Wall clock time and date at job start Tue Mar 31 2020 21:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46985 * 81.80991 * 3 2 1 5 5 C 1.36871 * 120.00329 * 279.19296 * 4 3 2 6 6 H 1.07999 * 120.00261 * 141.79109 * 5 4 3 7 7 C 1.39046 * 119.99743 * 321.79044 * 5 4 3 8 8 N 1.31364 * 120.00004 * 159.72265 * 7 5 4 9 9 Si 1.86797 * 119.99943 * 339.72507 * 7 5 4 10 10 H 1.48494 * 109.47299 * 90.00662 * 9 7 5 11 11 H 1.48502 * 109.46889 * 210.00137 * 9 7 5 12 12 H 1.48495 * 109.47248 * 330.00395 * 9 7 5 13 13 C 1.34777 * 119.99844 * 99.19281 * 4 3 2 14 14 O 1.21596 * 120.00219 * 177.22908 * 13 4 3 15 15 C 1.47745 * 120.00309 * 357.23063 * 13 4 3 16 16 C 1.39687 * 120.11322 * 316.36440 * 15 13 4 17 17 C 1.37964 * 119.99368 * 180.02562 * 16 15 13 18 18 C 1.38261 * 120.23200 * 359.72272 * 17 16 15 19 19 C 1.38987 * 120.23124 * 0.55225 * 18 17 16 20 20 N 1.39863 * 120.00213 * 179.72444 * 19 18 17 21 21 C 1.34773 * 120.00151 * 215.75990 * 20 19 18 22 22 O 1.21709 * 120.00003 * 355.06990 * 21 20 19 23 23 C 1.46622 * 119.99995 * 175.07435 * 21 20 19 24 24 C 1.36563 * 125.99111 * 179.71485 * 23 21 20 25 25 C 1.40356 * 106.70757 * 179.88318 * 24 23 21 26 26 C 1.35124 * 107.11877 * 0.37687 * 25 24 23 27 27 O 1.33938 * 108.77093 * 359.76267 * 26 25 24 28 28 C 1.38641 * 120.00362 * 359.44860 * 19 18 17 29 29 H 4.40639 * 5.51304 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47301 * 321.80866 * 3 2 1 31 31 H 1.08999 * 109.46775 * 201.80981 * 3 2 1 32 32 H 0.97002 * 120.00349 * 179.97438 * 8 7 5 33 33 H 1.08004 * 120.00469 * 359.97438 * 16 15 13 34 34 H 1.08004 * 119.87999 * 180.02562 * 17 16 15 35 35 H 1.08001 * 119.88692 * 180.27932 * 18 17 16 36 36 H 0.97000 * 119.99576 * 36.03132 * 20 19 18 37 37 H 1.08000 * 126.64535 * 0.02562 * 24 23 21 38 38 H 1.08002 * 126.44029 * 180.13767 * 25 24 23 39 39 H 1.08000 * 125.61873 * 179.74575 * 26 25 24 40 40 H 1.08004 * 120.11694 * 180.24638 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1345 -0.1959 -1.3671 5 6 3.1846 -1.4549 -1.9016 6 1 2.9333 -1.6111 -2.9403 7 6 3.5591 -2.5329 -1.1073 8 7 3.2382 -3.7554 -1.4653 9 14 4.5186 -2.2428 0.4690 10 1 3.5718 -2.0592 1.5981 11 1 5.3909 -3.4136 0.7401 12 1 5.3557 -1.0252 0.3220 13 6 3.5344 0.8631 -2.0986 14 8 3.9869 0.6952 -3.2146 15 6 3.4231 2.2282 -1.5444 16 6 2.2660 2.6165 -0.8650 17 6 2.1645 3.8920 -0.3490 18 6 3.2073 4.7877 -0.4966 19 6 4.3607 4.4132 -1.1757 20 7 5.4103 5.3250 -1.3272 21 6 6.1393 5.3312 -2.4607 22 8 5.9437 4.4864 -3.3147 23 6 7.1682 6.3557 -2.6651 24 6 7.9775 6.4733 -3.7587 25 6 8.8020 7.5865 -3.5327 26 6 8.4700 8.0882 -2.3228 27 8 7.4851 7.3440 -1.8031 28 6 4.4731 3.1339 -1.6982 29 1 -1.0499 0.0002 0.0000 30 1 3.0098 -0.8069 0.6354 31 1 3.0089 0.9549 0.3818 32 1 3.4998 -4.5076 -0.9114 33 1 1.4505 1.9187 -0.7445 34 1 1.2691 4.1902 0.1763 35 1 3.1237 5.7833 -0.0865 36 1 5.6161 5.9503 -0.6147 37 1 7.9808 5.8350 -4.6299 38 1 9.5618 7.9678 -4.1988 39 1 8.9242 8.9477 -1.8521 40 1 5.3701 2.8397 -2.2228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491021227.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:30 Heat of formation + Delta-G solvation = 43.329853 kcal Electronic energy + Delta-G solvation = -27879.167193 eV Core-core repulsion = 23821.038067 eV Total energy + Delta-G solvation = -4058.129126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.110 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.71432 -41.79986 -40.89510 -39.08508 -37.37704 -36.12596 -34.61896 -34.09360 -33.44981 -32.15709 -31.80261 -30.10612 -28.49608 -27.38680 -25.29773 -24.44147 -23.18139 -22.70206 -21.38474 -21.29324 -20.28632 -19.72632 -18.83254 -18.44978 -17.96886 -17.47033 -17.43495 -17.20378 -17.07808 -16.37378 -16.09638 -15.97609 -15.52216 -15.23536 -15.09254 -14.69116 -14.55640 -14.29613 -14.17812 -14.10174 -14.00361 -13.74350 -13.59786 -13.02089 -12.93645 -12.80405 -12.51679 -12.02343 -11.75916 -11.40503 -11.33729 -11.26927 -11.10524 -10.94707 -10.58423 -10.05455 -9.93835 -9.81269 -9.26652 -8.61727 -6.26825 -0.25230 0.00793 0.34170 1.07675 1.22788 1.34684 1.37802 1.47706 1.66472 1.80024 1.88717 1.96022 2.04994 2.08238 2.62573 2.79111 2.89251 3.54109 3.57871 3.71314 3.89744 3.93389 4.05827 4.12148 4.15136 4.20580 4.31735 4.41129 4.44758 4.55363 4.83084 4.87207 4.90979 5.08109 5.13921 5.21944 5.30294 5.35677 5.41315 5.46594 5.75481 5.88938 5.91430 6.23985 6.39915 6.70327 6.76046 6.83607 7.08501 7.65160 8.55313 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016201 B = 0.003016 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.880978 B = 9283.116283 C =10134.698046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.232 4.232 3 C 0.185 3.815 4 N -0.459 5.459 5 C -0.337 4.337 6 H 0.045 0.955 7 C 0.020 3.980 8 N -0.899 5.899 9 Si 0.937 3.063 10 H -0.227 1.227 11 H -0.274 1.274 12 H -0.263 1.263 13 C 0.495 3.505 14 O -0.610 6.610 15 C -0.118 4.118 16 C -0.119 4.119 17 C -0.087 4.087 18 C -0.102 4.102 19 C 0.130 3.870 20 N -0.645 5.645 21 C 0.594 3.406 22 O -0.544 6.544 23 C -0.108 4.108 24 C -0.124 4.124 25 C -0.237 4.237 26 C 0.024 3.976 27 O -0.164 6.164 28 C -0.099 4.099 29 H 0.260 0.740 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.284 0.716 33 H 0.136 0.864 34 H 0.180 0.820 35 H 0.181 0.819 36 H 0.434 0.566 37 H 0.150 0.850 38 H 0.184 0.816 39 H 0.264 0.736 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.541 29.192 11.305 31.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.233 4.233 3 C 0.064 3.936 4 N -0.178 5.178 5 C -0.465 4.465 6 H 0.063 0.937 7 C -0.184 4.184 8 N -0.535 5.535 9 Si 0.759 3.241 10 H -0.152 1.152 11 H -0.200 1.200 12 H -0.187 1.187 13 C 0.286 3.714 14 O -0.495 6.495 15 C -0.121 4.121 16 C -0.138 4.138 17 C -0.105 4.105 18 C -0.122 4.122 19 C 0.037 3.963 20 N -0.292 5.292 21 C 0.384 3.616 22 O -0.422 6.422 23 C -0.160 4.160 24 C -0.145 4.145 25 C -0.255 4.255 26 C -0.045 4.045 27 O -0.059 6.059 28 C -0.120 4.120 29 H 0.276 0.724 30 H 0.098 0.902 31 H 0.141 0.859 32 H 0.094 0.906 33 H 0.154 0.846 34 H 0.197 0.803 35 H 0.198 0.802 36 H 0.275 0.725 37 H 0.168 0.832 38 H 0.201 0.799 39 H 0.279 0.721 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.524 28.328 10.448 30.530 hybrid contribution 0.739 -0.980 -0.433 1.302 sum 5.263 27.347 10.015 29.595 Atomic orbital electron populations 1.25731 0.96388 0.99117 0.96981 1.23380 0.94926 1.01856 1.03137 1.19174 0.86106 1.03576 0.84752 1.43650 1.55259 1.05644 1.13267 1.18607 1.47959 0.82576 0.97322 0.93666 1.26130 0.95815 0.93937 1.02496 1.69801 1.42459 0.99867 1.41403 0.86054 0.79831 0.78941 0.79248 1.15229 1.20028 1.18715 1.19127 0.79969 0.85885 0.86440 1.90628 1.49725 1.86706 1.22401 1.19810 0.97527 0.92919 1.01890 1.21913 0.96284 0.99055 0.96532 1.21350 0.99908 0.90819 0.98405 1.21480 0.89625 1.01871 0.99256 1.17598 0.90002 0.87597 1.01143 1.43072 1.31062 1.36492 1.18534 1.17030 0.80020 0.82710 0.81848 1.91009 1.67684 1.38274 1.45277 1.21361 1.04680 0.95757 0.94191 1.22297 0.94918 0.99088 0.98217 1.22230 1.05053 0.98139 1.00118 1.25494 0.88039 0.96809 0.94165 1.84044 1.45648 1.33929 1.42270 1.21060 0.98691 0.92419 0.99870 0.72411 0.90219 0.85929 0.90572 0.84615 0.80293 0.80175 0.72531 0.83218 0.79874 0.72082 0.87691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.07 19.01 74.32 1.41 -3.65 16 2 C -0.23 -8.89 11.01 31.13 0.34 -8.54 16 3 C 0.18 7.91 4.47 84.58 0.38 8.29 16 4 N -0.46 -24.89 2.16 -648.81 -1.40 -26.29 16 5 C -0.34 -21.32 9.24 84.10 0.78 -20.54 16 6 H 0.05 3.33 7.95 -2.91 -0.02 3.31 16 7 C 0.02 1.18 5.36 84.96 0.46 1.63 16 8 N -0.90 -55.13 13.95 21.68 0.30 -54.82 16 9 Si 0.94 43.37 25.15 68.60 1.73 45.09 16 10 H -0.23 -9.02 6.48 99.48 0.64 -8.37 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 13 C 0.49 27.39 7.23 86.76 0.63 28.02 16 14 O -0.61 -40.16 16.86 -4.02 -0.07 -40.22 16 15 C -0.12 -5.02 4.94 -20.11 -0.10 -5.12 16 16 C -0.12 -3.83 7.56 22.56 0.17 -3.66 16 17 C -0.09 -1.82 10.02 22.21 0.22 -1.60 16 18 C -0.10 -1.98 9.96 22.45 0.22 -1.75 16 19 C 0.13 3.66 6.28 38.14 0.24 3.90 16 20 N -0.65 -14.87 5.32 -307.22 -1.64 -16.51 16 21 C 0.59 17.45 7.62 86.43 0.66 18.11 16 22 O -0.54 -22.09 14.34 -4.38 -0.06 -22.15 16 23 C -0.11 -2.44 7.13 24.07 0.17 -2.27 16 24 C -0.12 -2.62 10.62 22.39 0.24 -2.38 16 25 C -0.24 -2.91 10.87 22.07 0.24 -2.67 16 26 C 0.02 0.20 12.08 67.10 0.81 1.01 16 27 O -0.16 -2.45 10.41 -5.14 -0.05 -2.51 16 28 C -0.10 -3.98 8.32 22.68 0.19 -3.79 16 29 H 0.26 5.11 7.80 -4.42 -0.03 5.07 16 30 H 0.08 3.46 2.68 -2.39 -0.01 3.45 16 31 H 0.12 4.43 5.53 -2.39 -0.01 4.42 16 32 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 33 H 0.14 4.47 4.38 -2.91 -0.01 4.46 16 34 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.43 6.06 8.59 -92.71 -0.80 5.26 16 37 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 38 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 39 H 0.26 -0.75 8.06 -2.91 -0.02 -0.77 16 40 H 0.11 5.02 6.28 -2.91 -0.02 5.00 16 Total: -1.00 -96.47 352.42 6.13 -90.34 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.27 Total: 22.09 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 7.06 Total: 4.98 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -2.73 Total: -97.62 kcal Atomic # 8 Polarization: -64.70 SS G_CDS: -0.18 Total: -64.88 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.73 Total: 45.09 kcal Total: -96.47 6.13 -90.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491021227.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.671 kcal (2) G-P(sol) polarization free energy of solvation -96.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds