Wall clock time and date at job start Tue Mar 31 2020 21:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47631 * 2 1 4 4 C 1.53007 * 109.47226 * 240.00126 * 2 1 3 5 5 O 1.45206 * 109.46929 * 120.00240 * 2 1 3 6 6 C 1.34664 * 116.99957 * 59.99932 * 5 2 1 7 7 O 1.21431 * 120.00396 * 0.02562 * 6 5 2 8 8 C 1.48064 * 120.00101 * 180.02562 * 6 5 2 9 9 C 1.40025 * 120.88733 * 359.97438 * 8 6 5 10 10 C 1.38004 * 119.14647 * 180.02562 * 9 8 6 11 11 N 1.31878 * 120.99733 * 0.02562 * 10 9 8 12 12 C 1.32275 * 121.97018 * 359.67776 * 11 10 9 13 13 N 1.39421 * 119.63217 * 180.29410 * 12 11 10 14 14 C 1.34780 * 120.00275 * 355.21928 * 13 12 11 15 15 O 1.21284 * 119.99685 * 5.08485 * 14 13 12 16 16 C 1.50692 * 120.00391 * 185.07927 * 14 13 12 17 17 S 1.81002 * 109.47266 * 180.02562 * 16 14 13 18 18 C 1.76203 * 100.00119 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99914 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00122 * 179.97438 * 18 17 16 21 21 N 1.31629 * 119.99723 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99947 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47338 * 90.00173 * 22 20 18 24 24 H 1.48502 * 109.46899 * 210.00120 * 22 20 18 25 25 H 1.48499 * 109.46963 * 329.99993 * 22 20 18 26 26 C 1.39012 * 120.73670 * 0.58902 * 12 11 10 27 27 H 1.09004 * 109.47015 * 300.00022 * 1 2 3 28 28 H 1.09006 * 109.46976 * 59.99392 * 1 2 3 29 29 H 1.08994 * 109.47685 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47396 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47168 * 300.00330 * 3 2 1 32 32 H 1.09004 * 109.46939 * 59.99931 * 3 2 1 33 33 H 1.08996 * 109.46731 * 300.00068 * 4 2 1 34 34 H 1.08998 * 109.46881 * 60.00094 * 4 2 1 35 35 H 1.09004 * 109.46872 * 180.02562 * 4 2 1 36 36 H 1.07996 * 120.42618 * 359.97438 * 9 8 6 37 37 H 1.07996 * 119.49971 * 179.97438 * 10 9 8 38 38 H 0.96999 * 120.00489 * 175.21868 * 13 12 11 39 39 H 1.09001 * 109.47620 * 300.00444 * 16 14 13 40 40 H 1.09002 * 109.47081 * 60.00291 * 16 14 13 41 41 H 0.97000 * 119.99953 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.54047 * 179.73330 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0139 -0.6846 1.1856 6 6 1.6520 -1.9726 1.3383 7 8 0.9519 -2.5097 0.5041 8 6 2.1078 -2.7342 2.5235 9 6 2.9160 -2.1336 3.4966 10 6 3.3206 -2.8771 4.5866 11 7 2.9579 -4.1378 4.7212 12 6 2.1910 -4.7449 3.8307 13 7 1.8319 -6.0780 4.0247 14 6 2.3430 -6.7694 5.0627 15 8 3.0417 -6.2082 5.8799 16 6 2.0463 -8.2397 5.2079 17 16 2.8681 -8.8777 6.6890 18 6 2.3667 -10.5652 6.6143 19 1 1.7352 -10.9056 5.8070 20 6 2.7842 -11.4572 7.5923 21 7 3.5551 -11.0425 8.5754 22 14 2.2531 -13.2464 7.5127 23 1 3.2477 -14.0236 6.7306 24 1 2.1648 -13.7982 8.8886 25 1 0.9246 -13.3396 6.8558 26 6 1.7440 -4.0702 2.7004 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 3.2195 -1.1022 3.3950 37 1 3.9444 -2.4197 5.3403 38 1 1.2142 -6.5080 3.4128 39 1 0.9699 -8.3860 5.2986 40 1 2.4127 -8.7727 4.3305 41 1 3.8466 -11.6658 9.2591 42 1 1.1214 -4.5702 1.9732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598911837.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:24 Heat of formation + Delta-G solvation = -93.881139 kcal Electronic energy + Delta-G solvation = -25562.309228 eV Core-core repulsion = 21633.674138 eV Total energy + Delta-G solvation = -3928.635090 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.25881 -41.56417 -40.02166 -38.09781 -36.11203 -35.17302 -34.58209 -33.66764 -32.05686 -30.07499 -28.37903 -28.29113 -27.67041 -26.73105 -24.44366 -23.59142 -21.77315 -20.78587 -19.97336 -19.42063 -18.20836 -17.83475 -17.58030 -17.16200 -16.87684 -16.82795 -16.74867 -16.41985 -16.07666 -15.54955 -15.41512 -15.06122 -14.91358 -14.83546 -14.58647 -14.48879 -13.64583 -13.40164 -13.20129 -13.16040 -13.15594 -12.92913 -12.89223 -12.87945 -12.62222 -12.54296 -12.30279 -11.94744 -11.74869 -11.44033 -11.41404 -11.20277 -11.14057 -11.08712 -10.29895 -10.20898 -9.44072 -8.66842 -8.34549 -6.12669 -0.53769 -0.06221 1.15769 1.36071 1.37122 1.43063 1.47842 1.56671 1.65568 1.99076 2.26815 2.77003 2.99938 3.15709 3.32614 3.43402 3.70544 3.73697 3.78361 3.83164 3.90366 3.94375 4.15349 4.27383 4.46709 4.48306 4.56036 4.61125 4.61293 4.76920 4.81467 4.86150 4.89140 4.95579 5.10286 5.14303 5.26115 5.26305 5.41881 5.42706 5.57275 6.07033 6.20293 6.60754 6.85183 7.06981 7.22128 8.74608 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.035893 B = 0.001826 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.915752 B =15333.856687 C =15907.019021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.108 3.892 3 C -0.137 4.137 4 C -0.183 4.183 5 O -0.342 6.342 6 C 0.521 3.479 7 O -0.509 6.509 8 C -0.064 4.064 9 C -0.135 4.135 10 C 0.121 3.879 11 N -0.499 5.499 12 C 0.345 3.655 13 N -0.647 5.647 14 C 0.526 3.474 15 O -0.494 6.494 16 C -0.128 4.128 17 S -0.146 6.146 18 C -0.547 4.547 19 H 0.085 0.915 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.258 1.258 26 C -0.139 4.139 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.179 0.821 37 H 0.189 0.811 38 H 0.437 0.563 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.271 0.729 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.006 25.317 -21.394 33.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.072 3.928 3 C -0.194 4.194 4 C -0.240 4.240 5 O -0.259 6.259 6 C 0.365 3.635 7 O -0.398 6.398 8 C -0.073 4.073 9 C -0.156 4.156 10 C -0.037 4.037 11 N -0.215 5.215 12 C 0.114 3.886 13 N -0.297 5.297 14 C 0.311 3.689 15 O -0.364 6.364 16 C -0.280 4.280 17 S 0.081 5.919 18 C -0.694 4.694 19 H 0.103 0.897 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.181 1.181 26 C -0.163 4.163 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.196 0.804 37 H 0.206 0.794 38 H 0.277 0.723 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.080 0.920 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.693 25.518 -19.419 32.408 hybrid contribution -1.489 -1.649 -1.597 2.736 sum -6.182 23.869 -21.016 32.398 Atomic orbital electron populations 1.22487 0.93754 1.03668 1.04041 1.22591 0.94788 0.93408 0.81977 1.21890 1.02576 0.90540 1.04390 1.22491 1.01953 1.02066 0.97462 1.86576 1.69433 1.23524 1.46347 1.20834 0.76944 0.81034 0.84679 1.90758 1.35520 1.70525 1.42991 1.19321 1.00315 0.93233 0.94440 1.22621 0.96739 1.03095 0.93157 1.23200 0.96028 0.87370 0.97058 1.67534 1.12084 1.12764 1.29129 1.18480 0.93500 0.85945 0.90693 1.43460 1.47422 1.08623 1.30156 1.20395 0.79422 0.88442 0.80617 1.90801 1.35128 1.70202 1.40261 1.23381 1.06322 0.93700 1.04550 1.85624 1.67225 1.09136 1.29886 1.23215 1.37194 0.94302 1.14729 0.89687 1.26122 0.94468 1.04663 0.93883 1.70181 1.34076 1.37451 1.13032 0.84952 0.79134 0.76047 0.77840 1.19370 1.20377 1.18145 1.21573 1.02989 0.94114 0.97615 0.91597 0.88947 0.92013 0.91023 0.88216 0.90997 0.92023 0.88936 0.91640 0.80357 0.79446 0.72259 0.86503 0.86585 0.91996 0.81594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 8.37 71.98 0.60 -1.62 16 2 C 0.11 1.32 1.13 -10.79 -0.01 1.31 16 3 C -0.14 -0.93 8.85 71.98 0.64 -0.29 16 4 C -0.18 -2.25 8.37 71.98 0.60 -1.65 16 5 O -0.34 -5.50 9.24 -55.73 -0.51 -6.01 16 6 C 0.52 10.09 7.23 70.43 0.51 10.60 16 7 O -0.51 -11.42 11.98 20.06 0.24 -11.18 16 8 C -0.06 -1.26 5.91 -19.91 -0.12 -1.38 16 9 C -0.14 -2.32 9.70 22.65 0.22 -2.10 16 10 C 0.12 2.69 11.16 84.63 0.94 3.63 16 11 N -0.50 -15.73 7.85 -193.19 -1.52 -17.25 16 12 C 0.34 9.48 7.42 132.93 0.99 10.46 16 13 N -0.65 -17.48 5.39 -308.51 -1.66 -19.15 16 14 C 0.53 19.64 7.81 87.65 0.68 20.33 16 15 O -0.49 -23.15 14.12 -3.04 -0.04 -23.19 16 16 C -0.13 -4.95 6.16 71.23 0.44 -4.52 16 17 S -0.15 -8.01 20.57 -56.49 -1.16 -9.18 16 18 C -0.55 -30.89 9.50 67.95 0.65 -30.24 16 19 H 0.09 4.43 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.76 5.49 84.86 0.47 1.23 16 21 N -0.91 -55.83 13.22 21.65 0.29 -55.54 16 22 Si 1.00 43.40 29.55 68.60 2.03 45.42 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 25 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 26 C -0.14 -2.97 9.51 22.78 0.22 -2.75 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.06 1.06 5.88 -2.39 -0.01 1.04 16 30 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 1.06 5.88 -2.39 -0.01 1.05 16 34 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.18 1.93 7.71 -2.91 -0.02 1.91 16 37 H 0.19 3.15 8.06 -2.91 -0.02 3.12 16 38 H 0.44 7.80 8.70 -92.71 -0.81 6.99 16 39 H 0.12 3.96 8.14 -2.40 -0.02 3.94 16 40 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 41 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 42 H 0.17 2.86 7.74 -2.91 -0.02 2.84 16 Total: -1.00 -81.17 373.23 4.73 -76.44 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.25 Total: 16.61 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 6.82 Total: 3.02 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -2.89 Total: -91.94 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -0.32 Total: -40.39 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.18 kcal Total: -81.17 4.73 -76.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598911837.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.437 kcal (2) G-P(sol) polarization free energy of solvation -81.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds