Wall clock time and date at job start Tue Mar 31 2020 21:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47264 * 2 1 4 4 C 1.50696 * 109.47648 * 120.00390 * 2 1 3 5 5 O 1.21280 * 119.99960 * 119.99653 * 4 2 1 6 6 N 1.34775 * 119.99830 * 300.00480 * 4 2 1 7 7 C 1.39475 * 120.00199 * 184.60952 * 6 4 2 8 8 C 1.38594 * 119.58199 * 173.54367 * 7 6 4 9 9 C 1.40814 * 118.79486 * 180.02562 * 8 7 6 10 10 C 1.41536 * 120.99457 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99750 * 201.20939 * 10 9 8 12 12 C 1.40032 * 120.00312 * 21.20313 * 10 9 8 13 13 N 1.30742 * 119.99826 * 13.69886 * 12 10 9 14 14 Si 1.86806 * 120.00238 * 193.69964 * 12 10 9 15 15 H 1.48503 * 109.47044 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47158 * 119.99960 * 14 12 10 17 17 H 1.48498 * 109.46914 * 240.00031 * 14 12 10 18 18 C 1.41169 * 118.00664 * 359.97438 * 9 8 7 19 19 C 1.37592 * 119.01788 * 359.97438 * 18 9 8 20 20 N 1.32079 * 121.10950 * 359.72766 * 19 18 9 21 21 S 1.81400 * 109.47100 * 240.00496 * 2 1 3 22 22 O 1.42103 * 108.57958 * 174.48358 * 21 2 1 23 23 O 1.42099 * 108.57752 * 305.50981 * 21 2 1 24 24 C 1.81402 * 101.92149 * 59.99880 * 21 2 1 25 25 C 1.52997 * 117.49646 * 253.61968 * 24 21 2 26 26 C 1.52993 * 60.00325 * 252.51098 * 25 24 21 27 27 H 1.09000 * 109.47122 * 299.99258 * 1 2 3 28 28 H 1.08998 * 109.47511 * 59.99655 * 1 2 3 29 29 H 1.09008 * 109.47142 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47207 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47138 * 300.00573 * 3 2 1 32 32 H 1.09009 * 109.46689 * 60.00188 * 3 2 1 33 33 H 0.97004 * 119.99999 * 4.60811 * 6 4 2 34 34 H 1.07997 * 120.59766 * 0.02562 * 8 7 6 35 35 H 0.97005 * 119.99854 * 180.02562 * 13 12 10 36 36 H 1.08001 * 120.49251 * 179.97438 * 18 9 8 37 37 H 1.08001 * 119.44335 * 180.02562 * 19 18 9 38 38 H 1.09000 * 115.55200 * 39.33166 * 24 21 2 39 39 H 1.08998 * 117.50269 * 0.02562 * 25 24 21 40 40 H 1.09007 * 117.49600 * 145.02007 * 25 24 21 41 41 H 1.08997 * 117.50103 * 252.51408 * 26 25 24 42 42 H 1.09001 * 117.49711 * 107.48786 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7296 -1.6965 1.1189 6 7 1.7068 -0.2501 2.4545 7 6 2.2489 -0.8487 3.5916 8 6 2.0166 -0.2871 4.8372 9 6 2.5724 -0.9047 5.9741 10 6 2.3651 -0.3706 7.2683 11 1 3.0429 -0.6216 8.0708 12 6 1.2815 0.4832 7.5082 13 7 0.3175 0.5785 6.6302 14 14 1.2133 1.4863 9.0827 15 1 2.4172 1.2007 9.9040 16 1 1.1753 2.9323 8.7471 17 1 -0.0063 1.1235 9.8482 18 6 3.3424 -2.0726 5.7842 19 6 3.5172 -2.5566 4.5082 20 7 2.9738 -1.9506 3.4680 21 16 2.1346 -0.8550 -1.4812 22 8 3.5496 -0.7328 -1.5286 23 8 1.5479 -2.1483 -1.5286 24 6 1.4228 0.1517 -2.8118 25 6 0.2446 -0.4372 -3.5901 26 6 1.6215 -0.3343 -4.2489 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.0953 0.4975 2.5447 34 1 1.4200 0.6080 4.9340 35 1 -0.4330 1.1703 6.7962 36 1 3.7878 -2.5786 6.6280 37 1 4.1047 -3.4498 4.3550 38 1 1.4250 1.2280 -2.6397 39 1 -0.1032 -1.4294 -3.3024 40 1 -0.5288 0.2517 -3.9300 41 1 1.7542 0.4224 -5.0222 42 1 2.1801 -1.2589 -4.3948 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000555850351.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:05 Heat of formation + Delta-G solvation = -62.493518 kcal Electronic energy + Delta-G solvation = -27495.035179 eV Core-core repulsion = 23567.761159 eV Total energy + Delta-G solvation = -3927.274020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.65559 -39.84955 -38.38023 -37.84922 -37.15374 -36.33414 -36.20853 -35.39606 -32.48646 -30.42898 -28.50724 -27.98375 -25.60219 -24.53276 -23.90409 -23.51463 -23.29796 -21.44714 -19.74794 -19.62211 -18.91943 -18.24346 -17.48724 -17.37591 -16.95950 -16.83043 -16.37603 -16.10994 -15.98712 -15.75037 -15.47268 -14.75490 -14.62804 -14.56029 -14.36911 -14.16831 -13.88795 -13.44805 -13.30874 -13.29359 -13.20241 -13.17040 -12.90494 -12.73195 -12.54058 -12.52094 -12.12818 -12.09211 -11.98105 -11.90686 -11.72046 -11.64815 -11.36264 -11.23989 -11.15177 -10.01827 -9.70102 -8.98147 -8.64700 -6.61488 -1.17079 0.60442 0.95266 1.41301 1.45512 1.56025 1.61775 1.65629 1.76363 2.19079 2.23183 2.71242 2.76209 3.02802 3.19899 3.42842 3.59335 3.60267 3.70400 3.82800 3.93996 4.10289 4.46638 4.48794 4.54404 4.60091 4.64058 4.67366 4.72889 4.76534 4.86927 4.92179 5.01431 5.04646 5.09057 5.09535 5.21512 5.42175 5.53008 5.85140 6.01744 6.32619 6.49554 6.73051 6.78927 7.01057 7.75912 8.22942 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.023048 B = 0.002960 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.560472 B = 9455.672080 C =10206.063728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.557 4.557 3 C -0.144 4.144 4 C 0.523 3.477 5 O -0.529 6.529 6 N -0.631 5.631 7 C 0.324 3.676 8 C -0.256 4.256 9 C 0.109 3.891 10 C -0.475 4.475 11 H 0.084 0.916 12 C 0.038 3.962 13 N -0.808 5.808 14 Si 0.991 3.009 15 H -0.260 1.260 16 H -0.259 1.259 17 H -0.265 1.265 18 C -0.295 4.295 19 C 0.110 3.890 20 N -0.588 5.588 21 S 2.450 3.550 22 O -0.976 6.976 23 O -0.969 6.969 24 C -0.657 4.657 25 C -0.114 4.114 26 C -0.132 4.132 27 H 0.098 0.902 28 H 0.133 0.867 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.133 0.867 32 H 0.100 0.900 33 H 0.427 0.573 34 H 0.141 0.859 35 H 0.294 0.706 36 H 0.118 0.882 37 H 0.146 0.854 38 H 0.206 0.794 39 H 0.107 0.893 40 H 0.157 0.843 41 H 0.151 0.849 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.491 10.533 -17.336 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.649 4.649 3 C -0.202 4.202 4 C 0.308 3.692 5 O -0.404 6.404 6 N -0.278 5.278 7 C 0.099 3.901 8 C -0.281 4.281 9 C 0.101 3.899 10 C -0.505 4.505 11 H 0.102 0.898 12 C -0.179 4.179 13 N -0.433 5.433 14 Si 0.812 3.188 15 H -0.184 1.184 16 H -0.184 1.184 17 H -0.190 1.190 18 C -0.319 4.319 19 C -0.043 4.043 20 N -0.308 5.308 21 S 2.635 3.365 22 O -0.973 6.973 23 O -0.966 6.966 24 C -0.770 4.770 25 C -0.152 4.152 26 C -0.171 4.171 27 H 0.117 0.883 28 H 0.151 0.849 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.151 0.849 32 H 0.119 0.881 33 H 0.267 0.733 34 H 0.158 0.842 35 H 0.106 0.894 36 H 0.136 0.864 37 H 0.163 0.837 38 H 0.223 0.777 39 H 0.126 0.874 40 H 0.174 0.826 41 H 0.169 0.831 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.543 8.823 -18.379 21.411 hybrid contribution -0.397 1.047 2.169 2.441 sum -6.940 9.870 -16.210 20.208 Atomic orbital electron populations 1.21976 0.84735 1.04934 1.08263 1.30366 1.10601 1.11487 1.12416 1.22026 1.02124 0.87686 1.08345 1.20227 0.80133 0.83884 0.84948 1.90892 1.37243 1.26013 1.86212 1.43088 1.46568 1.35066 1.03065 1.18479 0.94208 0.91577 0.85845 1.21753 1.11845 1.04990 0.89527 1.18037 0.88533 0.89414 0.93955 1.19927 1.10418 1.24882 0.95284 0.89791 1.26859 0.93177 0.95737 1.02168 1.69756 1.06903 1.30256 1.36381 0.85011 0.79368 0.77954 0.76512 1.18410 1.18375 1.18971 1.22082 1.11506 1.00853 0.97461 1.22172 0.96131 0.97956 0.88066 1.67296 1.17142 1.11688 1.34665 1.07042 0.74976 0.76434 0.78068 1.93486 1.30160 1.87416 1.86277 1.93483 1.79659 1.37241 1.86244 1.31940 1.19268 1.16326 1.09432 1.23234 0.91266 1.03485 0.97193 1.23138 1.00191 1.03796 0.89959 0.88307 0.84880 0.91759 0.91931 0.84891 0.88122 0.73344 0.84198 0.89440 0.86440 0.83653 0.77672 0.87421 0.82558 0.83145 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.14 71.98 0.59 -1.85 16 2 C -0.56 -14.43 0.72 -11.54 -0.01 -14.44 16 3 C -0.14 -2.51 8.15 71.98 0.59 -1.92 16 4 C 0.52 21.26 6.46 87.66 0.57 21.82 16 5 O -0.53 -27.78 13.88 -0.14 0.00 -27.78 16 6 N -0.63 -25.41 5.17 -308.65 -1.60 -27.01 16 7 C 0.32 16.48 7.41 132.75 0.98 17.46 16 8 C -0.26 -13.21 8.66 22.99 0.20 -13.01 16 9 C 0.11 5.86 5.64 -21.12 -0.12 5.74 16 10 C -0.47 -24.32 9.14 23.52 0.22 -24.11 16 11 H 0.08 4.14 7.88 -2.91 -0.02 4.11 16 12 C 0.04 1.76 5.28 85.29 0.45 2.21 16 13 N -0.81 -37.90 10.58 21.84 0.23 -37.67 16 14 Si 0.99 34.79 29.58 68.60 2.03 36.82 16 15 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 16 H -0.26 -8.58 7.11 99.48 0.71 -7.88 16 17 H -0.27 -8.94 7.11 99.48 0.71 -8.23 16 18 C -0.30 -15.10 9.90 22.84 0.23 -14.88 16 19 C 0.11 5.65 11.15 84.50 0.94 6.60 16 20 N -0.59 -32.40 7.86 -193.53 -1.52 -33.92 16 21 S 2.45 72.18 3.40 -56.49 -0.19 71.99 16 22 O -0.98 -37.99 17.76 -125.75 -2.23 -40.22 16 23 O -0.97 -36.12 16.91 -125.75 -2.13 -38.24 16 24 C -0.66 -8.59 4.97 30.59 0.15 -8.44 16 25 C -0.11 -1.04 10.12 30.59 0.31 -0.73 16 26 C -0.13 -1.49 10.30 30.59 0.31 -1.17 16 27 H 0.10 1.44 7.47 -2.39 -0.02 1.42 16 28 H 0.13 0.87 7.30 -2.39 -0.02 0.86 16 29 H 0.06 1.38 8.06 -2.38 -0.02 1.36 16 30 H 0.06 1.38 8.06 -2.39 -0.02 1.36 16 31 H 0.13 0.80 6.34 -2.39 -0.02 0.79 16 32 H 0.10 1.48 7.67 -2.38 -0.02 1.46 16 33 H 0.43 13.30 7.55 -92.71 -0.70 12.60 16 34 H 0.14 6.99 5.87 -2.91 -0.02 6.97 16 35 H 0.29 12.12 8.29 -92.70 -0.77 11.35 16 36 H 0.12 5.46 8.06 -2.91 -0.02 5.44 16 37 H 0.15 6.56 8.06 -2.91 -0.02 6.54 16 38 H 0.21 0.85 6.50 -2.39 -0.02 0.83 16 39 H 0.11 1.35 7.57 -2.39 -0.02 1.33 16 40 H 0.16 0.20 8.14 -2.38 -0.02 0.18 16 41 H 0.15 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -89.07 361.62 0.36 -88.71 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: 0.37 Total: 34.05 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 5.40 Total: -26.71 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -2.89 Total: -98.60 kcal Atomic # 8 Polarization: -101.88 SS G_CDS: -4.36 Total: -106.24 kcal Atomic # 14 Polarization: 34.79 SS G_CDS: 2.03 Total: 36.82 kcal Atomic # 16 Polarization: 72.18 SS G_CDS: -0.19 Total: 71.99 kcal Total: -89.07 0.36 -88.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555850351.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.215 kcal (2) G-P(sol) polarization free energy of solvation -89.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds