Wall clock time and date at job start Tue Mar 31 2020 21:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 119.99865 * 2 1 4 4 N 1.46490 * 109.47314 * 125.00184 * 3 2 1 5 5 C 1.46497 * 120.00322 * 270.00006 * 4 3 2 6 6 C 1.50707 * 109.47162 * 269.99844 * 5 4 3 7 7 H 1.07998 * 119.99576 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00057 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99930 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99982 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47235 * 59.99855 * 10 8 6 12 12 H 1.48500 * 109.47168 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47142 * 299.99797 * 10 8 6 14 14 C 1.34780 * 120.00111 * 89.99439 * 4 3 2 15 15 O 1.21280 * 120.00423 * 179.97438 * 14 4 3 16 16 C 1.50701 * 119.99795 * 0.02562 * 14 4 3 17 17 C 1.50703 * 109.47064 * 179.97438 * 16 14 4 18 18 C 1.38234 * 119.99770 * 269.72517 * 17 16 14 19 19 C 1.38239 * 119.99901 * 179.76875 * 18 17 16 20 20 C 1.38240 * 119.99645 * 0.50240 * 19 18 17 21 21 S 1.76203 * 119.99680 * 179.72904 * 20 19 18 22 22 N 1.65606 * 107.21600 * 270.02297 * 21 20 19 23 23 O 1.42092 * 106.40524 * 23.56092 * 21 20 19 24 24 O 1.42095 * 106.40222 * 156.48759 * 21 20 19 25 25 C 1.38227 * 120.00205 * 359.74956 * 20 19 18 26 26 C 1.38232 * 119.99860 * 89.99959 * 17 16 14 27 27 H 1.07993 * 120.00154 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.99624 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00094 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.47431 * 4.99991 * 3 2 1 31 31 H 1.09002 * 109.47019 * 245.00223 * 3 2 1 32 32 H 1.09000 * 109.47018 * 29.99405 * 5 4 3 33 33 H 1.09000 * 109.47828 * 149.99700 * 5 4 3 34 34 H 0.97001 * 119.99961 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47060 * 299.99722 * 16 14 4 36 36 H 1.09001 * 109.47380 * 59.99809 * 16 14 4 37 37 H 1.08001 * 120.00330 * 359.97438 * 18 17 16 38 38 H 1.08001 * 119.99843 * 180.23314 * 19 18 17 39 39 H 0.96996 * 120.00167 * 150.00301 * 22 21 20 40 40 H 0.97003 * 120.00162 * 330.00406 * 22 21 20 41 41 H 1.07996 * 120.00251 * 179.97438 * 25 20 19 42 42 H 1.07998 * 120.00407 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1313 5 6 2.5590 1.8650 2.4248 6 6 2.8444 3.3437 2.4803 7 1 3.3041 3.8369 1.6367 8 6 2.5186 4.0668 3.6081 9 7 1.9584 3.4661 4.6353 10 14 2.8717 5.8998 3.6767 11 1 2.1358 6.5869 2.5850 12 1 2.4300 6.4403 4.9874 13 1 4.3295 6.1296 3.5119 14 6 4.2497 0.8662 0.9823 15 8 5.0201 0.8888 1.9187 16 6 4.6972 0.3183 -0.3484 17 6 6.1318 -0.1325 -0.2492 18 6 7.1553 0.7512 -0.5360 19 6 8.4714 0.3391 -0.4404 20 6 8.7636 -0.9598 -0.0682 21 16 10.4409 -1.4871 0.0467 22 7 10.8724 -2.0762 -1.4396 23 8 11.2168 -0.3150 0.2544 24 8 10.4532 -2.5951 0.9364 25 6 7.7399 -1.8450 0.2135 26 6 6.4239 -1.4314 0.1229 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5399 0.9354 0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 1.4889 1.6967 2.5459 33 1 3.0991 1.3604 3.2259 34 1 1.7288 3.9749 5.4286 35 1 4.0680 -0.5285 -0.6228 36 1 4.6125 1.0952 -1.1083 37 1 6.9270 1.7646 -0.8314 38 1 9.2711 1.0306 -0.6608 39 1 11.7933 -2.0134 -1.7376 40 1 10.2042 -2.4842 -2.0124 41 1 7.9682 -2.8598 0.5039 42 1 5.6242 -2.1232 0.3422 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000553127501.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:57 Heat of formation + Delta-G solvation = -63.455857 kcal Electronic energy + Delta-G solvation = -26432.081411 eV Core-core repulsion = 22504.765660 eV Total energy + Delta-G solvation = -3927.315751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.92623 -38.65133 -37.30307 -35.97692 -35.75961 -33.50531 -33.40889 -32.90168 -32.10842 -31.15623 -28.75230 -27.02101 -25.46074 -23.26604 -23.00099 -21.81625 -20.04609 -19.73483 -18.61356 -18.42567 -17.58414 -16.78262 -16.64684 -16.39284 -16.05056 -15.87843 -15.13840 -15.08030 -14.68204 -14.44512 -14.32038 -13.96535 -13.63752 -13.22143 -13.08915 -12.53753 -12.42802 -12.35147 -12.23525 -12.17709 -12.12717 -11.84373 -11.74008 -11.33745 -11.24512 -11.07193 -11.01216 -10.94590 -10.67356 -10.60452 -10.22407 -9.71340 -9.44925 -9.27391 -9.10728 -8.91179 -8.46289 -7.77775 -6.07529 -4.12800 0.22234 0.68870 1.24368 2.36195 2.93191 3.26320 3.29493 3.30375 3.34662 3.38341 3.59103 3.98989 4.31691 4.41959 4.58448 4.68423 4.78021 4.98180 5.14704 5.19451 5.24211 5.27037 5.32065 5.42666 5.45018 5.56016 5.67107 5.69462 5.86122 5.93413 5.94657 6.03976 6.11167 6.40141 6.70574 6.72322 6.73794 6.82642 7.01425 7.39299 7.46912 7.87996 8.18677 8.30346 8.83719 8.99038 9.52376 11.00611 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012985 B = 0.002843 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.770014 B = 9847.588891 C =11286.525340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.171 4.171 3 C 0.135 3.865 4 N -0.592 5.592 5 C 0.248 3.752 6 C -0.529 4.529 7 H 0.056 0.944 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.507 3.493 15 O -0.530 6.530 16 C -0.118 4.118 17 C 0.008 3.992 18 C -0.127 4.127 19 C -0.015 4.015 20 C -0.683 4.683 21 S 2.704 3.296 22 N -1.250 6.250 23 O -0.964 6.964 24 O -0.963 6.963 25 C -0.021 4.021 26 C -0.128 4.128 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.033 0.967 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.419 0.581 40 H 0.416 0.584 41 H 0.140 0.860 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.335 -12.141 -18.605 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.190 4.190 3 C 0.011 3.989 4 N -0.323 5.323 5 C 0.129 3.871 6 C -0.568 4.568 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.293 3.707 15 O -0.406 6.406 16 C -0.158 4.158 17 C 0.008 3.992 18 C -0.145 4.145 19 C -0.034 4.034 20 C -0.772 4.772 21 S 2.793 3.207 22 N -0.923 5.923 23 O -0.954 6.954 24 O -0.953 6.953 25 C -0.040 4.040 26 C -0.147 4.147 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.249 0.751 40 H 0.243 0.757 41 H 0.158 0.842 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.167 -11.952 -16.937 22.666 hybrid contribution -0.685 1.053 -0.543 1.369 sum 8.482 -10.899 -17.480 22.277 Atomic orbital electron populations 1.23836 0.95864 1.01834 1.00261 1.23413 0.96431 0.98944 1.00196 1.20609 0.93199 0.95456 0.89649 1.48233 1.10274 1.60117 1.13720 1.19282 0.95395 0.93780 0.78602 1.21372 1.40813 0.93277 1.01317 0.92533 1.24931 0.94990 0.98803 0.95307 1.69921 1.41783 1.36326 1.05208 0.86562 0.78862 0.84817 0.77196 1.20247 1.21138 1.20143 1.20024 0.82594 0.79092 0.88982 1.90731 1.52369 1.55845 1.41702 1.20984 0.93251 1.02932 0.98595 1.19793 0.94657 0.93318 0.91478 1.21172 0.92226 0.99795 1.01356 1.20854 0.97533 0.93205 0.91831 1.30457 1.23065 1.03807 1.19845 1.01422 0.73176 0.73644 0.72415 1.53182 1.19981 1.79430 1.39740 1.93594 1.68544 1.49067 1.84209 1.93605 1.86307 1.53486 1.61868 1.20868 0.92130 0.98722 0.92328 1.21122 0.96737 0.96113 1.00730 0.88744 0.88235 0.87825 0.89330 0.90774 0.94926 0.93900 0.92607 0.88013 0.87868 0.84924 0.84179 0.75127 0.75710 0.84206 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 14.32 29.01 0.42 -1.74 16 2 C -0.17 -2.20 9.74 -36.03 -0.35 -2.55 16 3 C 0.13 2.00 5.65 -5.20 -0.03 1.97 16 4 N -0.59 -11.83 2.44 -176.44 -0.43 -12.26 16 5 C 0.25 6.36 5.16 -5.19 -0.03 6.33 16 6 C -0.53 -14.75 9.39 -34.44 -0.32 -15.08 16 7 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 10 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.51 9.89 7.66 -10.98 -0.08 9.81 16 15 O -0.53 -13.03 15.61 5.56 0.09 -12.94 16 16 C -0.12 -1.54 4.38 -29.03 -0.13 -1.66 16 17 C 0.01 0.11 4.37 -104.62 -0.46 -0.35 16 18 C -0.13 -1.66 9.70 -39.58 -0.38 -2.04 16 19 C -0.01 -0.18 9.52 -39.58 -0.38 -0.56 16 20 C -0.68 -7.89 5.97 -39.58 -0.24 -8.13 16 21 S 2.70 27.79 6.28 -107.50 -0.68 27.11 16 22 N -1.25 -6.75 9.52 60.35 0.57 -6.18 16 23 O -0.96 -13.01 17.28 -57.17 -0.99 -14.00 16 24 O -0.96 -12.99 17.28 -57.17 -0.99 -13.98 16 25 C -0.02 -0.25 9.52 -39.58 -0.38 -0.62 16 26 C -0.13 -1.60 9.70 -39.58 -0.38 -1.99 16 27 H 0.09 0.97 8.06 -52.49 -0.42 0.54 16 28 H 0.10 1.18 7.84 -52.49 -0.41 0.77 16 29 H 0.10 1.22 7.83 -52.49 -0.41 0.81 16 30 H 0.09 1.40 7.72 -51.93 -0.40 1.00 16 31 H 0.07 0.86 6.44 -51.93 -0.33 0.53 16 32 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.10 1.04 7.72 -51.93 -0.40 0.64 16 36 H 0.10 1.11 7.34 -51.93 -0.38 0.73 16 37 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.14 1.45 7.62 -52.49 -0.40 1.05 16 39 H 0.42 1.55 8.96 -34.48 -0.31 1.24 16 40 H 0.42 1.28 8.96 -34.48 -0.31 0.97 16 41 H 0.14 1.33 7.62 -52.49 -0.40 0.93 16 42 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 376.98 15.07 5.68 5.68 Total: -1.00 -39.26 376.98 -9.24 -48.50 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.38 Total: 2.02 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -2.84 Total: -14.93 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.88 Total: -44.19 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -1.89 Total: -40.92 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 27.79 SS G_CDS: -0.68 Total: 27.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -39.26 -9.24 -48.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553127501.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.953 kcal (2) G-P(sol) polarization free energy of solvation -39.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds