Wall clock time and date at job start Tue Mar 31 2020 21:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46985 * 81.80991 * 3 2 1 5 5 C 1.36871 * 120.00329 * 279.19296 * 4 3 2 6 6 H 1.07999 * 120.00261 * 141.79109 * 5 4 3 7 7 C 1.39046 * 119.99743 * 321.79044 * 5 4 3 8 8 N 1.31364 * 120.00004 * 159.72265 * 7 5 4 9 9 Si 1.86797 * 119.99943 * 339.72507 * 7 5 4 10 10 H 1.48494 * 109.47299 * 90.00662 * 9 7 5 11 11 H 1.48502 * 109.46889 * 210.00137 * 9 7 5 12 12 H 1.48495 * 109.47248 * 330.00395 * 9 7 5 13 13 C 1.34777 * 119.99844 * 99.19281 * 4 3 2 14 14 O 1.21596 * 120.00219 * 177.22908 * 13 4 3 15 15 C 1.47745 * 120.00309 * 357.23063 * 13 4 3 16 16 C 1.39687 * 120.11322 * 316.36440 * 15 13 4 17 17 C 1.37964 * 119.99368 * 180.02562 * 16 15 13 18 18 C 1.38261 * 120.23200 * 359.72272 * 17 16 15 19 19 C 1.38987 * 120.23124 * 0.55225 * 18 17 16 20 20 N 1.39863 * 120.00213 * 179.72444 * 19 18 17 21 21 C 1.34773 * 120.00151 * 215.75990 * 20 19 18 22 22 O 1.21709 * 120.00003 * 355.06990 * 21 20 19 23 23 C 1.46622 * 119.99995 * 175.07435 * 21 20 19 24 24 C 1.36563 * 125.99111 * 179.71485 * 23 21 20 25 25 C 1.40356 * 106.70757 * 179.88318 * 24 23 21 26 26 C 1.35124 * 107.11877 * 0.37687 * 25 24 23 27 27 O 1.33938 * 108.77093 * 359.76267 * 26 25 24 28 28 C 1.38641 * 120.00362 * 359.44860 * 19 18 17 29 29 H 4.40639 * 5.51304 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47301 * 321.80866 * 3 2 1 31 31 H 1.08999 * 109.46775 * 201.80981 * 3 2 1 32 32 H 0.97002 * 120.00349 * 179.97438 * 8 7 5 33 33 H 1.08004 * 120.00469 * 359.97438 * 16 15 13 34 34 H 1.08004 * 119.87999 * 180.02562 * 17 16 15 35 35 H 1.08001 * 119.88692 * 180.27932 * 18 17 16 36 36 H 0.97000 * 119.99576 * 36.03132 * 20 19 18 37 37 H 1.08000 * 126.64535 * 0.02562 * 24 23 21 38 38 H 1.08002 * 126.44029 * 180.13767 * 25 24 23 39 39 H 1.08000 * 125.61873 * 179.74575 * 26 25 24 40 40 H 1.08004 * 120.11694 * 180.24638 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1345 -0.1959 -1.3671 5 6 3.1846 -1.4549 -1.9016 6 1 2.9333 -1.6111 -2.9403 7 6 3.5591 -2.5329 -1.1073 8 7 3.2382 -3.7554 -1.4653 9 14 4.5186 -2.2428 0.4690 10 1 3.5718 -2.0592 1.5981 11 1 5.3909 -3.4136 0.7401 12 1 5.3557 -1.0252 0.3220 13 6 3.5344 0.8631 -2.0986 14 8 3.9869 0.6952 -3.2146 15 6 3.4231 2.2282 -1.5444 16 6 2.2660 2.6165 -0.8650 17 6 2.1645 3.8920 -0.3490 18 6 3.2073 4.7877 -0.4966 19 6 4.3607 4.4132 -1.1757 20 7 5.4103 5.3250 -1.3272 21 6 6.1393 5.3312 -2.4607 22 8 5.9437 4.4864 -3.3147 23 6 7.1682 6.3557 -2.6651 24 6 7.9775 6.4733 -3.7587 25 6 8.8020 7.5865 -3.5327 26 6 8.4700 8.0882 -2.3228 27 8 7.4851 7.3440 -1.8031 28 6 4.4731 3.1339 -1.6982 29 1 -1.0499 0.0002 0.0000 30 1 3.0098 -0.8069 0.6354 31 1 3.0089 0.9549 0.3818 32 1 3.4998 -4.5076 -0.9114 33 1 1.4505 1.9187 -0.7445 34 1 1.2691 4.1902 0.1763 35 1 3.1237 5.7833 -0.0865 36 1 5.6161 5.9503 -0.6147 37 1 7.9808 5.8350 -4.6299 38 1 9.5618 7.9678 -4.1988 39 1 8.9242 8.9477 -1.8521 40 1 5.3701 2.8397 -2.2228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491021227.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:30 Heat of formation + Delta-G solvation = 70.723330 kcal Electronic energy + Delta-G solvation = -27877.979323 eV Core-core repulsion = 23821.038067 eV Total energy + Delta-G solvation = -4056.941256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.110 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.03039 -40.54036 -39.30794 -37.67193 -35.43117 -34.93442 -33.40715 -32.71806 -31.68543 -30.85417 -30.77326 -29.09877 -26.79103 -25.47984 -24.30868 -22.89303 -22.27898 -21.87599 -20.45467 -19.70327 -18.76625 -18.56470 -17.33334 -16.75973 -16.70177 -16.64022 -16.30510 -15.75565 -15.53343 -15.10283 -14.84988 -14.46783 -14.10417 -13.74754 -13.52707 -13.37717 -13.33688 -13.26235 -13.02934 -12.75452 -12.62250 -12.31704 -12.19823 -11.59248 -11.48471 -10.98583 -10.68837 -10.54311 -10.42320 -10.24854 -10.10022 -9.78861 -9.54047 -9.15716 -9.09665 -8.74114 -8.54492 -8.09716 -7.93175 -6.44726 -4.01946 0.65648 1.25343 1.51951 2.02309 2.30387 2.86426 2.90036 2.96659 3.14129 3.19035 3.21239 3.33904 3.59074 4.04663 4.09344 4.30837 4.48899 4.54617 4.67203 4.79976 4.99650 5.08732 5.11981 5.26538 5.38889 5.41174 5.48540 5.52870 5.60655 5.65471 5.74619 5.94958 5.96294 6.07666 6.24344 6.36471 6.44302 6.48344 6.53852 6.74439 7.08189 7.17156 7.48065 7.81759 8.08672 8.21921 8.43377 8.88085 9.21993 9.67323 10.66874 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016201 B = 0.003016 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.880978 B = 9283.116283 C =10134.698046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.170 4.170 3 C 0.182 3.818 4 N -0.452 5.452 5 C -0.312 4.312 6 H 0.109 0.891 7 C 0.064 3.936 8 N -0.855 5.855 9 Si 0.869 3.131 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.259 1.259 13 C 0.503 3.497 14 O -0.544 6.544 15 C -0.087 4.087 16 C -0.117 4.117 17 C -0.107 4.107 18 C -0.135 4.135 19 C 0.128 3.872 20 N -0.662 5.662 21 C 0.597 3.403 22 O -0.484 6.484 23 C -0.078 4.078 24 C -0.114 4.114 25 C -0.224 4.224 26 C -0.006 4.006 27 O -0.166 6.166 28 C -0.075 4.075 29 H 0.215 0.785 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.276 0.724 33 H 0.139 0.861 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.413 0.587 37 H 0.164 0.836 38 H 0.158 0.842 39 H 0.211 0.789 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.262 24.138 6.703 25.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.171 4.171 3 C 0.060 3.940 4 N -0.172 5.172 5 C -0.439 4.439 6 H 0.127 0.873 7 C -0.143 4.143 8 N -0.491 5.491 9 Si 0.697 3.303 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.183 1.183 13 C 0.292 3.708 14 O -0.424 6.424 15 C -0.091 4.091 16 C -0.136 4.136 17 C -0.126 4.126 18 C -0.155 4.155 19 C 0.035 3.965 20 N -0.307 5.307 21 C 0.384 3.616 22 O -0.358 6.358 23 C -0.130 4.130 24 C -0.135 4.135 25 C -0.243 4.243 26 C -0.076 4.076 27 O -0.061 6.061 28 C -0.096 4.096 29 H 0.232 0.768 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.157 0.843 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.250 0.750 37 H 0.181 0.819 38 H 0.176 0.824 39 H 0.228 0.772 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.275 23.242 5.769 24.521 hybrid contribution 0.523 0.384 1.099 1.276 sum 5.797 23.626 6.867 25.277 Atomic orbital electron populations 1.24722 0.95623 1.02275 1.00522 1.23480 0.94702 0.98884 1.00023 1.19167 0.84417 1.02569 0.87870 1.43596 1.54968 1.07084 1.11580 1.19051 1.45644 0.79937 0.99224 0.87342 1.25366 0.95812 0.94833 0.98319 1.69701 1.41401 0.98786 1.39180 0.87119 0.81073 0.79166 0.82991 1.19637 1.20877 1.18334 1.18163 0.81734 0.83610 0.87280 1.90700 1.47080 1.85187 1.19476 1.20253 0.94780 0.95630 0.98444 1.21877 0.98065 0.96994 0.96655 1.20832 0.98243 0.93121 1.00361 1.20896 0.92102 0.99964 1.02578 1.17501 0.88257 0.89009 1.01709 1.43207 1.31993 1.37046 1.18459 1.16647 0.79850 0.82901 0.82183 1.91024 1.65778 1.35784 1.43263 1.21953 1.03776 0.94427 0.92865 1.22069 0.94441 0.98215 0.98771 1.21900 1.04623 0.99033 0.98781 1.24430 0.90633 0.97479 0.95080 1.84050 1.44849 1.34428 1.42815 1.21282 0.99921 0.90146 0.98277 0.76845 0.89413 0.88617 0.91349 0.84322 0.85318 0.85723 0.75022 0.81883 0.82428 0.77227 0.83697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.59 19.01 29.55 0.56 -3.03 16 2 C -0.17 -3.34 11.01 -37.12 -0.41 -3.75 16 3 C 0.18 3.87 4.47 -6.83 -0.03 3.84 16 4 N -0.45 -11.47 2.16 -119.05 -0.26 -11.73 16 5 C -0.31 -9.04 9.24 -15.00 -0.14 -9.18 16 6 H 0.11 3.52 7.95 -52.49 -0.42 3.10 16 7 C 0.06 1.78 5.36 -17.45 -0.09 1.69 16 8 N -0.86 -24.87 13.95 55.50 0.77 -24.09 16 9 Si 0.87 20.48 25.15 -169.99 -4.28 16.21 16 10 H -0.27 -5.83 6.48 56.52 0.37 -5.46 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.26 -6.07 7.11 56.52 0.40 -5.66 16 13 C 0.50 12.76 7.23 -12.37 -0.09 12.67 16 14 O -0.54 -15.97 16.86 5.28 0.09 -15.88 16 15 C -0.09 -1.77 4.94 -104.99 -0.52 -2.29 16 16 C -0.12 -1.97 7.56 -39.14 -0.30 -2.27 16 17 C -0.11 -1.40 10.02 -39.67 -0.40 -1.79 16 18 C -0.13 -1.65 9.96 -39.30 -0.39 -2.04 16 19 C 0.13 1.89 6.28 -83.77 -0.53 1.36 16 20 N -0.66 -8.06 5.32 -11.09 -0.06 -8.11 16 21 C 0.60 8.45 7.62 -12.88 -0.10 8.35 16 22 O -0.48 -8.94 14.34 5.18 0.07 -8.86 16 23 C -0.08 -0.89 7.13 -36.81 -0.26 -1.16 16 24 C -0.11 -1.19 10.62 -39.39 -0.42 -1.61 16 25 C -0.22 -1.66 10.87 -39.89 -0.43 -2.09 16 26 C -0.01 -0.04 12.08 29.62 0.36 0.32 16 27 O -0.17 -1.48 10.41 4.97 0.05 -1.43 16 28 C -0.08 -1.43 8.32 -38.96 -0.32 -1.76 16 29 H 0.21 2.64 7.80 -54.10 -0.42 2.22 16 30 H 0.09 1.93 2.68 -51.93 -0.14 1.79 16 31 H 0.10 1.76 5.53 -51.93 -0.29 1.47 16 32 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.14 2.38 4.38 -52.48 -0.23 2.15 16 34 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.41 3.53 8.59 -40.82 -0.35 3.18 16 37 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.21 0.38 8.06 -52.49 -0.42 -0.04 16 40 H 0.15 3.08 6.28 -52.48 -0.33 2.75 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -36.60 352.42 -5.26 -41.85 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -3.46 Total: 9.47 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -3.51 Total: -2.72 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.46 Total: -43.94 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: 0.22 Total: -26.18 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.28 Total: 16.21 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.60 -5.26 -41.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491021227.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.577 kcal (2) G-P(sol) polarization free energy of solvation -36.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds