Wall clock time and date at job start Tue Mar 31 2020 21:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47060 * 127.18586 * 3 2 1 5 5 C 1.36694 * 119.99595 * 262.76282 * 4 3 2 6 6 H 1.07999 * 119.99633 * 213.18387 * 5 4 3 7 7 C 1.39152 * 120.00181 * 33.19632 * 5 4 3 8 8 N 1.31295 * 120.00171 * 5.69095 * 7 5 4 9 9 Si 1.86801 * 120.00087 * 185.69375 * 7 5 4 10 10 H 1.48500 * 109.46755 * 89.99682 * 9 7 5 11 11 H 1.48494 * 109.47226 * 209.99625 * 9 7 5 12 12 H 1.48493 * 109.47134 * 329.99873 * 9 7 5 13 13 C 1.34777 * 120.00112 * 82.76229 * 4 3 2 14 14 O 1.21646 * 119.99570 * 175.10948 * 13 4 3 15 15 C 1.47315 * 119.99829 * 355.39188 * 13 4 3 16 16 C 1.36768 * 126.83502 * 184.12765 * 15 13 4 17 17 C 1.42134 * 103.78565 * 179.87483 * 16 15 13 18 18 C 1.48382 * 126.83731 * 180.11481 * 17 16 15 19 19 C 1.39400 * 120.24130 * 5.29825 * 18 17 16 20 20 C 1.37654 * 120.22871 * 180.13912 * 19 18 17 21 21 C 1.39444 * 120.39636 * 359.95462 * 20 19 18 22 22 C 1.39038 * 119.06527 * 359.74931 * 21 20 19 23 23 C 1.37494 * 120.90462 * 0.17788 * 22 21 20 24 24 C 1.51673 * 107.02592 * 180.56511 * 22 21 20 25 25 C 1.54708 * 101.91796 * 15.38901 * 24 22 21 26 26 O 1.36123 * 129.74939 * 179.08553 * 21 20 19 27 27 N 1.31013 * 106.32511 * 0.38341 * 17 16 15 28 28 O 1.20870 * 111.82425 * 359.75098 * 27 17 16 29 29 H 4.40641 * 5.51326 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.46760 * 7.18391 * 3 2 1 31 31 H 1.09005 * 109.46948 * 247.18718 * 3 2 1 32 32 H 0.96997 * 120.00399 * 179.97438 * 8 7 5 33 33 H 1.08005 * 128.10705 * 359.97438 * 16 15 13 34 34 H 1.07991 * 119.88488 * 0.11056 * 19 18 17 35 35 H 1.07995 * 119.80203 * 179.97438 * 20 19 18 36 36 H 1.07998 * 120.05444 * 179.97438 * 23 22 21 37 37 H 1.09000 * 110.94008 * 133.53806 * 24 22 21 38 38 H 1.08990 * 110.94220 * 257.19646 * 24 22 21 39 39 H 1.08998 * 110.74764 * 92.98834 * 25 24 22 40 40 H 1.09001 * 110.74272 * 216.15918 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.8357 -1.1004 5 6 3.5026 0.2596 -2.2839 6 1 4.3062 0.6869 -2.8652 7 6 2.8423 -0.8773 -2.7398 8 7 1.7943 -1.3318 -2.0925 9 14 3.4470 -1.7570 -4.2728 10 1 4.4418 -2.7910 -3.8902 11 1 2.2991 -2.4038 -4.9576 12 1 4.0808 -0.7754 -5.1892 13 6 3.2193 2.1718 -0.9458 14 8 3.7072 2.8559 -1.8255 15 6 2.7276 2.8031 0.2911 16 6 2.6729 4.1425 0.5623 17 6 2.1222 4.2007 1.8714 18 6 1.8393 5.4229 2.6639 19 6 2.0124 6.6839 2.0956 20 6 1.7526 7.8175 2.8319 21 6 1.3134 7.7164 4.1516 22 6 1.1370 6.4554 4.7100 23 6 1.3928 5.3181 3.9809 24 6 0.6469 6.6633 6.1302 25 6 0.2129 8.1480 6.1044 26 8 1.0195 8.6972 5.0487 27 7 1.9194 2.9603 2.2411 28 8 2.2476 2.1760 1.3820 29 1 -1.0501 0.0000 0.0004 30 1 3.0098 -1.0188 -0.1285 31 1 3.0092 0.3993 0.9473 32 1 1.3338 -2.1240 -2.4105 33 1 2.9756 4.9636 -0.0706 34 1 2.3519 6.7718 1.0742 35 1 1.8894 8.7911 2.3849 36 1 1.2515 4.3455 4.4285 37 1 -0.2006 6.0136 6.3488 38 1 1.4521 6.5046 6.8474 39 1 -0.8470 8.2364 5.8663 40 1 0.4354 8.6318 7.0555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490994118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:34 Heat of formation + Delta-G solvation = 99.345212 kcal Electronic energy + Delta-G solvation = -27721.894815 eV Core-core repulsion = 23666.194697 eV Total energy + Delta-G solvation = -4055.700118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.110 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.41220 -41.27402 -38.65204 -37.86809 -35.45539 -33.79649 -32.95383 -32.35536 -31.40482 -31.19458 -29.74531 -29.42777 -26.57219 -25.43176 -24.24113 -23.52760 -22.76195 -21.94202 -21.34928 -19.56985 -17.96393 -17.65186 -17.59874 -17.24563 -16.74005 -16.48071 -16.31768 -15.89223 -15.24210 -14.48072 -14.32715 -14.28553 -14.02641 -13.74624 -13.53859 -13.39359 -13.25006 -12.98087 -12.87269 -12.55230 -12.21842 -12.05634 -12.00365 -11.66010 -11.49701 -11.33749 -11.15870 -10.88431 -10.75972 -10.48341 -10.11865 -9.49870 -9.34731 -9.14374 -9.09266 -8.96327 -8.79463 -8.05869 -7.97953 -6.48906 -4.17923 0.78945 1.13460 1.50679 2.53934 2.99814 3.09656 3.16085 3.20560 3.39312 3.64835 3.69403 3.99473 4.04425 4.07065 4.13231 4.19320 4.28968 4.61352 4.62571 4.68553 4.91973 4.99399 5.01966 5.11039 5.19378 5.36651 5.42155 5.45406 5.47140 5.48517 5.66554 5.75519 5.87743 6.06255 6.14089 6.28668 6.33116 6.35178 6.42407 6.62665 6.92214 7.03121 7.33872 7.86655 8.15843 8.52205 8.85305 8.88800 9.04576 9.60044 10.47842 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.029230 B = 0.002436 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.702904 B =11492.427061 C =12157.688655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.106 4.106 3 C 0.227 3.773 4 N -0.408 5.408 5 C -0.314 4.314 6 H 0.106 0.894 7 C 0.039 3.961 8 N -0.848 5.848 9 Si 0.933 3.067 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.266 1.266 13 C 0.515 3.485 14 O -0.557 6.557 15 C -0.031 4.031 16 C -0.186 4.186 17 C 0.050 3.950 18 C -0.035 4.035 19 C -0.059 4.059 20 C -0.135 4.135 21 C 0.108 3.892 22 C -0.177 4.177 23 C -0.043 4.043 24 C -0.109 4.109 25 C 0.052 3.948 26 O -0.305 6.305 27 N -0.361 5.361 28 O 0.119 5.881 29 H 0.197 0.803 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.275 0.725 33 H 0.176 0.824 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.064 11.638 14.277 18.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.108 4.108 3 C 0.104 3.896 4 N -0.124 5.124 5 C -0.442 4.442 6 H 0.124 0.876 7 C -0.169 4.169 8 N -0.483 5.483 9 Si 0.759 3.241 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.190 1.190 13 C 0.302 3.698 14 O -0.441 6.441 15 C -0.097 4.097 16 C -0.209 4.209 17 C -0.105 4.105 18 C -0.036 4.036 19 C -0.079 4.079 20 C -0.154 4.154 21 C 0.063 3.937 22 C -0.178 4.178 23 C -0.062 4.062 24 C -0.146 4.146 25 C -0.023 4.023 26 O -0.219 6.219 27 N -0.064 5.064 28 O 0.049 5.951 29 H 0.214 0.786 30 H 0.127 0.873 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.193 0.807 34 H 0.158 0.842 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.357 11.412 14.920 19.082 hybrid contribution -0.103 -0.239 -1.184 1.213 sum -3.461 11.173 13.736 18.041 Atomic orbital electron populations 1.24158 0.95264 1.03655 1.04405 1.22737 0.93949 0.97567 0.96543 1.18448 0.85016 0.97748 0.88339 1.43529 1.52929 1.03055 1.12936 1.19683 1.16953 1.09727 0.97837 0.87646 1.25640 0.94442 0.97841 0.98984 1.69899 1.16623 1.22778 1.39011 0.85817 0.78292 0.79259 0.80777 1.19991 1.20706 1.19026 1.16650 0.86651 0.82717 0.83825 1.90703 1.49848 1.62027 1.41516 1.24926 1.01244 0.92826 0.90681 1.22601 1.05868 0.96641 0.95818 1.21660 1.03045 0.91786 0.94009 1.17496 1.03486 0.89763 0.92891 1.20900 0.96902 0.90063 0.99995 1.20134 1.05342 0.99574 0.90333 1.19690 0.96454 0.86952 0.90630 1.20628 1.07474 0.93416 0.96266 1.20315 0.95730 0.97798 0.92388 1.21792 1.02223 0.96740 0.93881 1.23835 0.95278 0.92753 0.90474 1.86815 1.67172 1.34100 1.33778 1.73916 1.18006 1.00936 1.13517 1.85148 1.58537 1.32283 1.19125 0.78579 0.87257 0.90922 0.91435 0.80654 0.84198 0.84817 0.85003 0.88905 0.89039 0.90458 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.46 19.21 29.55 0.57 -4.89 16 2 C -0.11 -2.41 9.71 -37.12 -0.36 -2.77 16 3 C 0.23 5.02 4.75 -6.83 -0.03 4.98 16 4 N -0.41 -10.10 2.56 -119.22 -0.31 -10.40 16 5 C -0.31 -8.16 9.07 -15.04 -0.14 -8.29 16 6 H 0.11 2.80 7.55 -52.49 -0.40 2.41 16 7 C 0.04 0.95 5.15 -17.44 -0.09 0.86 16 8 N -0.85 -21.23 9.32 55.51 0.52 -20.71 16 9 Si 0.93 19.40 29.56 -169.99 -5.02 14.38 16 10 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 13 C 0.51 12.56 7.54 -12.57 -0.09 12.47 16 14 O -0.56 -14.92 16.70 5.24 0.09 -14.84 16 15 C -0.03 -0.65 6.75 -36.42 -0.25 -0.89 16 16 C -0.19 -3.37 10.31 -38.62 -0.40 -3.77 16 17 C 0.05 0.86 7.05 -82.55 -0.58 0.28 16 18 C -0.04 -0.51 5.88 -104.83 -0.62 -1.12 16 19 C -0.06 -0.72 9.57 -39.36 -0.38 -1.10 16 20 C -0.14 -1.52 10.05 -39.35 -0.40 -1.92 16 21 C 0.11 1.28 7.04 -38.84 -0.27 1.01 16 22 C -0.18 -2.03 6.26 -104.12 -0.65 -2.69 16 23 C -0.04 -0.57 9.69 -39.40 -0.38 -0.95 16 24 C -0.11 -0.86 7.12 -26.50 -0.19 -1.05 16 25 C 0.05 0.37 8.01 38.06 0.30 0.67 16 26 O -0.30 -3.32 11.10 -20.13 -0.22 -3.54 16 27 N -0.36 -6.73 11.80 33.40 0.39 -6.34 16 28 O 0.12 2.38 7.10 15.46 0.11 2.49 16 29 H 0.20 3.49 7.80 -54.08 -0.42 3.06 16 30 H 0.11 2.44 7.04 -51.93 -0.37 2.08 16 31 H 0.07 1.44 5.80 -51.93 -0.30 1.14 16 32 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 33 H 0.18 2.80 7.60 -52.48 -0.40 2.40 16 34 H 0.14 1.47 7.25 -52.49 -0.38 1.09 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.13 1.71 7.91 -52.49 -0.42 1.29 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 352.53 15.07 5.31 5.31 Total: -1.00 -30.61 352.53 -7.01 -37.62 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -3.93 Total: 5.19 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -3.95 Total: -9.16 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.61 Total: -37.45 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.03 Total: -15.89 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.61 -7.01 -37.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490994118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.968 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds