21 1.22 8.14 -2.39 -0.02 1.20 16 5 C 0.23 4.41 14.37 89.44 1.29 5.70 16 6 N -0.43 -11.22 18.54 20.01 0.37 -10.85 16 7 S 2.64 40.07 4.26 -56.49 -0.24 39.83 16 8 O -0.92 -14.70 13.34 -127.65 -1.70 -16.40 16 9 O -0.96 -19.96 18.06 -127.65 -2.31 -22.27 16 10 N -1.05 -17.76 5.39 -51.41 -0.28 -18.04 16 11 C 0.17 3.55 6.02 38.20 0.23 3.78 16 12 C -0.19 -3.40 9.23 22.42 0.21 -3.19 16 13 C -0.04 -0.81 10.03 22.24 0.22 -0.59 16 14 C -0.22 -5.50 9.04 22.39 0.20 -5.30 16 15 C 0.13 4.00 6.68 22.49 0.15 4.15 16 16 O -0.34 -13.70 10.13 -92.46 -0.94 -14.64 16 17 C 0.08 3.44 4.68 71.98 0.34 3.78 16 18 C 0.03 1.39 5.34 29.85 0.16 1.55 16 19 C -0.54 -29.89 9.11 25.60 0.23 -29.66 16 20 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 21 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 22 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 23 Si 0.98 42.74 29.54 68.60 2.03 44.76 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 27 C -0.18 -4.87 9.91 22.49 0.22 -4.65 16 28 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.06 0.45 5.88 -2.39 -0.01 0.44 16 30 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.44 6.36 8.92 -96.75 -0.86 5.50 16 34 H 0.17 2.59 5.63 -2.91 -0.02 2.57 16 35 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.14 3.34 6.29 -2.91 -0.02 3.33 16 37 H 0.07 2.50 7.67 -2.39 -0.02 2.48 16 38 H 0.07 2.52 7.65 -2.39 -0.02 2.50 16 39 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 40 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 42 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -76.11 372.54 2.06 -74.04 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.20 Total: 10.32 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 4.65 Total: -30.46 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: 0.38 Total: -85.19 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -4.94 Total: -53.30 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 40.07 SS G_CDS: -0.24 Total: 39.83 kcal Total: -76.11 2.06 -74.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416939637.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.270 kcal (2) G-P(sol) polarization free energy of solvation -76.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds