Wall clock time and date at job start Tue Mar 31 2020 21:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47084 * 2 1 4 4 N 1.46506 * 109.46662 * 119.99779 * 2 1 3 5 5 C 1.46497 * 120.00189 * 299.99951 * 4 2 1 6 6 C 1.50708 * 109.47266 * 275.00498 * 5 4 2 7 7 H 1.08003 * 119.99484 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00002 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00159 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99792 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47191 * 89.99888 * 10 8 6 12 12 H 1.48504 * 109.46879 * 209.99950 * 10 8 6 13 13 H 1.48500 * 109.47226 * 329.99492 * 10 8 6 14 14 S 1.65598 * 119.99529 * 120.00162 * 4 2 1 15 15 O 1.42091 * 104.27990 * 333.92616 * 14 4 2 16 16 O 1.42103 * 104.27476 * 206.06474 * 14 4 2 17 17 C 1.81405 * 104.44813 * 89.99946 * 14 4 2 18 18 C 1.50705 * 109.46736 * 179.97438 * 17 14 4 19 19 N 1.29740 * 126.29138 * 269.99331 * 18 17 14 20 20 O 1.41361 * 109.74059 * 180.02562 * 19 18 17 21 21 C 1.34820 * 109.32695 * 0.02562 * 20 19 18 22 22 C 1.38983 * 133.44621 * 179.97438 * 21 20 19 23 23 C 1.37794 * 119.79420 * 180.02562 * 22 21 20 24 24 C 1.38785 * 120.59884 * 0.02562 * 23 22 21 25 25 C 1.36622 * 120.51766 * 359.97438 * 24 23 22 26 26 C 1.39679 * 119.79071 * 0.02562 * 25 24 23 27 27 H 1.08997 * 109.47363 * 300.00695 * 1 2 3 28 28 H 1.09010 * 109.46693 * 59.99771 * 1 2 3 29 29 H 1.08993 * 109.47206 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47084 * 239.99731 * 2 1 3 31 31 H 1.09002 * 109.47114 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46931 * 299.99611 * 3 2 1 33 33 H 1.09002 * 109.47265 * 60.00080 * 3 2 1 34 34 H 1.09004 * 109.47213 * 34.99657 * 5 4 2 35 35 H 1.08998 * 109.47071 * 155.00315 * 5 4 2 36 36 H 0.97005 * 120.00154 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.47263 * 60.00179 * 17 14 4 38 38 H 1.08996 * 109.46963 * 299.99311 * 17 14 4 39 39 H 1.08003 * 120.10178 * 359.97438 * 22 21 20 40 40 H 1.08005 * 119.70221 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.74182 * 179.72896 * 24 23 22 42 42 H 1.08005 * 120.10555 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.6643 -0.1901 2.5268 6 6 2.6337 0.8907 2.9313 7 1 3.4336 1.1758 2.2640 8 6 2.4999 1.5146 4.1534 9 7 1.5260 1.1670 4.9660 10 14 3.7019 2.8537 4.6550 11 1 3.1896 4.1727 4.2047 12 1 3.8495 2.8582 6.1327 13 1 5.0221 2.5946 4.0265 14 16 2.9703 -2.0370 1.0443 15 8 2.6121 -2.5787 -0.2195 16 8 2.7431 -2.7640 2.2440 17 6 4.6648 -1.3908 1.0029 18 6 5.6356 -2.5354 0.8657 19 7 6.1855 -3.1964 1.8372 20 8 7.0376 -4.1952 1.3129 21 6 7.0091 -4.1439 -0.0340 22 6 7.6413 -4.8762 -1.0319 23 6 7.4032 -4.5772 -2.3557 24 6 6.5373 -3.5498 -2.7033 25 6 5.9060 -2.8180 -1.7376 26 6 6.1335 -3.1049 -0.3896 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 0.6538 0.2181 2.5045 35 1 1.7103 -1.0074 3.2465 36 1 1.4316 1.6063 5.8258 37 1 4.8700 -0.8495 1.9265 38 1 4.7757 -0.7162 0.1539 39 1 8.3177 -5.6766 -0.7704 40 1 7.8956 -5.1469 -3.1300 41 1 6.3642 -3.3244 -3.7452 42 1 5.2338 -2.0197 -2.0155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000544843424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:21 Heat of formation + Delta-G solvation = -5.939154 kcal Electronic energy + Delta-G solvation = -27922.243606 eV Core-core repulsion = 23997.421967 eV Total energy + Delta-G solvation = -3924.821639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.93464 -37.93898 -37.07285 -36.69669 -35.52455 -34.88663 -32.89621 -30.88140 -30.74002 -30.29352 -29.17410 -27.08663 -26.60359 -23.51300 -22.91806 -22.89539 -21.09668 -20.25250 -18.26198 -17.77823 -17.51115 -17.30034 -16.56827 -16.32076 -15.77022 -15.70823 -15.55419 -14.67726 -14.42815 -14.14325 -13.90587 -13.78699 -13.52575 -13.16878 -12.96224 -12.51967 -12.45806 -12.42274 -12.21097 -11.94677 -11.91087 -11.68196 -11.55001 -11.47624 -11.35751 -11.25830 -11.16160 -11.03435 -10.87505 -10.58098 -10.46002 -10.34331 -9.94409 -9.68236 -9.18762 -8.82669 -8.54616 -8.15918 -6.17252 -4.24409 0.28092 0.63660 1.05205 1.88919 2.31408 3.10591 3.20896 3.29747 3.30100 3.36530 3.67042 3.99343 4.22900 4.31010 4.31373 4.56219 4.66032 4.82346 4.95249 5.08819 5.11775 5.17192 5.24314 5.36995 5.58015 5.60485 5.62772 5.71379 5.87137 5.90637 5.97735 6.09532 6.09916 6.22398 6.37706 6.38015 6.49260 6.70045 7.01985 7.05786 7.30296 7.35403 7.58211 7.78115 8.06384 8.78673 9.41687 10.90568 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013696 B = 0.004158 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.884464 B = 6732.270499 C = 7642.023514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.146 3.854 3 C -0.161 4.161 4 N -0.971 5.971 5 C 0.239 3.761 6 C -0.547 4.547 7 H 0.064 0.936 8 C 0.068 3.932 9 N -0.885 5.885 10 Si 0.890 3.110 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.274 1.274 14 S 2.613 3.387 15 O -0.962 6.962 16 O -0.935 6.935 17 C -0.577 4.577 18 C 0.137 3.863 19 N -0.260 5.260 20 O -0.086 6.086 21 C 0.084 3.916 22 C -0.128 4.128 23 C -0.060 4.060 24 C -0.150 4.150 25 C -0.030 4.030 26 C -0.194 4.194 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.266 0.734 37 H 0.170 0.830 38 H 0.153 0.847 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.673 -5.360 -16.504 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 C -0.220 4.220 4 N -0.811 5.811 5 C 0.118 3.882 6 C -0.587 4.587 7 H 0.082 0.918 8 C -0.136 4.136 9 N -0.522 5.522 10 Si 0.718 3.282 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.199 1.199 14 S 2.700 3.300 15 O -0.951 6.951 16 O -0.925 6.925 17 C -0.700 4.700 18 C -0.045 4.045 19 N -0.003 5.003 20 O -0.097 6.097 21 C 0.030 3.970 22 C -0.147 4.147 23 C -0.080 4.080 24 C -0.168 4.168 25 C -0.050 4.050 26 C -0.198 4.198 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.188 0.812 38 H 0.171 0.829 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.508 -6.430 -14.996 17.961 hybrid contribution 1.159 1.668 -0.178 2.038 sum 8.666 -4.763 -15.174 18.112 Atomic orbital electron populations 1.22073 0.95109 1.01980 1.02279 1.20736 0.95041 0.93735 0.86534 1.22259 1.00842 0.96123 1.02741 1.57561 1.61693 1.47594 1.14234 1.19317 0.97497 0.95576 0.75845 1.21583 1.14252 1.20613 1.02210 0.91784 1.24930 0.95482 0.97024 0.96193 1.69922 1.30876 1.41631 1.09787 0.86624 0.81418 0.82105 0.78054 1.20509 1.21034 1.19861 1.05055 0.75685 0.75001 0.74233 1.93537 1.80634 1.76981 1.43994 1.93611 1.82643 1.69359 1.46910 1.29841 1.21856 1.03846 1.14500 1.23468 0.95678 0.94806 0.90558 1.80086 1.04373 0.99622 1.16194 1.89189 1.56904 1.47907 1.15731 1.20346 0.95805 0.95411 0.85444 1.20060 1.03041 1.01732 0.89900 1.21171 0.95859 0.95973 0.94951 1.20824 0.98928 0.97186 0.99891 1.20559 0.96517 0.98339 0.89615 1.20677 1.03886 1.00480 0.94723 0.91217 0.92310 0.92734 0.89923 0.93105 0.93278 0.89411 0.93402 0.92726 0.92461 0.81200 0.82858 0.84173 0.84151 0.84501 0.84371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.16 37.16 0.34 -2.00 16 2 C 0.15 2.34 3.19 -67.92 -0.22 2.12 16 3 C -0.16 -2.42 8.21 37.16 0.30 -2.11 16 4 N -0.97 -18.67 2.66 -108.57 -0.29 -18.96 16 5 C 0.24 5.58 4.98 -5.19 -0.03 5.55 16 6 C -0.55 -13.32 7.53 -34.44 -0.26 -13.58 16 7 H 0.06 1.45 7.07 -52.48 -0.37 1.08 16 8 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.88 -24.47 13.29 55.43 0.74 -23.73 16 10 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 14 S 2.61 50.13 5.40 -107.50 -0.58 49.55 16 15 O -0.96 -18.28 16.57 -57.54 -0.95 -19.24 16 16 O -0.94 -21.83 16.53 -57.54 -0.95 -22.78 16 17 C -0.58 -9.33 6.78 36.01 0.24 -9.08 16 18 C 0.14 2.35 6.72 -80.12 -0.54 1.81 16 19 N -0.26 -4.92 12.81 34.91 0.45 -4.47 16 20 O -0.09 -1.47 12.06 7.68 0.09 -1.37 16 21 C 0.08 1.22 7.48 -38.47 -0.29 0.93 16 22 C -0.13 -1.32 10.07 -39.47 -0.40 -1.72 16 23 C -0.06 -0.49 10.02 -39.54 -0.40 -0.89 16 24 C -0.15 -1.34 9.97 -39.96 -0.40 -1.74 16 25 C -0.03 -0.35 10.05 -39.63 -0.40 -0.75 16 26 C -0.19 -2.88 6.32 -105.17 -0.67 -3.55 16 27 H 0.07 1.14 6.69 -51.93 -0.35 0.80 16 28 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.18 6.87 -51.93 -0.36 0.82 16 31 H 0.05 0.72 7.93 -51.93 -0.41 0.31 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 1.56 6.65 -51.93 -0.35 1.21 16 34 H 0.05 1.15 6.45 -51.93 -0.33 0.82 16 35 H 0.05 1.44 6.82 -51.93 -0.35 1.08 16 36 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.17 2.85 8.14 -51.92 -0.42 2.42 16 38 H 0.15 1.86 8.14 -51.93 -0.42 1.44 16 39 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.14 0.65 8.06 -52.48 -0.42 0.22 16 41 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.14 1.35 8.06 -52.48 -0.42 0.92 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -32.40 365.85 -9.26 -41.66 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.46 Total: 2.14 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -2.79 Total: -23.36 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.89 Total: -47.16 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -1.81 Total: -43.40 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 50.13 SS G_CDS: -0.58 Total: 49.55 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.40 -9.26 -41.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544843424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.716 kcal (2) G-P(sol) polarization free energy of solvation -32.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds