Wall clock time and date at job start Tue Mar 31 2020 21:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47520 * 2 1 4 4 H 1.09005 * 109.46813 * 54.43664 * 3 2 1 5 5 C 1.50696 * 109.47148 * 174.43768 * 3 2 1 6 6 H 1.07999 * 119.99674 * 114.27232 * 5 3 2 7 7 C 1.37876 * 120.00245 * 294.27126 * 5 3 2 8 8 N 1.31516 * 120.00054 * 159.45973 * 7 5 3 9 9 Si 1.86801 * 119.99959 * 339.45884 * 7 5 3 10 10 H 1.48503 * 109.47397 * 269.99945 * 9 7 5 11 11 H 1.48498 * 109.47081 * 29.99990 * 9 7 5 12 12 H 1.48500 * 109.47090 * 149.99757 * 9 7 5 13 13 N 1.46499 * 109.47226 * 294.44465 * 3 2 1 14 14 C 1.34774 * 120.00312 * 84.99339 * 13 3 2 15 15 O 1.21361 * 120.00141 * 0.02562 * 14 13 3 16 16 C 1.49355 * 119.99740 * 179.97438 * 14 13 3 17 17 O 1.21374 * 120.00315 * 0.02562 * 16 14 13 18 18 N 1.34774 * 119.99740 * 180.02562 * 16 14 13 19 19 C 1.39724 * 119.99991 * 185.05559 * 18 16 14 20 20 C 1.38949 * 120.07600 * 31.50246 * 19 18 16 21 21 C 1.38078 * 119.92696 * 179.97438 * 20 19 18 22 22 C 1.38312 * 120.07082 * 359.97438 * 21 20 19 23 23 C 1.38267 * 120.15751 * 0.02562 * 22 21 20 24 24 S 1.76198 * 119.96301 * 180.02562 * 23 22 21 25 25 C 1.81400 * 103.00122 * 90.00136 * 24 23 22 26 26 O 1.42100 * 103.00093 * 336.14826 * 24 23 22 27 27 C 1.38122 * 120.07364 * 359.74301 * 23 22 21 28 28 H 1.09006 * 109.46990 * 59.99458 * 1 2 3 29 29 H 1.09004 * 109.47316 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47040 * 300.00019 * 1 2 3 31 31 H 1.09006 * 109.46991 * 239.99745 * 2 1 3 32 32 H 1.08997 * 109.47222 * 120.00485 * 2 1 3 33 33 H 0.96995 * 119.99418 * 354.93471 * 8 7 5 34 34 H 0.97003 * 119.99927 * 264.99676 * 13 3 2 35 35 H 0.97001 * 120.00052 * 5.05823 * 18 16 14 36 36 H 1.08008 * 120.03885 * 359.94904 * 20 19 18 37 37 H 1.08003 * 119.96352 * 179.97438 * 21 20 19 38 38 H 1.08007 * 119.91942 * 180.02562 * 22 21 20 39 39 H 1.08997 * 109.47100 * 59.99601 * 25 24 23 40 40 H 1.08998 * 109.47060 * 180.02562 * 25 24 23 41 41 H 1.09000 * 109.46641 * 299.99823 * 25 24 23 42 42 H 1.08005 * 120.03736 * 180.26920 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5976 1.9842 0.8360 5 6 3.5407 1.4446 0.1377 6 1 4.1569 1.8021 -0.6740 7 6 4.1270 0.9902 1.2999 8 7 5.3857 0.6087 1.2959 9 14 3.1337 0.9163 2.8802 10 1 3.2673 2.2030 3.6095 11 1 1.7044 0.6774 2.5557 12 1 3.6396 -0.1901 3.7316 13 7 1.6640 2.0934 -1.2574 14 6 0.4479 2.6599 -1.3856 15 8 -0.3357 2.6312 -0.4592 16 6 0.0648 3.3240 -2.6674 17 8 0.8486 3.3532 -3.5937 18 7 -1.1511 3.8910 -2.7954 19 6 -1.5498 4.4187 -4.0262 20 6 -1.0922 3.8503 -5.2086 21 6 -1.4885 4.3740 -6.4232 22 6 -2.3406 5.4627 -6.4636 23 6 -2.7980 6.0308 -5.2890 24 16 -3.8838 7.4173 -5.3464 25 6 -5.5265 6.6482 -5.3741 26 8 -3.6065 7.9880 -6.6179 27 6 -2.4092 5.5091 -4.0706 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 5.8801 0.5772 0.4621 34 1 2.2904 2.1167 -1.9977 35 1 -1.7495 3.9327 -2.0331 36 1 -0.4268 3.0001 -5.1778 37 1 -1.1328 3.9329 -7.3427 38 1 -2.6494 5.8701 -7.4151 39 1 -5.6615 6.0473 -4.4749 40 1 -6.2906 7.4247 -5.4109 41 1 -5.6143 6.0106 -6.2538 42 1 -2.7703 5.9506 -3.1534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439548090.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:24 Heat of formation + Delta-G solvation = -104.904957 kcal Electronic energy + Delta-G solvation = -26313.801188 eV Core-core repulsion = 22384.688069 eV Total energy + Delta-G solvation = -3929.113118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.19716 -40.59882 -39.31109 -37.33297 -36.91019 -36.04813 -34.48140 -33.17007 -32.22526 -30.97786 -29.58526 -29.33056 -26.37460 -24.45389 -24.17250 -23.34823 -21.96317 -21.31270 -20.35826 -19.51185 -19.00173 -17.97774 -17.90861 -17.24533 -17.15543 -16.89640 -16.16598 -16.01364 -15.82221 -15.62515 -15.33595 -15.07501 -14.72765 -14.51631 -14.49429 -14.44369 -14.09821 -13.91131 -13.65713 -13.55472 -13.24380 -12.90368 -12.66609 -12.64131 -12.62287 -12.45172 -12.28338 -11.79907 -11.71348 -11.50983 -11.38581 -11.18032 -10.70751 -10.48573 -10.24483 -10.00052 -9.41912 -9.31982 -8.82098 -6.45294 -0.25870 -0.00151 0.51564 0.92584 1.25788 1.52180 1.53555 1.73904 1.77271 2.08467 2.46741 2.57875 2.64784 2.98034 2.98447 3.39434 3.81364 4.02389 4.05909 4.30112 4.31313 4.34870 4.38511 4.39253 4.50310 4.56998 4.67154 4.81086 5.00827 5.04212 5.09319 5.15060 5.19518 5.21891 5.24178 5.29829 5.40700 5.52526 5.61595 5.76518 5.93950 5.99924 6.44915 6.51144 6.69694 6.98224 7.30323 8.56135 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.025966 B = 0.002235 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.077978 B =12523.413776 C =12785.748542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.131 4.131 3 C 0.252 3.748 4 H 0.043 0.957 5 C -0.625 4.625 6 H 0.034 0.966 7 C -0.001 4.001 8 N -0.922 5.922 9 Si 1.072 2.928 10 H -0.273 1.273 11 H -0.241 1.241 12 H -0.282 1.282 13 N -0.671 5.671 14 C 0.500 3.500 15 O -0.534 6.534 16 C 0.514 3.486 17 O -0.525 6.525 18 N -0.628 5.628 19 C 0.115 3.885 20 C -0.107 4.107 21 C -0.122 4.122 22 C -0.087 4.087 23 C -0.447 4.447 24 S 1.403 4.597 25 C -0.497 4.497 26 O -0.923 6.923 27 C -0.050 4.050 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.259 0.741 34 H 0.406 0.594 35 H 0.437 0.563 36 H 0.124 0.876 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.143 0.857 40 H 0.122 0.878 41 H 0.063 0.937 42 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.395 10.910 -8.048 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.170 4.170 3 C 0.148 3.852 4 H 0.061 0.939 5 C -0.663 4.663 6 H 0.053 0.947 7 C -0.202 4.202 8 N -0.556 5.556 9 Si 0.893 3.107 10 H -0.199 1.199 11 H -0.165 1.165 12 H -0.208 1.208 13 N -0.320 5.320 14 C 0.280 3.720 15 O -0.413 6.413 16 C 0.296 3.704 17 O -0.400 6.400 18 N -0.276 5.276 19 C 0.021 3.979 20 C -0.127 4.127 21 C -0.142 4.142 22 C -0.106 4.106 23 C -0.542 4.542 24 S 1.601 4.399 25 C -0.655 4.655 26 O -0.919 6.919 27 C -0.071 4.071 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.241 0.759 35 H 0.279 0.721 36 H 0.142 0.858 37 H 0.155 0.845 38 H 0.136 0.864 39 H 0.161 0.839 40 H 0.141 0.859 41 H 0.082 0.918 42 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -23.989 11.460 -6.422 27.350 hybrid contribution 0.874 -1.466 -3.967 4.318 sum -23.114 9.994 -10.389 27.241 Atomic orbital electron populations 1.21800 0.94944 1.00879 1.01653 1.22160 0.95845 0.97780 1.01211 1.19065 0.93793 0.90046 0.82291 0.93904 1.22195 0.91396 1.48609 1.04068 0.94732 1.26947 0.96985 0.91259 1.05032 1.70935 1.11678 1.42493 1.30492 0.83719 0.76463 0.77968 0.72581 1.19863 1.16473 1.20792 1.46080 1.14468 1.53471 1.18014 1.19887 0.83453 0.80688 0.87942 1.90727 1.50491 1.59517 1.40531 1.20369 0.82500 0.79270 0.88245 1.90768 1.50873 1.57089 1.41311 1.42988 1.16056 1.55869 1.12641 1.18036 0.99552 0.95905 0.84423 1.21437 0.99238 0.99894 0.92126 1.21252 0.98011 0.97024 0.97894 1.21202 0.96166 0.94826 0.98446 1.27874 1.14239 1.16103 0.95998 1.68811 0.83155 0.82513 1.05462 1.27754 1.17985 1.11302 1.08427 1.92990 1.82283 1.69067 1.47575 1.21028 0.95727 0.91399 0.98932 0.93549 0.92290 0.92928 0.93155 0.92316 0.93226 0.75888 0.72145 0.85823 0.84500 0.86388 0.83910 0.85935 0.91763 0.78832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 8.53 71.98 0.61 -4.01 16 2 C -0.13 -5.31 5.03 30.59 0.15 -5.16 16 3 C 0.25 11.17 1.78 44.24 0.08 11.25 16 4 H 0.04 1.98 6.00 -2.38 -0.01 1.96 16 5 C -0.63 -33.12 8.97 25.60 0.23 -32.89 16 6 H 0.03 1.99 7.96 -2.91 -0.02 1.97 16 7 C 0.00 -0.05 5.25 84.65 0.44 0.40 16 8 N -0.92 -54.70 13.70 21.45 0.29 -54.40 16 9 Si 1.07 47.11 26.32 68.60 1.81 48.91 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.24 -9.48 5.87 99.48 0.58 -8.89 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 13 N -0.67 -26.10 5.02 -447.53 -2.25 -28.35 16 14 C 0.50 16.88 6.48 87.24 0.57 17.44 16 15 O -0.53 -18.47 13.62 -3.28 -0.04 -18.51 16 16 C 0.51 14.90 7.64 87.24 0.67 15.56 16 17 O -0.53 -17.71 14.03 -3.32 -0.05 -17.76 16 18 N -0.63 -13.05 5.33 -304.84 -1.62 -14.67 16 19 C 0.12 2.32 6.31 38.21 0.24 2.56 16 20 C -0.11 -2.56 8.66 22.40 0.19 -2.37 16 21 C -0.12 -2.68 10.04 22.25 0.22 -2.46 16 22 C -0.09 -1.82 9.44 22.29 0.21 -1.61 16 23 C -0.45 -6.77 5.61 22.25 0.12 -6.64 16 24 S 1.40 13.22 14.18 -56.49 -0.80 12.42 16 25 C -0.50 -3.01 10.70 113.37 1.21 -1.80 16 26 O -0.92 -22.55 16.89 -148.98 -2.52 -25.06 16 27 C -0.05 -0.63 9.66 22.40 0.22 -0.42 16 28 H 0.05 1.55 5.63 -2.38 -0.01 1.54 16 29 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.05 1.82 7.88 -2.39 -0.02 1.80 16 31 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.06 2.44 5.62 -2.39 -0.01 2.43 16 33 H 0.26 15.52 8.73 -92.71 -0.81 14.71 16 34 H 0.41 15.74 7.99 -92.71 -0.74 15.00 16 35 H 0.44 6.66 8.29 -92.71 -0.77 5.89 16 36 H 0.12 3.38 6.27 -2.91 -0.02 3.36 16 37 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 38 H 0.12 2.66 7.45 -2.91 -0.02 2.64 16 39 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.19 0.33 8.06 -2.91 -0.02 0.31 16 Total: -1.00 -79.26 361.93 -0.59 -79.85 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: -0.59 Total: 27.70 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 5.18 Total: -10.14 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -3.58 Total: -97.42 kcal Atomic # 8 Polarization: -58.73 SS G_CDS: -2.61 Total: -61.34 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 1.81 Total: 48.91 kcal Atomic # 16 Polarization: 13.22 SS G_CDS: -0.80 Total: 12.42 kcal Total: -79.26 -0.59 -79.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439548090.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.052 kcal (2) G-P(sol) polarization free energy of solvation -79.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds