Wall clock time and date at job start Tue Mar 31 2020 21:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47520 * 2 1 4 4 H 1.09005 * 109.46813 * 54.43664 * 3 2 1 5 5 C 1.50696 * 109.47148 * 174.43768 * 3 2 1 6 6 H 1.07999 * 119.99674 * 114.27232 * 5 3 2 7 7 C 1.37876 * 120.00245 * 294.27126 * 5 3 2 8 8 N 1.31516 * 120.00054 * 159.45973 * 7 5 3 9 9 Si 1.86801 * 119.99959 * 339.45884 * 7 5 3 10 10 H 1.48503 * 109.47397 * 269.99945 * 9 7 5 11 11 H 1.48498 * 109.47081 * 29.99990 * 9 7 5 12 12 H 1.48500 * 109.47090 * 149.99757 * 9 7 5 13 13 N 1.46499 * 109.47226 * 294.44465 * 3 2 1 14 14 C 1.34774 * 120.00312 * 84.99339 * 13 3 2 15 15 O 1.21361 * 120.00141 * 0.02562 * 14 13 3 16 16 C 1.49355 * 119.99740 * 179.97438 * 14 13 3 17 17 O 1.21374 * 120.00315 * 0.02562 * 16 14 13 18 18 N 1.34774 * 119.99740 * 180.02562 * 16 14 13 19 19 C 1.39724 * 119.99991 * 185.05559 * 18 16 14 20 20 C 1.38949 * 120.07600 * 31.50246 * 19 18 16 21 21 C 1.38078 * 119.92696 * 179.97438 * 20 19 18 22 22 C 1.38312 * 120.07082 * 359.97438 * 21 20 19 23 23 C 1.38267 * 120.15751 * 0.02562 * 22 21 20 24 24 S 1.76198 * 119.96301 * 180.02562 * 23 22 21 25 25 C 1.81400 * 103.00122 * 90.00136 * 24 23 22 26 26 O 1.42100 * 103.00093 * 336.14826 * 24 23 22 27 27 C 1.38122 * 120.07364 * 359.74301 * 23 22 21 28 28 H 1.09006 * 109.46990 * 59.99458 * 1 2 3 29 29 H 1.09004 * 109.47316 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47040 * 300.00019 * 1 2 3 31 31 H 1.09006 * 109.46991 * 239.99745 * 2 1 3 32 32 H 1.08997 * 109.47222 * 120.00485 * 2 1 3 33 33 H 0.96995 * 119.99418 * 354.93471 * 8 7 5 34 34 H 0.97003 * 119.99927 * 264.99676 * 13 3 2 35 35 H 0.97001 * 120.00052 * 5.05823 * 18 16 14 36 36 H 1.08008 * 120.03885 * 359.94904 * 20 19 18 37 37 H 1.08003 * 119.96352 * 179.97438 * 21 20 19 38 38 H 1.08007 * 119.91942 * 180.02562 * 22 21 20 39 39 H 1.08997 * 109.47100 * 59.99601 * 25 24 23 40 40 H 1.08998 * 109.47060 * 180.02562 * 25 24 23 41 41 H 1.09000 * 109.46641 * 299.99823 * 25 24 23 42 42 H 1.08005 * 120.03736 * 180.26920 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5976 1.9842 0.8360 5 6 3.5407 1.4446 0.1377 6 1 4.1569 1.8021 -0.6740 7 6 4.1270 0.9902 1.2999 8 7 5.3857 0.6087 1.2959 9 14 3.1337 0.9163 2.8802 10 1 3.2673 2.2030 3.6095 11 1 1.7044 0.6774 2.5557 12 1 3.6396 -0.1901 3.7316 13 7 1.6640 2.0934 -1.2574 14 6 0.4479 2.6599 -1.3856 15 8 -0.3357 2.6312 -0.4592 16 6 0.0648 3.3240 -2.6674 17 8 0.8486 3.3532 -3.5937 18 7 -1.1511 3.8910 -2.7954 19 6 -1.5498 4.4187 -4.0262 20 6 -1.0922 3.8503 -5.2086 21 6 -1.4885 4.3740 -6.4232 22 6 -2.3406 5.4627 -6.4636 23 6 -2.7980 6.0308 -5.2890 24 16 -3.8838 7.4173 -5.3464 25 6 -5.5265 6.6482 -5.3741 26 8 -3.6065 7.9880 -6.6179 27 6 -2.4092 5.5091 -4.0706 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 5.8801 0.5772 0.4621 34 1 2.2904 2.1167 -1.9977 35 1 -1.7495 3.9327 -2.0331 36 1 -0.4268 3.0001 -5.1778 37 1 -1.1328 3.9329 -7.3427 38 1 -2.6494 5.8701 -7.4151 39 1 -5.6615 6.0473 -4.4749 40 1 -6.2906 7.4247 -5.4109 41 1 -5.6143 6.0106 -6.2538 42 1 -2.7703 5.9506 -3.1534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439548090.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:25 Heat of formation + Delta-G solvation = -76.969018 kcal Electronic energy + Delta-G solvation = -26312.589795 eV Core-core repulsion = 22384.688069 eV Total energy + Delta-G solvation = -3927.901725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.03977 -39.41294 -38.15662 -36.11124 -35.75845 -34.90549 -32.55107 -31.58541 -31.43160 -30.06849 -29.16688 -27.58207 -25.07373 -23.51170 -22.64565 -22.21848 -20.62307 -19.75149 -18.94358 -18.50316 -17.47767 -17.13364 -16.75257 -16.07511 -15.99972 -15.57548 -15.25505 -15.19421 -14.93553 -14.31550 -14.10211 -13.92040 -13.79409 -13.42167 -13.19722 -13.11054 -12.77293 -12.54786 -12.44461 -12.37104 -12.16983 -11.92722 -11.83870 -11.37709 -10.93583 -10.87819 -10.83731 -10.59924 -10.56727 -10.01368 -9.81466 -9.53358 -9.28374 -9.21818 -8.77807 -8.47543 -8.42488 -8.35738 -6.68063 -4.31471 0.57213 0.86698 1.47842 1.70402 2.28866 2.47197 3.26328 3.34015 3.38200 3.47331 3.52169 3.60724 3.86628 4.36017 4.50951 4.76235 4.79112 4.81537 4.86333 4.93794 5.04114 5.13082 5.21778 5.42447 5.55718 5.82597 5.88565 5.91273 5.95390 6.06421 6.10482 6.14405 6.51138 6.60189 6.64389 6.73180 6.83651 6.89018 7.10927 7.20484 7.45396 7.66624 8.12539 8.19852 8.41287 8.70883 9.36269 10.71212 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.025966 B = 0.002235 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.077978 B =12523.413776 C =12785.748542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.246 3.754 4 H 0.049 0.951 5 C -0.627 4.627 6 H 0.065 0.935 7 C 0.046 3.954 8 N -0.889 5.889 9 Si 1.035 2.965 10 H -0.282 1.282 11 H -0.268 1.268 12 H -0.283 1.283 13 N -0.660 5.660 14 C 0.495 3.505 15 O -0.530 6.530 16 C 0.507 3.493 17 O -0.502 6.502 18 N -0.650 5.650 19 C 0.136 3.864 20 C -0.087 4.087 21 C -0.113 4.113 22 C -0.071 4.071 23 C -0.443 4.443 24 S 1.336 4.664 25 C -0.499 4.499 26 O -0.857 6.857 27 C -0.071 4.071 28 H 0.044 0.956 29 H 0.034 0.966 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.272 0.728 34 H 0.406 0.594 35 H 0.425 0.575 36 H 0.142 0.858 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.752 9.930 -9.314 24.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C 0.144 3.856 4 H 0.067 0.933 5 C -0.664 4.664 6 H 0.083 0.917 7 C -0.162 4.162 8 N -0.521 5.521 9 Si 0.861 3.139 10 H -0.208 1.208 11 H -0.193 1.193 12 H -0.209 1.209 13 N -0.309 5.309 14 C 0.274 3.726 15 O -0.409 6.409 16 C 0.290 3.710 17 O -0.375 6.375 18 N -0.297 5.297 19 C 0.040 3.960 20 C -0.108 4.108 21 C -0.133 4.133 22 C -0.091 4.091 23 C -0.539 4.539 24 S 1.532 4.468 25 C -0.655 4.655 26 O -0.852 6.852 27 C -0.092 4.092 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.241 0.759 35 H 0.263 0.737 36 H 0.160 0.840 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.100 0.900 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.310 10.458 -7.662 24.096 hybrid contribution -0.139 -1.237 -3.463 3.680 sum -20.449 9.221 -11.126 25.040 Atomic orbital electron populations 1.21908 0.97329 0.99251 1.01777 1.22239 0.93773 0.99322 1.01660 1.19345 0.96385 0.88748 0.81141 0.93280 1.22024 0.89269 1.49953 1.05182 0.91694 1.25667 0.96882 0.91900 1.01777 1.70820 1.10377 1.39642 1.31215 0.84179 0.76274 0.77583 0.75864 1.20842 1.19294 1.20850 1.46248 1.13279 1.52459 1.18873 1.19613 0.84449 0.81459 0.87094 1.90740 1.50564 1.59582 1.39967 1.20953 0.81475 0.78839 0.89710 1.90756 1.49830 1.55868 1.41055 1.43222 1.17347 1.57295 1.11885 1.17835 0.98250 0.94522 0.85354 1.21466 0.98600 0.99684 0.91001 1.21161 0.97675 0.96690 0.97759 1.21092 0.95688 0.94561 0.97742 1.27458 1.14136 1.15904 0.96445 1.69586 0.83817 0.84946 1.08401 1.27771 1.19263 1.10767 1.07735 1.93107 1.80631 1.66878 1.44618 1.20539 0.98151 0.93293 0.97254 0.93690 0.94727 0.92661 0.92827 0.91614 0.91757 0.75904 0.73708 0.84047 0.85273 0.85496 0.86937 0.87612 0.89974 0.83982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.53 37.16 0.32 -2.36 16 2 C -0.13 -2.74 5.03 -26.73 -0.13 -2.87 16 3 C 0.25 5.53 1.78 -69.09 -0.12 5.41 16 4 H 0.05 1.17 6.00 -51.93 -0.31 0.86 16 5 C -0.63 -16.28 8.97 -34.44 -0.31 -16.59 16 6 H 0.06 1.80 7.96 -52.49 -0.42 1.38 16 7 C 0.05 1.23 5.25 -17.82 -0.09 1.14 16 8 N -0.89 -25.65 13.70 55.43 0.76 -24.89 16 9 Si 1.03 23.66 26.32 -169.99 -4.47 19.19 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 11 H -0.27 -5.70 5.87 56.52 0.33 -5.37 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.66 -12.91 5.02 -55.40 -0.28 -13.18 16 14 C 0.50 8.68 6.48 -11.63 -0.08 8.61 16 15 O -0.53 -9.80 13.62 5.49 0.07 -9.72 16 16 C 0.51 7.66 7.64 -11.63 -0.09 7.57 16 17 O -0.50 -8.47 14.03 5.48 0.08 -8.40 16 18 N -0.65 -7.56 5.33 -10.30 -0.05 -7.62 16 19 C 0.14 1.51 6.31 -83.75 -0.53 0.98 16 20 C -0.09 -1.06 8.66 -39.38 -0.34 -1.40 16 21 C -0.11 -1.24 10.04 -39.61 -0.40 -1.64 16 22 C -0.07 -0.77 9.44 -39.54 -0.37 -1.14 16 23 C -0.44 -3.90 5.61 -39.61 -0.22 -4.12 16 24 S 1.34 8.13 14.18 -107.50 -1.52 6.61 16 25 C -0.50 -2.43 10.70 101.05 1.08 -1.35 16 26 O -0.86 -10.89 16.89 -35.23 -0.60 -11.49 16 27 C -0.07 -0.58 9.66 -39.38 -0.38 -0.96 16 28 H 0.04 0.81 5.63 -51.93 -0.29 0.52 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 1.05 7.88 -51.93 -0.41 0.64 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.42 5.62 -51.93 -0.29 1.13 16 33 H 0.27 7.81 8.73 -40.82 -0.36 7.45 16 34 H 0.41 7.70 7.99 -40.82 -0.33 7.37 16 35 H 0.42 3.99 8.29 -40.82 -0.34 3.65 16 36 H 0.14 1.88 6.27 -52.48 -0.33 1.55 16 37 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 38 H 0.13 1.41 7.45 -52.48 -0.39 1.02 16 39 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.11 0.40 8.14 -51.92 -0.42 -0.02 16 41 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 42 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 LS Contribution 361.93 15.07 5.45 5.45 Total: -1.00 -35.32 361.93 -7.52 -42.84 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.29 Total: 9.93 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -1.67 Total: -8.73 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.43 Total: -45.69 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.44 Total: -29.61 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -4.47 Total: 19.19 kcal Atomic # 16 Polarization: 8.13 SS G_CDS: -1.52 Total: 6.61 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.32 -7.52 -42.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439548090.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.130 kcal (2) G-P(sol) polarization free energy of solvation -35.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds