Wall clock time and date at job start Tue Mar 31 2020 21:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47310 * 2 1 4 4 H 1.08994 * 109.47150 * 304.99660 * 3 2 1 5 5 C 1.50706 * 109.46953 * 184.99713 * 3 2 1 6 6 H 1.07995 * 119.99787 * 240.00120 * 5 3 2 7 7 C 1.37879 * 119.99747 * 60.00249 * 5 3 2 8 8 N 1.31517 * 120.00218 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99829 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47121 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47028 * 120.00003 * 9 7 5 12 12 H 1.48501 * 109.47143 * 240.00299 * 9 7 5 13 13 N 1.46498 * 109.47002 * 65.00216 * 3 2 1 14 14 C 1.34778 * 119.99661 * 274.99806 * 13 3 2 15 15 O 1.21360 * 120.00428 * 359.97438 * 14 13 3 16 16 C 1.49352 * 119.99968 * 179.97438 * 14 13 3 17 17 O 1.21380 * 120.00062 * 0.02562 * 16 14 13 18 18 N 1.34778 * 119.99968 * 180.02562 * 16 14 13 19 19 C 1.39732 * 119.99703 * 185.28093 * 18 16 14 20 20 C 1.38925 * 120.07669 * 33.33633 * 19 18 16 21 21 C 1.38098 * 119.91971 * 180.02562 * 20 19 18 22 22 C 1.38291 * 120.07850 * 0.02562 * 21 20 19 23 23 S 1.76208 * 119.92442 * 179.70019 * 22 21 20 24 24 C 1.81396 * 102.99769 * 89.99779 * 23 22 21 25 25 O 1.42100 * 102.99700 * 336.14733 * 23 22 21 26 26 C 1.38300 * 120.15480 * 359.97438 * 22 21 20 27 27 C 1.38094 * 120.06850 * 0.02562 * 26 22 21 28 28 H 1.08997 * 109.47159 * 300.00365 * 1 2 3 29 29 H 1.09001 * 109.46776 * 60.00233 * 1 2 3 30 30 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47159 * 239.99635 * 2 1 3 32 32 H 1.09002 * 109.47114 * 120.00192 * 2 1 3 33 33 H 0.96995 * 119.99977 * 180.02562 * 8 7 5 34 34 H 0.96998 * 120.00540 * 95.00086 * 13 3 2 35 35 H 0.96996 * 120.00277 * 5.27439 * 18 16 14 36 36 H 1.07993 * 120.04223 * 0.02562 * 20 19 18 37 37 H 1.08005 * 119.96224 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.47139 * 60.00722 * 24 23 22 39 39 H 1.08998 * 109.46883 * 179.97438 * 24 23 22 40 40 H 1.08993 * 109.47376 * 300.00272 * 24 23 22 41 41 H 1.07995 * 119.96290 * 180.02562 * 26 22 21 42 42 H 1.08004 * 120.03449 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8887 0.6524 7 6 4.1434 0.8782 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8810 -1.3817 10 1 6.5988 1.5470 -0.1946 11 1 6.4970 -0.5178 -1.4629 12 1 6.3991 1.6165 -2.6101 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3397 2.6327 0.4335 16 6 0.0399 3.3316 2.6433 17 8 0.8151 3.3636 3.5768 18 7 -1.1776 3.8981 2.7586 19 6 -1.5072 4.6173 3.9104 20 6 -0.5299 5.3392 4.5839 21 6 -0.8592 6.0484 5.7222 22 6 -2.1598 6.0401 6.1920 23 16 -2.5738 6.9401 7.6493 24 6 -3.0336 8.5719 7.0042 25 8 -1.3307 7.0334 8.3313 26 6 -3.1353 5.3225 5.5240 27 6 -2.8129 4.6111 4.3851 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8293 -0.0611 -2.9499 34 1 2.2720 2.1231 1.9978 35 1 -1.8249 3.8066 2.0420 36 1 0.4860 5.3458 4.2179 37 1 -0.0999 6.6096 6.2466 38 1 -3.8774 8.4684 6.3220 39 1 -3.3138 9.2239 7.8316 40 1 -2.1865 9.0039 6.4715 41 1 -4.1501 5.3185 5.8934 42 1 -3.5750 4.0505 3.8641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439560665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:46 Heat of formation + Delta-G solvation = -105.597627 kcal Electronic energy + Delta-G solvation = -26163.040504 eV Core-core repulsion = 22233.897349 eV Total energy + Delta-G solvation = -3929.143155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.21954 -40.56090 -39.29678 -37.27818 -36.87464 -36.09418 -34.36742 -32.86526 -32.04981 -31.08219 -29.56013 -29.20546 -26.52461 -24.95414 -24.10423 -23.33413 -21.85715 -21.26330 -20.18552 -19.13411 -18.73555 -18.22845 -17.58372 -17.34322 -17.09807 -16.94153 -16.26528 -16.06272 -15.74357 -15.54116 -15.35823 -14.99595 -14.68372 -14.65065 -14.33956 -14.05781 -14.02504 -13.81128 -13.52626 -13.38612 -13.24561 -13.03354 -12.89247 -12.75362 -12.65984 -12.41538 -12.18833 -12.14797 -11.70485 -11.62851 -11.33706 -11.13828 -10.71491 -10.58775 -10.02130 -9.90478 -9.70750 -9.22415 -8.22887 -6.39709 -0.37146 0.31563 0.40016 1.00799 1.21851 1.40522 1.43286 1.54332 1.81663 2.07317 2.35457 2.61563 2.66409 3.02501 3.06946 3.40687 3.77101 3.93225 4.32328 4.34163 4.37778 4.43243 4.46087 4.52746 4.59121 4.68367 4.81571 4.98309 4.99153 5.13564 5.18999 5.22357 5.23146 5.25249 5.30892 5.35601 5.52618 5.63025 5.74844 5.86568 5.92239 6.07740 6.47109 6.61748 6.70933 7.02588 7.31942 8.82464 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.023962 B = 0.002149 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.237392 B =13027.822886 C =13825.628359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.017 0.983 5 C -0.555 4.555 6 H 0.065 0.935 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.968 3.032 10 H -0.268 1.268 11 H -0.276 1.276 12 H -0.281 1.281 13 N -0.671 5.671 14 C 0.497 3.503 15 O -0.541 6.541 16 C 0.514 3.486 17 O -0.522 6.522 18 N -0.636 5.636 19 C 0.161 3.839 20 C -0.164 4.164 21 C -0.059 4.059 22 C -0.483 4.483 23 S 1.409 4.591 24 C -0.498 4.498 25 O -0.933 6.933 26 C -0.005 4.005 27 C -0.151 4.151 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.268 0.732 34 H 0.407 0.593 35 H 0.435 0.565 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.146 0.854 39 H 0.121 0.879 40 H 0.056 0.944 41 H 0.208 0.792 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.834 11.088 16.898 29.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.035 0.965 5 C -0.593 4.593 6 H 0.083 0.917 7 C -0.178 4.178 8 N -0.545 5.545 9 Si 0.793 3.207 10 H -0.192 1.192 11 H -0.201 1.201 12 H -0.206 1.206 13 N -0.321 5.321 14 C 0.277 3.723 15 O -0.420 6.420 16 C 0.297 3.703 17 O -0.396 6.396 18 N -0.283 5.283 19 C 0.067 3.933 20 C -0.185 4.185 21 C -0.079 4.079 22 C -0.580 4.580 23 S 1.607 4.393 24 C -0.656 4.656 25 O -0.929 6.929 26 C -0.024 4.024 27 C -0.172 4.172 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.242 0.758 35 H 0.276 0.724 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.165 0.835 39 H 0.139 0.861 40 H 0.076 0.924 41 H 0.225 0.775 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -21.708 10.645 17.571 29.887 hybrid contribution 3.508 0.828 -1.922 4.085 sum -18.200 11.473 15.648 26.603 Atomic orbital electron populations 1.21708 0.96333 0.99838 1.00468 1.21823 0.94378 0.98358 1.01718 1.18670 0.94069 0.89709 0.80182 0.96534 1.21534 0.91279 1.39582 1.06888 0.91670 1.25660 1.03124 0.94165 0.94884 1.70004 1.36892 1.37900 1.09745 0.85359 0.79293 0.77992 0.78082 1.19239 1.20122 1.20632 1.46276 1.14395 1.52953 1.18431 1.19900 0.83792 0.80859 0.87782 1.90732 1.51439 1.59620 1.40254 1.20473 0.82703 0.79119 0.88054 1.90771 1.51497 1.57442 1.39927 1.43173 1.15330 1.49894 1.19922 1.18237 0.95640 0.91945 0.87504 1.21143 0.99651 0.99299 0.98427 1.20906 0.96963 0.96219 0.93771 1.28005 0.97793 1.14144 1.18027 1.68414 1.02853 0.88584 0.79486 1.27778 1.08557 1.18227 1.11048 1.92994 1.48301 1.85706 1.65910 1.21379 1.00453 0.89779 0.90755 1.21554 0.93991 1.02845 0.98776 0.94081 0.94398 0.93061 0.90197 0.94258 0.92282 0.75775 0.72445 0.87479 0.87639 0.83531 0.86085 0.92450 0.77512 0.81172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 8.52 71.98 0.61 -4.64 16 2 C -0.12 -5.89 5.45 30.59 0.17 -5.73 16 3 C 0.28 13.85 2.24 44.25 0.10 13.95 16 4 H 0.02 0.96 7.58 -2.39 -0.02 0.95 16 5 C -0.55 -29.46 8.73 25.60 0.22 -29.23 16 6 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 7 C 0.02 1.21 5.29 84.65 0.45 1.66 16 8 N -0.91 -50.29 11.30 21.45 0.24 -50.04 16 9 Si 0.97 42.23 29.54 68.60 2.03 44.25 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 13 N -0.67 -28.81 5.01 -447.53 -2.24 -31.06 16 14 C 0.50 19.45 6.45 87.24 0.56 20.01 16 15 O -0.54 -22.55 13.62 -3.28 -0.04 -22.59 16 16 C 0.51 17.40 7.62 87.24 0.67 18.06 16 17 O -0.52 -19.84 14.16 -3.34 -0.05 -19.89 16 18 N -0.64 -16.47 5.32 -304.83 -1.62 -18.09 16 19 C 0.16 3.83 6.28 38.21 0.24 4.07 16 20 C -0.16 -4.73 8.65 22.40 0.19 -4.54 16 21 C -0.06 -1.52 9.43 22.25 0.21 -1.31 16 22 C -0.48 -7.68 5.61 22.30 0.13 -7.56 16 23 S 1.41 14.37 14.18 -56.49 -0.80 13.57 16 24 C -0.50 -3.55 10.70 113.37 1.21 -2.34 16 25 O -0.93 -25.25 16.89 -148.98 -2.52 -27.77 16 26 C 0.00 -0.04 9.74 22.25 0.22 0.18 16 27 C -0.15 -2.09 9.96 22.40 0.22 -1.87 16 28 H 0.04 1.63 5.65 -2.39 -0.01 1.62 16 29 H 0.04 1.66 7.85 -2.39 -0.02 1.64 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 31 H 0.08 4.22 5.95 -2.39 -0.01 4.21 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 34 H 0.41 16.62 8.01 -92.71 -0.74 15.87 16 35 H 0.43 9.25 8.30 -92.71 -0.77 8.48 16 36 H 0.11 3.65 6.42 -2.91 -0.02 3.63 16 37 H 0.11 3.12 7.45 -2.91 -0.02 3.10 16 38 H 0.15 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.21 -0.88 8.06 -2.91 -0.02 -0.90 16 42 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -82.49 366.10 -0.24 -82.74 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: -0.43 Total: 28.16 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.20 Total: 0.71 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -3.62 Total: -99.19 kcal Atomic # 8 Polarization: -67.63 SS G_CDS: -2.61 Total: -70.24 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 14.37 SS G_CDS: -0.80 Total: 13.57 kcal Total: -82.49 -0.24 -82.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439560665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.862 kcal (2) G-P(sol) polarization free energy of solvation -82.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds