Wall clock time and date at job start Tue Mar 31 2020 21:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46804 * 2 1 4 4 H 1.08999 * 109.47035 * 55.00034 * 3 2 1 5 5 C 1.50697 * 109.47137 * 174.99835 * 3 2 1 6 6 H 1.08001 * 120.00134 * 120.00078 * 5 3 2 7 7 C 1.37879 * 120.00039 * 300.00171 * 5 3 2 8 8 N 1.31513 * 120.00169 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99774 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47434 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47043 * 120.00358 * 9 7 5 12 12 H 1.48503 * 109.47198 * 239.99599 * 9 7 5 13 13 N 1.46501 * 109.46972 * 295.00039 * 3 2 1 14 14 C 1.34780 * 120.00102 * 85.00423 * 13 3 2 15 15 O 1.21358 * 119.99853 * 359.97438 * 14 13 3 16 16 C 1.49354 * 120.00030 * 179.97438 * 14 13 3 17 17 O 1.21371 * 119.99912 * 359.97438 * 16 14 13 18 18 N 1.34770 * 120.00443 * 179.97438 * 16 14 13 19 19 C 1.39334 * 120.00453 * 184.52609 * 18 16 14 20 20 C 1.39135 * 119.93600 * 325.20620 * 19 18 16 21 21 C 1.37654 * 120.10727 * 180.27088 * 20 19 18 22 22 C 1.39807 * 119.96871 * 0.02986 * 21 20 19 23 23 C 1.47472 * 120.06712 * 179.97438 * 22 21 20 24 24 O 1.21508 * 120.00000 * 179.97438 * 23 22 21 25 25 O 1.34752 * 120.00104 * 359.97438 * 23 22 21 26 26 C 1.39801 * 119.86675 * 359.97438 * 22 21 20 27 27 C 1.37851 * 119.89848 * 359.97438 * 26 22 21 28 28 F 1.35099 * 119.98349 * 180.02562 * 27 26 22 29 29 H 1.08996 * 109.47346 * 299.99544 * 1 2 3 30 30 H 1.09000 * 109.46918 * 60.00422 * 1 2 3 31 31 H 1.09001 * 109.46842 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47071 * 240.00097 * 2 1 3 33 33 H 1.09000 * 109.46918 * 119.99578 * 2 1 3 34 34 H 0.96998 * 120.00205 * 180.02562 * 8 7 5 35 35 H 0.97005 * 119.99767 * 264.99687 * 13 3 2 36 36 H 0.97006 * 119.99406 * 4.52448 * 18 16 14 37 37 H 1.08003 * 119.94842 * 0.25447 * 20 19 18 38 38 H 1.08004 * 120.02116 * 180.02562 * 21 20 19 39 39 H 0.96697 * 117.00311 * 179.97438 * 25 23 22 40 40 H 1.08002 * 120.04641 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8890 -0.6522 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3375 2.1734 9 14 6.0049 0.8803 1.3812 10 1 6.5988 1.5444 0.1931 11 1 6.3999 1.6159 2.6092 12 1 6.4962 -0.5187 1.4628 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3670 15 8 -0.3402 2.6319 -0.4338 16 6 0.0401 3.3326 -2.6430 17 8 0.8155 3.3655 -3.5761 18 7 -1.1773 3.8990 -2.7584 19 6 -1.5819 4.4390 -3.9775 20 6 -0.6508 5.0572 -4.8062 21 6 -1.0476 5.5968 -6.0088 22 6 -2.3884 5.5243 -6.3983 23 6 -2.8160 6.1021 -7.6860 24 8 -3.9814 6.0379 -8.0235 25 8 -1.9142 6.7012 -8.4882 26 6 -3.3229 4.9028 -5.5647 27 6 -2.9193 4.3634 -4.3620 28 9 -3.8209 3.7621 -3.5553 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0602 2.9503 35 1 2.2719 2.1232 -1.9978 36 1 -1.7720 3.9308 -1.9926 37 1 0.3849 5.1142 -4.5053 38 1 -0.3236 6.0760 -6.6511 39 1 -2.2416 7.0647 -9.3223 40 1 -4.3593 4.8448 -5.8629 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422637725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:01 Heat of formation + Delta-G solvation = -175.621255 kcal Electronic energy + Delta-G solvation = -28400.901350 eV Core-core repulsion = 23902.508566 eV Total energy + Delta-G solvation = -4498.392783 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.116 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.25988 -41.16631 -40.57658 -39.12913 -38.05366 -36.50471 -35.71136 -34.97796 -32.51620 -31.22603 -31.06421 -30.59540 -27.41857 -25.93409 -24.07935 -23.34137 -22.89820 -21.76144 -20.45794 -19.62339 -19.05029 -18.80871 -18.00959 -17.65883 -16.76789 -16.50988 -16.19707 -16.09852 -15.92380 -15.79087 -15.58466 -15.24644 -14.48392 -14.44051 -14.31432 -14.01381 -13.51768 -13.38151 -12.91174 -12.85283 -12.81059 -12.20583 -12.16904 -11.96539 -11.68697 -11.47066 -11.35637 -11.09338 -11.03335 -10.94729 -10.84207 -10.42170 -10.33349 -9.77255 -9.40615 -9.23126 -9.19871 -8.69310 -8.63674 -8.14497 -6.23713 -4.33789 0.02690 0.72306 1.51747 2.06952 2.34531 2.52197 3.16118 3.18616 3.27173 3.30104 3.50817 3.71299 3.85062 4.25550 4.28068 4.54159 4.58182 4.68197 4.89902 5.06260 5.08907 5.41313 5.59194 5.63247 5.73989 5.86499 6.03449 6.25393 6.29675 6.35793 6.48352 6.72816 6.87598 6.99963 7.03853 7.19467 7.36402 7.45079 7.53953 7.62305 7.72693 8.00821 8.30858 8.50936 8.76604 9.33362 10.81698 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022495 B = 0.002332 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.420103 B =12005.822975 C =12983.341703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.267 3.733 4 H 0.056 0.944 5 C -0.538 4.538 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.664 5.664 14 C 0.495 3.505 15 O -0.524 6.524 16 C 0.511 3.489 17 O -0.497 6.497 18 N -0.650 5.650 19 C 0.162 3.838 20 C -0.114 4.114 21 C -0.045 4.045 22 C -0.126 4.126 23 C 0.534 3.466 24 O -0.514 6.514 25 O -0.510 6.510 26 C -0.068 4.068 27 C 0.063 3.937 28 F -0.126 7.126 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.027 0.973 32 H 0.035 0.965 33 H 0.104 0.896 34 H 0.266 0.734 35 H 0.402 0.598 36 H 0.430 0.570 37 H 0.162 0.838 38 H 0.151 0.849 39 H 0.416 0.584 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.965 10.506 -16.141 21.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.074 0.926 5 C -0.576 4.576 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.313 5.313 14 C 0.273 3.727 15 O -0.402 6.402 16 C 0.295 3.705 17 O -0.370 6.370 18 N -0.297 5.297 19 C 0.064 3.936 20 C -0.134 4.134 21 C -0.064 4.064 22 C -0.129 4.129 23 C 0.378 3.622 24 O -0.403 6.403 25 O -0.321 6.321 26 C -0.087 4.087 27 C 0.041 3.959 28 F -0.105 7.105 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.237 0.763 36 H 0.269 0.731 37 H 0.180 0.820 38 H 0.169 0.831 39 H 0.275 0.725 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.056 10.115 -15.538 21.092 hybrid contribution 0.472 0.048 -0.287 0.554 sum -9.584 10.163 -15.826 21.109 Atomic orbital electron populations 1.21861 0.98263 0.98549 1.00996 1.21977 0.92663 0.99319 1.02875 1.19066 0.94917 0.89433 0.79911 0.92624 1.21221 0.90184 1.39541 1.06633 0.91669 1.24877 0.98900 0.94548 0.95227 1.69886 1.35250 1.37356 1.09312 0.86346 0.84421 0.77883 0.78216 1.19611 1.20805 1.20782 1.46491 1.13156 1.52294 1.19349 1.19432 0.84718 0.81812 0.86723 1.90772 1.51018 1.59309 1.39133 1.21202 0.81132 0.78204 0.89967 1.90726 1.50011 1.56220 1.40051 1.43162 1.18589 1.56158 1.11743 1.18107 0.91850 0.95332 0.88289 1.21330 1.01213 0.96625 0.94226 1.21441 0.94439 0.95151 0.95365 1.18723 0.94527 1.05983 0.93632 1.20599 0.82924 0.74683 0.83988 1.90917 1.19321 1.55925 1.74149 1.84555 1.43428 1.69404 1.34761 1.20975 1.01244 0.95325 0.91198 1.17163 0.85835 1.01936 0.90966 1.91553 1.66025 1.81160 1.71763 0.92888 0.94702 0.95371 0.94596 0.87752 0.92423 0.76308 0.73092 0.82042 0.83140 0.72457 0.82705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.51 37.16 0.32 -2.58 16 2 C -0.13 -2.97 5.45 -26.73 -0.15 -3.11 16 3 C 0.27 6.31 2.24 -69.08 -0.15 6.15 16 4 H 0.06 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.51 8.73 -34.44 -0.30 -13.81 16 6 H 0.07 1.59 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.51 11.29 55.43 0.63 -22.88 16 9 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 10 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.66 -13.14 5.01 -55.39 -0.28 -13.41 16 14 C 0.50 9.05 6.46 -11.63 -0.08 8.98 16 15 O -0.52 -10.55 13.62 5.49 0.07 -10.48 16 16 C 0.51 7.79 7.72 -11.63 -0.09 7.70 16 17 O -0.50 -7.87 13.86 5.48 0.08 -7.80 16 18 N -0.65 -8.27 5.19 -10.24 -0.05 -8.32 16 19 C 0.16 1.86 6.31 -83.70 -0.53 1.33 16 20 C -0.11 -1.18 8.67 -39.46 -0.34 -1.53 16 21 C -0.04 -0.38 9.60 -39.21 -0.38 -0.76 16 22 C -0.13 -1.16 5.87 -104.96 -0.62 -1.77 16 23 C 0.53 4.74 8.26 34.49 0.29 5.02 16 24 O -0.51 -5.93 17.12 -19.27 -0.33 -6.26 16 25 O -0.51 -2.98 12.67 -40.63 -0.51 -3.50 16 26 C -0.07 -0.65 9.56 -39.14 -0.37 -1.03 16 27 C 0.06 0.67 7.30 -39.30 -0.29 0.39 16 28 F -0.13 -1.45 16.93 2.25 0.04 -1.41 16 29 H 0.05 1.15 7.85 -51.93 -0.41 0.75 16 30 H 0.03 0.70 5.64 -51.93 -0.29 0.40 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 34 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 35 H 0.40 7.38 8.01 -40.82 -0.33 7.06 16 36 H 0.43 5.10 8.12 -40.82 -0.33 4.77 16 37 H 0.16 1.78 6.17 -52.48 -0.32 1.46 16 38 H 0.15 0.97 7.60 -52.48 -0.40 0.58 16 39 H 0.42 0.60 9.11 45.56 0.42 1.02 16 40 H 0.16 1.36 7.64 -52.49 -0.40 0.96 16 LS Contribution 352.55 15.07 5.31 5.31 Total: -1.00 -29.85 352.55 -6.01 -35.86 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -3.16 Total: 11.38 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -2.78 Total: 6.64 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.30 Total: -44.62 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.69 Total: -28.03 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.85 -6.01 -35.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422637725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.758 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds