Wall clock time and date at job start Tue Mar 31 2020 21:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46980 * 2 1 4 4 H 1.08998 * 109.66602 * 54.70874 * 3 2 1 5 5 C 1.50441 * 109.56671 * 175.00503 * 3 2 1 6 6 O 1.21278 * 118.48588 * 287.13709 * 5 3 2 7 7 N 1.33382 * 123.02586 * 107.11372 * 5 3 2 8 8 C 1.45642 * 124.58683 * 4.58137 * 7 5 3 9 9 C 1.53185 * 110.66697 * 337.67102 * 8 7 5 10 10 N 1.47048 * 109.56949 * 294.41045 * 3 2 1 11 11 S 1.65593 * 121.35562 * 102.89314 * 10 3 2 12 12 O 1.42097 * 106.40695 * 211.54017 * 11 10 3 13 13 O 1.42097 * 106.40329 * 344.45962 * 11 10 3 14 14 C 1.76197 * 107.21892 * 97.99809 * 11 10 3 15 15 C 1.37645 * 120.13114 * 115.23028 * 14 11 10 16 16 C 1.38612 * 120.24914 * 180.02562 * 15 14 11 17 17 C 1.38659 * 120.50220 * 359.97438 * 16 15 14 18 18 C 1.37592 * 120.24614 * 0.02562 * 17 16 15 19 19 C 1.40704 * 120.12867 * 294.95463 * 14 11 10 20 20 C 1.41400 * 120.24069 * 359.97438 * 19 14 11 21 21 H 1.07999 * 119.99601 * 328.78358 * 20 19 14 22 22 C 1.39942 * 119.99822 * 148.78201 * 20 19 14 23 23 N 1.30823 * 120.00132 * 349.67400 * 22 20 19 24 24 Si 1.86801 * 119.99918 * 169.66300 * 22 20 19 25 25 H 1.48506 * 109.46543 * 60.00449 * 24 22 20 26 26 H 1.48494 * 109.47129 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47323 * 300.00735 * 24 22 20 28 28 H 1.08994 * 109.47485 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47065 * 299.99624 * 1 2 3 30 30 H 1.09002 * 109.47482 * 59.99779 * 1 2 3 31 31 H 1.09004 * 109.46596 * 240.00495 * 2 1 3 32 32 H 1.08994 * 109.47658 * 120.00491 * 2 1 3 33 33 H 0.96999 * 117.70625 * 184.29863 * 7 5 3 34 34 H 1.08996 * 109.21933 * 98.16649 * 8 7 5 35 35 H 1.09002 * 109.21895 * 217.50491 * 8 7 5 36 36 H 1.08998 * 109.91018 * 287.35058 * 9 8 7 37 37 H 1.08998 * 109.68567 * 166.63992 * 9 8 7 38 38 H 1.07995 * 119.86874 * 0.02562 * 15 14 11 39 39 H 1.07997 * 119.74601 * 179.97438 * 16 15 14 40 40 H 1.08001 * 119.87521 * 179.97438 * 17 16 15 41 41 H 1.08005 * 120.12159 * 179.97438 * 18 17 16 42 42 H 0.97006 * 120.00049 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6031 1.9860 0.8378 5 6 3.5393 1.4469 0.1234 6 8 4.0323 1.1642 1.1948 7 7 4.3514 1.7469 -0.8913 8 6 3.9047 2.1958 -2.2028 9 6 2.4569 1.7651 -2.4575 10 7 1.6643 2.0978 -1.2617 11 16 0.4010 3.1658 -1.3351 12 8 -0.1584 3.0372 -2.6350 13 8 -0.3510 2.9805 -0.1437 14 6 1.0834 4.7878 -1.2453 15 6 0.9678 5.6462 -2.3151 16 6 1.5042 6.9226 -2.2474 17 6 2.1618 7.3498 -1.1038 18 6 2.2892 6.5087 -0.0224 19 6 1.7435 5.2127 -0.0777 20 6 1.8628 4.3418 1.0299 21 1 1.0937 3.6094 1.2262 22 6 2.9773 4.4290 1.8717 23 7 4.0005 5.1680 1.5279 24 14 3.0038 3.4902 3.4865 25 1 2.8715 2.0360 3.2157 26 1 4.2866 3.7488 4.1883 27 1 1.8742 3.9397 4.3391 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.3066 1.6640 -0.7441 34 1 3.9732 3.2825 -2.2526 35 1 4.5468 1.7611 -2.9688 36 1 2.4156 0.6911 -2.6390 37 1 2.0614 2.2994 -3.3212 38 1 0.4573 5.3240 -3.2106 39 1 1.4092 7.5892 -3.0917 40 1 2.5762 8.3463 -1.0622 41 1 2.8021 6.8435 0.8671 42 1 4.7733 5.2282 2.1112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601340027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:45 Heat of formation + Delta-G solvation = -85.892591 kcal Electronic energy + Delta-G solvation = -30163.099738 eV Core-core repulsion = 26234.811058 eV Total energy + Delta-G solvation = -3928.288680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.95594 -37.64830 -36.54531 -36.51237 -35.08741 -34.58314 -33.88857 -31.91242 -30.27669 -29.61647 -28.99439 -26.24901 -25.55476 -23.39628 -21.87777 -21.71637 -21.18229 -19.15717 -18.23589 -17.73055 -17.43025 -16.74476 -16.21357 -16.07458 -15.44502 -15.23799 -14.70337 -14.40196 -14.22324 -13.92382 -13.85918 -13.41206 -13.17934 -12.80911 -12.71913 -12.39225 -12.20410 -12.04727 -11.89412 -11.64104 -11.54036 -11.32932 -11.24670 -11.19281 -11.08687 -11.04057 -10.91198 -10.61602 -10.58311 -10.46788 -9.93396 -9.64567 -9.38377 -9.21238 -8.73742 -8.48017 -8.08312 -7.63232 -7.04126 -4.83664 1.31504 2.28643 2.74327 3.01350 3.09325 3.18465 3.27254 3.47308 3.78335 3.89718 4.39453 4.59350 4.75867 4.95080 5.05510 5.21209 5.27094 5.31928 5.38986 5.50476 5.63200 5.68849 5.80718 5.96713 5.99700 6.07185 6.12568 6.17684 6.20865 6.33701 6.41820 6.56563 6.69721 6.84015 6.92854 7.05239 7.16590 7.27864 7.44698 7.63591 7.69295 7.74863 7.88343 8.28407 8.49801 8.60279 8.62786 9.87588 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009910 B = 0.009038 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.731137 B = 3097.206815 C = 4314.715223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.143 3.857 4 H 0.143 0.857 5 C 0.534 3.466 6 O -0.550 6.550 7 N -0.711 5.711 8 C 0.097 3.903 9 C 0.111 3.889 10 N -0.992 5.992 11 S 2.703 3.297 12 O -0.992 6.992 13 O -0.965 6.965 14 C -0.780 4.780 15 C -0.005 4.005 16 C -0.247 4.247 17 C -0.078 4.078 18 C -0.153 4.153 19 C 0.196 3.804 20 C -0.480 4.480 21 H 0.111 0.889 22 C 0.090 3.910 23 N -0.774 5.774 24 Si 0.891 3.109 25 H -0.230 1.230 26 H -0.277 1.277 27 H -0.264 1.264 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.394 0.606 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.122 0.878 42 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.526 -6.585 -5.376 8.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.034 3.966 4 H 0.160 0.840 5 C 0.320 3.680 6 O -0.428 6.428 7 N -0.362 5.362 8 C -0.029 4.029 9 C -0.015 4.015 10 N -0.827 5.827 11 S 2.803 3.197 12 O -0.983 6.983 13 O -0.955 6.955 14 C -0.875 4.875 15 C -0.025 4.025 16 C -0.267 4.267 17 C -0.097 4.097 18 C -0.173 4.173 19 C 0.192 3.808 20 C -0.508 4.508 21 H 0.129 0.871 22 C -0.132 4.132 23 N -0.396 5.396 24 Si 0.714 3.286 25 H -0.153 1.153 26 H -0.202 1.202 27 H -0.189 1.189 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.229 0.771 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.140 0.860 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.866 -6.924 -4.871 8.509 hybrid contribution 1.316 0.589 0.596 1.561 sum 2.182 -6.335 -4.274 7.947 Atomic orbital electron populations 1.21773 0.94521 1.01416 1.02972 1.21811 0.97225 0.94745 1.02855 1.21400 0.91339 0.95379 0.88450 0.84020 1.20050 0.89671 0.75177 0.83142 1.90726 1.76318 1.49857 1.25866 1.45120 1.09901 1.68395 1.12789 1.21748 0.95959 1.00948 0.84221 1.21655 0.90060 1.01734 0.88098 1.58054 1.51674 1.59384 1.13629 1.01112 0.72481 0.73600 0.72493 1.93447 1.76162 1.87406 1.41252 1.93489 1.68020 1.86341 1.47691 1.29820 1.33110 1.21412 1.03184 1.20221 0.93915 0.93393 0.94945 1.20490 1.09701 0.97364 0.99153 1.20910 0.96886 0.97788 0.94072 1.21508 1.03597 0.93690 0.98520 1.16966 0.84146 0.91157 0.88564 1.20391 1.05540 1.17026 1.07818 0.87108 1.25887 0.94209 0.94035 0.99112 1.69743 1.04057 1.29885 1.35920 0.86539 0.78437 0.83276 0.80383 1.15301 1.20217 1.18876 0.92464 0.90939 0.93536 0.91575 0.90057 0.77137 0.90650 0.90240 0.90473 0.87786 0.87521 0.88712 0.88853 0.85976 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.82 37.16 0.33 -1.89 16 2 C -0.13 -1.90 5.50 -26.73 -0.15 -2.05 16 3 C 0.14 2.61 1.63 -68.91 -0.11 2.49 16 4 H 0.14 2.95 4.65 -51.93 -0.24 2.71 16 5 C 0.53 9.90 7.10 -11.73 -0.08 9.82 16 6 O -0.55 -11.69 16.12 5.56 0.09 -11.60 16 7 N -0.71 -10.96 5.42 -61.22 -0.33 -11.29 16 8 C 0.10 1.27 7.34 -4.41 -0.03 1.24 16 9 C 0.11 1.51 6.38 -3.52 -0.02 1.49 16 10 N -0.99 -17.47 2.47 -107.60 -0.27 -17.73 16 11 S 2.70 56.39 4.28 -107.50 -0.46 55.92 16 12 O -0.99 -21.11 15.94 -57.18 -0.91 -22.02 16 13 O -0.96 -21.89 13.31 -57.18 -0.76 -22.65 16 14 C -0.78 -17.84 5.96 -38.87 -0.23 -18.07 16 15 C 0.00 -0.10 9.54 -39.66 -0.38 -0.48 16 16 C -0.25 -5.18 10.05 -39.29 -0.39 -5.58 16 17 C -0.08 -1.69 10.02 -39.66 -0.40 -2.09 16 18 C -0.15 -3.69 8.64 -38.88 -0.34 -4.03 16 19 C 0.20 4.82 5.52 -106.82 -0.59 4.23 16 20 C -0.48 -11.71 6.58 -37.74 -0.25 -11.95 16 21 H 0.11 2.72 3.91 -52.49 -0.21 2.51 16 22 C 0.09 2.13 5.25 -17.34 -0.09 2.04 16 23 N -0.77 -18.41 10.97 55.55 0.61 -17.80 16 24 Si 0.89 19.15 28.73 -169.99 -4.88 14.27 16 25 H -0.23 -5.02 6.31 56.52 0.36 -4.66 16 26 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.26 -5.60 7.11 56.52 0.40 -5.19 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.15 8.04 -51.92 -0.42 0.73 16 30 H 0.05 0.73 6.75 -51.93 -0.35 0.38 16 31 H 0.07 0.85 7.34 -51.93 -0.38 0.47 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.39 5.49 8.80 -40.82 -0.36 5.13 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.86 7.39 -51.93 -0.38 0.47 16 37 H 0.10 1.34 7.29 -51.93 -0.38 0.96 16 38 H 0.11 2.12 7.32 -52.49 -0.38 1.73 16 39 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.12 3.01 6.38 -52.48 -0.33 2.67 16 42 H 0.29 6.42 8.30 -40.82 -0.34 6.08 16 LS Contribution 340.94 15.07 5.14 5.14 Total: -1.00 -29.72 340.94 -9.67 -39.38 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -5.15 Total: 13.20 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -2.74 Total: -24.84 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.01 Total: -46.82 kcal Atomic # 8 Polarization: -54.68 SS G_CDS: -1.58 Total: -56.27 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.88 Total: 14.27 kcal Atomic # 16 Polarization: 56.39 SS G_CDS: -0.46 Total: 55.92 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.72 -9.67 -39.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601340027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.509 kcal (2) G-P(sol) polarization free energy of solvation -29.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds