Wall clock time and date at job start Tue Mar 31 2020 21:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 119.99865 * 2 1 4 4 N 1.46490 * 109.47314 * 125.00184 * 3 2 1 5 5 C 1.46497 * 120.00322 * 270.00006 * 4 3 2 6 6 C 1.50707 * 109.47162 * 269.99844 * 5 4 3 7 7 H 1.07998 * 119.99576 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00057 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99930 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99982 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47235 * 59.99855 * 10 8 6 12 12 H 1.48500 * 109.47168 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47142 * 299.99797 * 10 8 6 14 14 C 1.34780 * 120.00111 * 89.99439 * 4 3 2 15 15 O 1.21280 * 120.00423 * 179.97438 * 14 4 3 16 16 C 1.50701 * 119.99795 * 0.02562 * 14 4 3 17 17 C 1.50703 * 109.47064 * 179.97438 * 16 14 4 18 18 C 1.38234 * 119.99770 * 269.72517 * 17 16 14 19 19 C 1.38239 * 119.99901 * 179.76875 * 18 17 16 20 20 C 1.38240 * 119.99645 * 0.50240 * 19 18 17 21 21 S 1.76203 * 119.99680 * 179.72904 * 20 19 18 22 22 N 1.65606 * 107.21600 * 270.02297 * 21 20 19 23 23 O 1.42092 * 106.40524 * 23.56092 * 21 20 19 24 24 O 1.42095 * 106.40222 * 156.48759 * 21 20 19 25 25 C 1.38227 * 120.00205 * 359.74956 * 20 19 18 26 26 C 1.38232 * 119.99860 * 89.99959 * 17 16 14 27 27 H 1.07993 * 120.00154 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.99624 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00094 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.47431 * 4.99991 * 3 2 1 31 31 H 1.09002 * 109.47019 * 245.00223 * 3 2 1 32 32 H 1.09000 * 109.47018 * 29.99405 * 5 4 3 33 33 H 1.09000 * 109.47828 * 149.99700 * 5 4 3 34 34 H 0.97001 * 119.99961 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47060 * 299.99722 * 16 14 4 36 36 H 1.09001 * 109.47380 * 59.99809 * 16 14 4 37 37 H 1.08001 * 120.00330 * 359.97438 * 18 17 16 38 38 H 1.08001 * 119.99843 * 180.23314 * 19 18 17 39 39 H 0.96996 * 120.00167 * 150.00301 * 22 21 20 40 40 H 0.97003 * 120.00162 * 330.00406 * 22 21 20 41 41 H 1.07996 * 120.00251 * 179.97438 * 25 20 19 42 42 H 1.07998 * 120.00407 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1313 5 6 2.5590 1.8650 2.4248 6 6 2.8444 3.3437 2.4803 7 1 3.3041 3.8369 1.6367 8 6 2.5186 4.0668 3.6081 9 7 1.9584 3.4661 4.6353 10 14 2.8717 5.8998 3.6767 11 1 2.1358 6.5869 2.5850 12 1 2.4300 6.4403 4.9874 13 1 4.3295 6.1296 3.5119 14 6 4.2497 0.8662 0.9823 15 8 5.0201 0.8888 1.9187 16 6 4.6972 0.3183 -0.3484 17 6 6.1318 -0.1325 -0.2492 18 6 7.1553 0.7512 -0.5360 19 6 8.4714 0.3391 -0.4404 20 6 8.7636 -0.9598 -0.0682 21 16 10.4409 -1.4871 0.0467 22 7 10.8724 -2.0762 -1.4396 23 8 11.2168 -0.3150 0.2544 24 8 10.4532 -2.5951 0.9364 25 6 7.7399 -1.8450 0.2135 26 6 6.4239 -1.4314 0.1229 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5399 0.9354 0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 1.4889 1.6967 2.5459 33 1 3.0991 1.3604 3.2259 34 1 1.7288 3.9749 5.4286 35 1 4.0680 -0.5285 -0.6228 36 1 4.6125 1.0952 -1.1083 37 1 6.9270 1.7646 -0.8314 38 1 9.2711 1.0306 -0.6608 39 1 11.7933 -2.0134 -1.7376 40 1 10.2042 -2.4842 -2.0124 41 1 7.9682 -2.8598 0.5039 42 1 5.6242 -2.1232 0.3422 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000553127501.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:56 Heat of formation + Delta-G solvation = -93.539417 kcal Electronic energy + Delta-G solvation = -26433.385932 eV Core-core repulsion = 22504.765660 eV Total energy + Delta-G solvation = -3928.620272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16160 -39.87715 -38.26395 -37.22069 -36.94102 -35.19104 -34.13332 -33.97290 -33.65705 -32.06782 -30.28130 -28.48252 -26.85262 -24.99614 -23.92076 -23.05010 -21.14105 -20.54905 -19.93591 -19.30796 -18.65175 -18.32809 -17.88653 -17.65750 -17.28983 -16.93226 -16.49103 -16.20931 -15.93228 -15.78770 -15.47067 -15.19020 -14.58058 -14.50303 -14.36330 -14.16862 -13.78561 -13.43733 -13.25864 -13.21158 -13.11879 -13.10192 -13.07064 -12.95876 -12.80522 -12.58034 -12.25276 -12.21230 -12.10449 -11.88041 -11.69903 -11.29590 -10.79616 -10.65723 -10.30284 -10.14508 -10.03107 -9.47607 -8.23683 -6.38454 -0.61090 -0.25903 0.31409 1.33907 1.35735 1.39564 1.46572 1.81134 2.11267 2.31846 2.38354 2.61275 2.82064 3.06384 3.43968 3.55674 3.79435 3.81662 3.92109 4.11423 4.25406 4.26918 4.32408 4.46094 4.51926 4.58347 4.74291 4.87188 4.96016 4.99635 5.03320 5.07021 5.13119 5.22458 5.29354 5.44927 5.50903 5.73057 5.76125 5.83001 5.96968 6.04999 6.38671 6.68231 6.77017 7.27161 7.46298 8.83313 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012985 B = 0.002843 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.770014 B = 9847.588891 C =11286.525340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.183 4.183 3 C 0.131 3.869 4 N -0.597 5.597 5 C 0.266 3.734 6 C -0.543 4.543 7 H 0.056 0.944 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.965 3.035 11 H -0.258 1.258 12 H -0.280 1.280 13 H -0.279 1.279 14 C 0.499 3.501 15 O -0.592 6.592 16 C -0.100 4.100 17 C -0.013 4.013 18 C -0.141 4.141 19 C -0.027 4.027 20 C -0.684 4.684 21 S 2.733 3.267 22 N -1.228 6.228 23 O -0.997 6.997 24 O -0.996 6.996 25 C -0.029 4.029 26 C -0.138 4.138 27 H 0.115 0.885 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.020 0.980 33 H -0.007 1.007 34 H 0.267 0.733 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.153 0.847 39 H 0.431 0.569 40 H 0.430 0.570 41 H 0.159 0.841 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.393 -12.441 -21.275 26.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.202 4.202 3 C 0.009 3.991 4 N -0.327 5.327 5 C 0.144 3.856 6 C -0.581 4.581 7 H 0.074 0.926 8 C -0.192 4.192 9 N -0.569 5.569 10 Si 0.790 3.210 11 H -0.182 1.182 12 H -0.205 1.205 13 H -0.204 1.204 14 C 0.289 3.711 15 O -0.473 6.473 16 C -0.139 4.139 17 C -0.014 4.014 18 C -0.160 4.160 19 C -0.046 4.046 20 C -0.772 4.772 21 S 2.821 3.179 22 N -0.908 5.908 23 O -0.987 6.987 24 O -0.985 6.985 25 C -0.048 4.048 26 C -0.157 4.157 27 H 0.134 0.866 28 H 0.114 0.886 29 H 0.138 0.862 30 H 0.093 0.907 31 H 0.132 0.868 32 H 0.038 0.962 33 H 0.011 0.989 34 H 0.075 0.925 35 H 0.155 0.845 36 H 0.151 0.849 37 H 0.159 0.841 38 H 0.171 0.829 39 H 0.264 0.736 40 H 0.261 0.739 41 H 0.176 0.824 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.192 -12.267 -19.683 24.948 hybrid contribution -0.707 1.078 0.259 1.315 sum 8.485 -11.189 -19.423 23.968 Atomic orbital electron populations 1.24050 0.95766 1.02743 0.98541 1.23364 0.96714 0.98441 1.01651 1.20887 0.92780 0.96309 0.89154 1.48202 1.11715 1.59757 1.13069 1.18653 0.93723 0.92628 0.80582 1.21697 1.40515 0.94476 1.01422 0.92595 1.25858 0.94697 1.03720 0.94913 1.70049 1.42814 1.38193 1.05825 0.85500 0.78464 0.79134 0.77925 1.18203 1.20535 1.20430 1.21129 0.81463 0.77811 0.90745 1.90696 1.53939 1.58255 1.44435 1.20943 0.93516 1.04741 0.94733 1.19954 0.94889 0.93939 0.92583 1.21417 0.92682 1.00290 1.01627 1.21097 0.97763 0.93783 0.91937 1.30610 1.23602 1.03746 1.19245 1.00378 0.72108 0.72550 0.72867 1.52662 1.21068 1.78747 1.38276 1.93549 1.69303 1.50554 1.85296 1.93572 1.86551 1.54382 1.63965 1.21173 0.91978 0.99707 0.91953 1.21423 0.97649 0.96285 1.00302 0.86650 0.88599 0.86233 0.90723 0.86827 0.96198 0.98858 0.92462 0.84495 0.84930 0.84125 0.82890 0.73640 0.73928 0.82377 0.83502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.79 14.32 67.77 0.97 -2.82 16 2 C -0.18 -4.32 9.74 25.64 0.25 -4.07 16 3 C 0.13 3.67 5.65 85.63 0.48 4.16 16 4 N -0.60 -23.96 2.44 -830.51 -2.03 -25.98 16 5 C 0.27 14.18 5.16 85.64 0.44 14.62 16 6 C -0.54 -31.00 9.39 25.60 0.24 -30.76 16 7 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 8 C 0.01 0.41 5.46 84.65 0.46 0.87 16 9 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 10 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 11 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 14 C 0.50 19.42 7.66 87.66 0.67 20.09 16 15 O -0.59 -30.15 15.61 -3.03 -0.05 -30.19 16 16 C -0.10 -2.38 4.38 29.10 0.13 -2.26 16 17 C -0.01 -0.33 4.37 -19.87 -0.09 -0.42 16 18 C -0.14 -3.56 9.70 22.27 0.22 -3.34 16 19 C -0.03 -0.62 9.52 22.27 0.21 -0.41 16 20 C -0.68 -15.12 5.97 22.27 0.13 -14.98 16 21 S 2.73 53.38 6.28 -56.49 -0.35 53.03 16 22 N -1.23 -10.69 9.52 37.02 0.35 -10.34 16 23 O -1.00 -26.31 17.28 -128.00 -2.21 -28.53 16 24 O -1.00 -26.08 17.28 -128.00 -2.21 -28.29 16 25 C -0.03 -0.64 9.52 22.27 0.21 -0.43 16 26 C -0.14 -3.25 9.70 22.27 0.22 -3.04 16 27 H 0.12 2.04 8.06 -2.91 -0.02 2.02 16 28 H 0.10 2.15 7.84 -2.91 -0.02 2.13 16 29 H 0.12 2.45 7.83 -2.91 -0.02 2.43 16 30 H 0.07 2.30 7.72 -2.38 -0.02 2.28 16 31 H 0.11 2.26 6.44 -2.39 -0.02 2.25 16 32 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 33 H -0.01 -0.42 7.42 -2.39 -0.02 -0.44 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.14 2.29 7.72 -2.39 -0.02 2.27 16 36 H 0.13 2.37 7.34 -2.39 -0.02 2.36 16 37 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 38 H 0.15 3.05 7.62 -2.91 -0.02 3.02 16 39 H 0.43 2.20 8.96 -96.75 -0.87 1.34 16 40 H 0.43 1.54 8.96 -96.74 -0.87 0.68 16 41 H 0.16 2.78 7.62 -2.91 -0.02 2.76 16 42 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -89.10 376.98 -0.31 -89.42 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -0.67 Total: 13.04 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 4.55 Total: -22.78 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -1.39 Total: -92.65 kcal Atomic # 8 Polarization: -82.54 SS G_CDS: -4.47 Total: -87.01 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 53.38 SS G_CDS: -0.35 Total: 53.03 kcal Total: -89.10 -0.31 -89.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553127501.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.123 kcal (2) G-P(sol) polarization free energy of solvation -89.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds