Wall clock time and date at job start Tue Mar 31 2020 21:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47060 * 127.18586 * 3 2 1 5 5 C 1.36694 * 119.99595 * 262.76282 * 4 3 2 6 6 H 1.07999 * 119.99633 * 213.18387 * 5 4 3 7 7 C 1.39152 * 120.00181 * 33.19632 * 5 4 3 8 8 N 1.31295 * 120.00171 * 5.69095 * 7 5 4 9 9 Si 1.86801 * 120.00087 * 185.69375 * 7 5 4 10 10 H 1.48500 * 109.46755 * 89.99682 * 9 7 5 11 11 H 1.48494 * 109.47226 * 209.99625 * 9 7 5 12 12 H 1.48493 * 109.47134 * 329.99873 * 9 7 5 13 13 C 1.34777 * 120.00112 * 82.76229 * 4 3 2 14 14 O 1.21646 * 119.99570 * 175.10948 * 13 4 3 15 15 C 1.47315 * 119.99829 * 355.39188 * 13 4 3 16 16 C 1.36768 * 126.83502 * 184.12765 * 15 13 4 17 17 C 1.42134 * 103.78565 * 179.87483 * 16 15 13 18 18 C 1.48382 * 126.83731 * 180.11481 * 17 16 15 19 19 C 1.39400 * 120.24130 * 5.29825 * 18 17 16 20 20 C 1.37654 * 120.22871 * 180.13912 * 19 18 17 21 21 C 1.39444 * 120.39636 * 359.95462 * 20 19 18 22 22 C 1.39038 * 119.06527 * 359.74931 * 21 20 19 23 23 C 1.37494 * 120.90462 * 0.17788 * 22 21 20 24 24 C 1.51673 * 107.02592 * 180.56511 * 22 21 20 25 25 C 1.54708 * 101.91796 * 15.38901 * 24 22 21 26 26 O 1.36123 * 129.74939 * 179.08553 * 21 20 19 27 27 N 1.31013 * 106.32511 * 0.38341 * 17 16 15 28 28 O 1.20870 * 111.82425 * 359.75098 * 27 17 16 29 29 H 4.40641 * 5.51326 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.46760 * 7.18391 * 3 2 1 31 31 H 1.09005 * 109.46948 * 247.18718 * 3 2 1 32 32 H 0.96997 * 120.00399 * 179.97438 * 8 7 5 33 33 H 1.08005 * 128.10705 * 359.97438 * 16 15 13 34 34 H 1.07991 * 119.88488 * 0.11056 * 19 18 17 35 35 H 1.07995 * 119.80203 * 179.97438 * 20 19 18 36 36 H 1.07998 * 120.05444 * 179.97438 * 23 22 21 37 37 H 1.09000 * 110.94008 * 133.53806 * 24 22 21 38 38 H 1.08990 * 110.94220 * 257.19646 * 24 22 21 39 39 H 1.08998 * 110.74764 * 92.98834 * 25 24 22 40 40 H 1.09001 * 110.74272 * 216.15918 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.8357 -1.1004 5 6 3.5026 0.2596 -2.2839 6 1 4.3062 0.6869 -2.8652 7 6 2.8423 -0.8773 -2.7398 8 7 1.7943 -1.3318 -2.0925 9 14 3.4470 -1.7570 -4.2728 10 1 4.4418 -2.7910 -3.8902 11 1 2.2991 -2.4038 -4.9576 12 1 4.0808 -0.7754 -5.1892 13 6 3.2193 2.1718 -0.9458 14 8 3.7072 2.8559 -1.8255 15 6 2.7276 2.8031 0.2911 16 6 2.6729 4.1425 0.5623 17 6 2.1222 4.2007 1.8714 18 6 1.8393 5.4229 2.6639 19 6 2.0124 6.6839 2.0956 20 6 1.7526 7.8175 2.8319 21 6 1.3134 7.7164 4.1516 22 6 1.1370 6.4554 4.7100 23 6 1.3928 5.3181 3.9809 24 6 0.6469 6.6633 6.1302 25 6 0.2129 8.1480 6.1044 26 8 1.0195 8.6972 5.0487 27 7 1.9194 2.9603 2.2411 28 8 2.2476 2.1760 1.3820 29 1 -1.0501 0.0000 0.0004 30 1 3.0098 -1.0188 -0.1285 31 1 3.0092 0.3993 0.9473 32 1 1.3338 -2.1240 -2.4105 33 1 2.9756 4.9636 -0.0706 34 1 2.3519 6.7718 1.0742 35 1 1.8894 8.7911 2.3849 36 1 1.2515 4.3455 4.4285 37 1 -0.2006 6.0136 6.3488 38 1 1.4521 6.5046 6.8474 39 1 -0.8470 8.2364 5.8663 40 1 0.4354 8.6318 7.0555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490994118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:34 Heat of formation + Delta-G solvation = 82.853504 kcal Electronic energy + Delta-G solvation = -27722.609949 eV Core-core repulsion = 23666.194697 eV Total energy + Delta-G solvation = -4056.415252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.110 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.88503 -42.07830 -40.52086 -38.80590 -37.32056 -35.13817 -34.18548 -33.72789 -33.13913 -32.79085 -30.79795 -30.22649 -28.37053 -27.22980 -25.29951 -24.77477 -23.93760 -23.14884 -22.42568 -21.01225 -19.74544 -19.22209 -18.77143 -18.46260 -18.18950 -17.58786 -17.40391 -17.13726 -16.85181 -16.08521 -15.87297 -15.81023 -15.19165 -14.96721 -14.67876 -14.63679 -14.36303 -14.21811 -14.07820 -13.85902 -13.68852 -13.47998 -13.15968 -12.86291 -12.75243 -12.66357 -12.61375 -12.35134 -12.14844 -11.84110 -11.29668 -11.24367 -11.17252 -10.81978 -10.72933 -10.55271 -9.99861 -9.87663 -9.04183 -8.36239 -6.15633 -0.33583 -0.02868 0.23434 1.28644 1.44108 1.45196 1.55895 1.77472 1.95653 2.18947 2.24847 2.32046 2.44752 2.67897 2.82778 2.94372 3.04187 3.32040 3.55677 3.69289 3.81749 3.86828 3.99568 4.07820 4.14953 4.22509 4.23224 4.29053 4.53028 4.62821 4.66728 4.80214 4.81197 4.84386 4.86879 5.01968 5.14587 5.26387 5.37016 5.38734 5.39251 5.44263 5.96790 6.09036 6.25883 6.90842 7.01284 7.15591 7.19287 7.70431 8.59087 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.029230 B = 0.002436 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.702904 B =11492.427061 C =12157.688655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.139 4.139 3 C 0.233 3.767 4 N -0.419 5.419 5 C -0.349 4.349 6 H 0.087 0.913 7 C 0.008 3.992 8 N -0.863 5.863 9 Si 0.997 3.003 10 H -0.261 1.261 11 H -0.277 1.277 12 H -0.273 1.273 13 C 0.510 3.490 14 O -0.593 6.593 15 C -0.056 4.056 16 C -0.169 4.169 17 C 0.068 3.932 18 C -0.066 4.066 19 C -0.056 4.056 20 C -0.138 4.138 21 C 0.107 3.893 22 C -0.183 4.183 23 C -0.050 4.050 24 C -0.108 4.108 25 C 0.047 3.953 26 O -0.317 6.317 27 N -0.369 5.369 28 O 0.107 5.893 29 H 0.228 0.772 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.278 0.722 33 H 0.197 0.803 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.128 0.872 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.159 13.085 15.742 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.141 4.141 3 C 0.111 3.889 4 N -0.135 5.135 5 C -0.477 4.477 6 H 0.105 0.895 7 C -0.198 4.198 8 N -0.497 5.497 9 Si 0.820 3.180 10 H -0.186 1.186 11 H -0.202 1.202 12 H -0.197 1.197 13 C 0.298 3.702 14 O -0.479 6.479 15 C -0.121 4.121 16 C -0.192 4.192 17 C -0.088 4.088 18 C -0.067 4.067 19 C -0.075 4.075 20 C -0.156 4.156 21 C 0.061 3.939 22 C -0.184 4.184 23 C -0.069 4.069 24 C -0.145 4.145 25 C -0.027 4.027 26 O -0.231 6.231 27 N -0.074 5.074 28 O 0.040 5.960 29 H 0.245 0.755 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.214 0.786 34 H 0.172 0.828 35 H 0.174 0.826 36 H 0.146 0.854 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.108 0.892 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.461 12.828 16.412 21.303 hybrid contribution 0.149 -0.484 -1.440 1.526 sum -4.312 12.343 14.972 19.878 Atomic orbital electron populations 1.24973 0.96226 1.02360 1.03098 1.23013 0.94537 0.98778 0.97748 1.18425 0.85260 0.96962 0.88272 1.43687 1.52976 1.03539 1.13251 1.19695 1.17894 1.11103 0.98991 0.89476 1.26352 0.94319 0.97738 1.01408 1.69998 1.16955 1.22886 1.39873 0.84876 0.78009 0.78034 0.77115 1.18614 1.20169 1.19730 1.16976 0.85896 0.82620 0.84678 1.90649 1.51274 1.62810 1.43200 1.24404 1.03471 0.93645 0.90618 1.22956 1.03979 0.96040 0.96237 1.22022 1.01098 0.92193 0.93515 1.17576 1.06294 0.89294 0.93568 1.21074 0.96224 0.89465 1.00744 1.20395 1.04626 1.00220 0.90360 1.19959 0.95568 0.87371 0.90988 1.20958 1.06735 0.92716 0.98022 1.20333 0.96018 0.98354 0.92216 1.21927 1.03129 0.97613 0.91837 1.24168 0.95570 0.92235 0.90687 1.86809 1.67605 1.34348 1.34307 1.73896 1.18624 1.01640 1.13232 1.85127 1.59256 1.32675 1.18976 0.75507 0.88142 0.89246 0.91168 0.78638 0.82772 0.82571 0.85431 0.87390 0.87905 0.89192 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.44 19.21 74.32 1.43 -9.01 16 2 C -0.14 -6.38 9.71 31.12 0.30 -6.08 16 3 C 0.23 10.62 4.75 84.57 0.40 11.02 16 4 N -0.42 -21.53 2.56 -649.32 -1.67 -23.20 16 5 C -0.35 -18.84 9.07 84.16 0.76 -18.07 16 6 H 0.09 4.89 7.55 -2.91 -0.02 4.87 16 7 C 0.01 0.39 5.15 84.99 0.44 0.83 16 8 N -0.86 -43.56 9.32 21.70 0.20 -43.36 16 9 Si 1.00 40.16 29.56 68.60 2.03 42.19 16 10 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 11 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 13 C 0.51 25.85 7.54 86.63 0.65 26.50 16 14 O -0.59 -33.01 16.70 -4.18 -0.07 -33.08 16 15 C -0.06 -2.39 6.75 24.32 0.16 -2.23 16 16 C -0.17 -6.10 10.31 22.89 0.24 -5.86 16 17 C 0.07 2.28 7.05 42.94 0.30 2.58 16 18 C -0.07 -1.83 5.88 -20.00 -0.12 -1.94 16 19 C -0.06 -1.26 9.57 22.41 0.21 -1.05 16 20 C -0.14 -2.77 10.05 22.42 0.23 -2.55 16 21 C 0.11 2.27 7.04 22.75 0.16 2.43 16 22 C -0.18 -3.83 6.26 -19.54 -0.12 -3.96 16 23 C -0.05 -1.26 9.69 22.39 0.22 -1.04 16 24 C -0.11 -1.39 7.12 30.74 0.22 -1.17 16 25 C 0.05 0.51 8.01 72.56 0.58 1.10 16 26 O -0.32 -5.97 11.10 -94.94 -1.05 -7.02 16 27 N -0.37 -13.75 11.80 -48.85 -0.58 -14.33 16 28 O 0.11 4.35 7.10 65.50 0.47 4.81 16 29 H 0.23 7.66 7.80 -4.41 -0.03 7.62 16 30 H 0.10 4.67 7.04 -2.38 -0.02 4.65 16 31 H 0.09 3.68 5.80 -2.38 -0.01 3.67 16 32 H 0.28 13.25 8.31 -92.71 -0.77 12.48 16 33 H 0.20 6.06 7.60 -2.91 -0.02 6.04 16 34 H 0.15 2.93 7.25 -2.92 -0.02 2.91 16 35 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 36 H 0.13 3.23 7.91 -2.91 -0.02 3.21 16 37 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -67.46 352.53 6.49 -60.97 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 1.10 Total: 21.50 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: 6.07 Total: -8.49 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -2.04 Total: -80.88 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.66 Total: -35.29 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -67.46 6.49 -60.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490994118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.819 kcal (2) G-P(sol) polarization free energy of solvation -67.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds