Wall clock time and date at job start Tue Mar 31 2020 21:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47631 * 2 1 4 4 C 1.53007 * 109.47226 * 240.00126 * 2 1 3 5 5 O 1.45206 * 109.46929 * 120.00240 * 2 1 3 6 6 C 1.34664 * 116.99957 * 59.99932 * 5 2 1 7 7 O 1.21431 * 120.00396 * 0.02562 * 6 5 2 8 8 C 1.48064 * 120.00101 * 180.02562 * 6 5 2 9 9 C 1.40025 * 120.88733 * 359.97438 * 8 6 5 10 10 C 1.38004 * 119.14647 * 180.02562 * 9 8 6 11 11 N 1.31878 * 120.99733 * 0.02562 * 10 9 8 12 12 C 1.32275 * 121.97018 * 359.67776 * 11 10 9 13 13 N 1.39421 * 119.63217 * 180.29410 * 12 11 10 14 14 C 1.34780 * 120.00275 * 355.21928 * 13 12 11 15 15 O 1.21284 * 119.99685 * 5.08485 * 14 13 12 16 16 C 1.50692 * 120.00391 * 185.07927 * 14 13 12 17 17 S 1.81002 * 109.47266 * 180.02562 * 16 14 13 18 18 C 1.76203 * 100.00119 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99914 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00122 * 179.97438 * 18 17 16 21 21 N 1.31629 * 119.99723 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99947 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47338 * 90.00173 * 22 20 18 24 24 H 1.48502 * 109.46899 * 210.00120 * 22 20 18 25 25 H 1.48499 * 109.46963 * 329.99993 * 22 20 18 26 26 C 1.39012 * 120.73670 * 0.58902 * 12 11 10 27 27 H 1.09004 * 109.47015 * 300.00022 * 1 2 3 28 28 H 1.09006 * 109.46976 * 59.99392 * 1 2 3 29 29 H 1.08994 * 109.47685 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47396 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47168 * 300.00330 * 3 2 1 32 32 H 1.09004 * 109.46939 * 59.99931 * 3 2 1 33 33 H 1.08996 * 109.46731 * 300.00068 * 4 2 1 34 34 H 1.08998 * 109.46881 * 60.00094 * 4 2 1 35 35 H 1.09004 * 109.46872 * 180.02562 * 4 2 1 36 36 H 1.07996 * 120.42618 * 359.97438 * 9 8 6 37 37 H 1.07996 * 119.49971 * 179.97438 * 10 9 8 38 38 H 0.96999 * 120.00489 * 175.21868 * 13 12 11 39 39 H 1.09001 * 109.47620 * 300.00444 * 16 14 13 40 40 H 1.09002 * 109.47081 * 60.00291 * 16 14 13 41 41 H 0.97000 * 119.99953 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.54047 * 179.73330 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0139 -0.6846 1.1856 6 6 1.6520 -1.9726 1.3383 7 8 0.9519 -2.5097 0.5041 8 6 2.1078 -2.7342 2.5235 9 6 2.9160 -2.1336 3.4966 10 6 3.3206 -2.8771 4.5866 11 7 2.9579 -4.1378 4.7212 12 6 2.1910 -4.7449 3.8307 13 7 1.8319 -6.0780 4.0247 14 6 2.3430 -6.7694 5.0627 15 8 3.0417 -6.2082 5.8799 16 6 2.0463 -8.2397 5.2079 17 16 2.8681 -8.8777 6.6890 18 6 2.3667 -10.5652 6.6143 19 1 1.7352 -10.9056 5.8070 20 6 2.7842 -11.4572 7.5923 21 7 3.5551 -11.0425 8.5754 22 14 2.2531 -13.2464 7.5127 23 1 3.2477 -14.0236 6.7306 24 1 2.1648 -13.7982 8.8886 25 1 0.9246 -13.3396 6.8558 26 6 1.7440 -4.0702 2.7004 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 3.2195 -1.1022 3.3950 37 1 3.9444 -2.4197 5.3403 38 1 1.2142 -6.5080 3.4128 39 1 0.9699 -8.3860 5.2986 40 1 2.4127 -8.7727 4.3305 41 1 3.8466 -11.6658 9.2591 42 1 1.1214 -4.5702 1.9732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598911837.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:24 Heat of formation + Delta-G solvation = -71.388812 kcal Electronic energy + Delta-G solvation = -25561.333887 eV Core-core repulsion = 21633.674138 eV Total energy + Delta-G solvation = -3927.659749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.41050 -40.58278 -38.78607 -37.35163 -34.93592 -34.47438 -32.76870 -32.45512 -30.83076 -28.75056 -27.86669 -27.84425 -25.85870 -25.51802 -23.46434 -22.67184 -20.73588 -19.89962 -18.68724 -17.87638 -17.21913 -16.73258 -16.59336 -16.40988 -16.02818 -15.46090 -15.27794 -14.91810 -14.82289 -14.77603 -14.11201 -14.05748 -14.00402 -13.94092 -13.34459 -12.95253 -12.67892 -12.64741 -12.48601 -12.36732 -12.27218 -12.18999 -11.92689 -11.70584 -11.08392 -11.05425 -10.84307 -10.79979 -10.77764 -10.55743 -10.14078 -10.04861 -9.85998 -9.09044 -9.04248 -8.41889 -8.28974 -6.54145 -6.24257 -3.95614 0.33588 0.88024 2.08548 2.26012 2.73611 2.96623 3.21239 3.22839 3.28787 3.49339 3.73416 4.06318 4.16872 4.23444 4.28943 4.29589 4.43294 4.65652 4.69460 4.78333 5.02700 5.08344 5.11156 5.12342 5.18972 5.24013 5.32081 5.37421 5.37666 5.50119 5.54775 5.60054 5.74645 5.79143 5.79936 5.82606 6.03443 6.05217 6.07099 6.57477 7.14938 7.37381 7.57268 7.92194 8.32514 8.45682 9.21107 10.83135 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.035893 B = 0.001826 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.915752 B =15333.856687 C =15907.019021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.117 3.883 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.342 6.342 6 C 0.517 3.483 7 O -0.494 6.494 8 C -0.054 4.054 9 C -0.162 4.162 10 C 0.133 3.867 11 N -0.452 5.452 12 C 0.371 3.629 13 N -0.665 5.665 14 C 0.520 3.480 15 O -0.444 6.444 16 C -0.153 4.153 17 S -0.055 6.055 18 C -0.537 4.537 19 H 0.074 0.926 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.920 3.080 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.153 4.153 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.148 0.852 37 H 0.169 0.831 38 H 0.418 0.582 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.269 0.731 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.899 24.173 -19.014 31.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.082 3.918 3 C -0.198 4.198 4 C -0.242 4.242 5 O -0.259 6.259 6 C 0.361 3.639 7 O -0.382 6.382 8 C -0.064 4.064 9 C -0.184 4.184 10 C -0.026 4.026 11 N -0.168 5.168 12 C 0.139 3.861 13 N -0.313 5.313 14 C 0.305 3.695 15 O -0.310 6.310 16 C -0.304 4.304 17 S 0.172 5.828 18 C -0.685 4.685 19 H 0.092 0.908 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.746 3.254 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.177 4.177 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.166 0.834 37 H 0.186 0.814 38 H 0.255 0.745 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.079 0.921 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.558 24.336 -16.979 29.886 hybrid contribution -1.816 -1.536 -2.192 3.234 sum -5.374 22.800 -19.171 30.270 Atomic orbital electron populations 1.22506 0.93822 1.04863 1.02956 1.22258 0.94558 0.92319 0.82700 1.21860 1.02389 0.92304 1.03244 1.22509 1.01884 1.03177 0.96590 1.86584 1.69592 1.24376 1.45356 1.20937 0.77232 0.80581 0.85112 1.90750 1.34832 1.70073 1.42526 1.19135 1.00088 0.93241 0.93896 1.22341 0.98979 1.02187 0.94877 1.22804 0.95648 0.88310 0.95804 1.67649 1.10897 1.10724 1.27498 1.18398 0.92076 0.86049 0.89615 1.43909 1.47724 1.08423 1.31205 1.20651 0.79863 0.88841 0.80158 1.90817 1.32620 1.69460 1.38100 1.23566 1.05991 0.92897 1.07946 1.85447 1.65025 1.07937 1.24430 1.22860 1.37215 0.94131 1.14327 0.90815 1.24995 0.94648 0.99426 0.94477 1.70013 1.32551 1.35611 1.12010 0.86154 0.78991 0.82647 0.77632 1.20253 1.20727 1.19679 1.21511 1.03752 0.93919 0.98563 0.91809 0.90852 0.89768 0.91290 0.90175 0.91301 0.89764 0.90847 0.91802 0.83401 0.81437 0.74539 0.88814 0.88774 0.92122 0.83285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 8.37 37.15 0.31 -0.99 16 2 C 0.12 0.85 1.13 -90.62 -0.10 0.75 16 3 C -0.14 -0.68 8.85 37.16 0.33 -0.35 16 4 C -0.18 -1.31 8.37 37.16 0.31 -1.00 16 5 O -0.34 -3.11 9.24 -40.39 -0.37 -3.48 16 6 C 0.52 5.43 7.23 34.76 0.25 5.68 16 7 O -0.49 -5.81 11.98 -19.21 -0.23 -6.04 16 8 C -0.05 -0.58 5.91 -104.69 -0.62 -1.20 16 9 C -0.16 -1.56 9.70 -39.00 -0.38 -1.94 16 10 C 0.13 1.53 11.16 -17.62 -0.20 1.33 16 11 N -0.45 -7.09 7.85 -12.42 -0.10 -7.19 16 12 C 0.37 5.18 7.42 -154.76 -1.15 4.03 16 13 N -0.66 -9.20 5.39 -11.44 -0.06 -9.26 16 14 C 0.52 9.64 7.81 -10.99 -0.09 9.55 16 15 O -0.44 -10.05 14.12 5.55 0.08 -9.97 16 16 C -0.15 -2.99 6.16 36.00 0.22 -2.76 16 17 S -0.05 -1.46 20.57 -107.50 -2.21 -3.67 16 18 C -0.54 -15.08 9.50 30.94 0.29 -14.78 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 22 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 C -0.15 -1.73 9.51 -38.79 -0.37 -2.10 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.76 5.88 -51.93 -0.31 0.46 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.77 5.88 -51.93 -0.31 0.46 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.15 1.04 7.71 -52.49 -0.40 0.64 16 37 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.42 4.05 8.70 -40.82 -0.36 3.70 16 39 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 40 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 42 H 0.15 1.41 7.74 -52.49 -0.41 1.01 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -35.88 373.23 -8.39 -44.27 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.55 Total: 0.49 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.28 Total: -1.77 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.57 Total: -41.64 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.52 Total: -19.49 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.88 -8.39 -44.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598911837.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.123 kcal (2) G-P(sol) polarization free energy of solvation -35.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds