Wall clock time and date at job start Tue Mar 31 2020 21:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46980 * 2 1 4 4 H 1.08998 * 109.66602 * 54.70874 * 3 2 1 5 5 C 1.50441 * 109.56671 * 175.00503 * 3 2 1 6 6 O 1.21278 * 118.48588 * 287.13709 * 5 3 2 7 7 N 1.33382 * 123.02586 * 107.11372 * 5 3 2 8 8 C 1.45642 * 124.58683 * 4.58137 * 7 5 3 9 9 C 1.53185 * 110.66697 * 337.67102 * 8 7 5 10 10 N 1.47048 * 109.56949 * 294.41045 * 3 2 1 11 11 S 1.65593 * 121.35562 * 102.89314 * 10 3 2 12 12 O 1.42097 * 106.40695 * 211.54017 * 11 10 3 13 13 O 1.42097 * 106.40329 * 344.45962 * 11 10 3 14 14 C 1.76197 * 107.21892 * 97.99809 * 11 10 3 15 15 C 1.37645 * 120.13114 * 115.23028 * 14 11 10 16 16 C 1.38612 * 120.24914 * 180.02562 * 15 14 11 17 17 C 1.38659 * 120.50220 * 359.97438 * 16 15 14 18 18 C 1.37592 * 120.24614 * 0.02562 * 17 16 15 19 19 C 1.40704 * 120.12867 * 294.95463 * 14 11 10 20 20 C 1.41400 * 120.24069 * 359.97438 * 19 14 11 21 21 H 1.07999 * 119.99601 * 328.78358 * 20 19 14 22 22 C 1.39942 * 119.99822 * 148.78201 * 20 19 14 23 23 N 1.30823 * 120.00132 * 349.67400 * 22 20 19 24 24 Si 1.86801 * 119.99918 * 169.66300 * 22 20 19 25 25 H 1.48506 * 109.46543 * 60.00449 * 24 22 20 26 26 H 1.48494 * 109.47129 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47323 * 300.00735 * 24 22 20 28 28 H 1.08994 * 109.47485 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47065 * 299.99624 * 1 2 3 30 30 H 1.09002 * 109.47482 * 59.99779 * 1 2 3 31 31 H 1.09004 * 109.46596 * 240.00495 * 2 1 3 32 32 H 1.08994 * 109.47658 * 120.00491 * 2 1 3 33 33 H 0.96999 * 117.70625 * 184.29863 * 7 5 3 34 34 H 1.08996 * 109.21933 * 98.16649 * 8 7 5 35 35 H 1.09002 * 109.21895 * 217.50491 * 8 7 5 36 36 H 1.08998 * 109.91018 * 287.35058 * 9 8 7 37 37 H 1.08998 * 109.68567 * 166.63992 * 9 8 7 38 38 H 1.07995 * 119.86874 * 0.02562 * 15 14 11 39 39 H 1.07997 * 119.74601 * 179.97438 * 16 15 14 40 40 H 1.08001 * 119.87521 * 179.97438 * 17 16 15 41 41 H 1.08005 * 120.12159 * 179.97438 * 18 17 16 42 42 H 0.97006 * 120.00049 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6031 1.9860 0.8378 5 6 3.5393 1.4469 0.1234 6 8 4.0323 1.1642 1.1948 7 7 4.3514 1.7469 -0.8913 8 6 3.9047 2.1958 -2.2028 9 6 2.4569 1.7651 -2.4575 10 7 1.6643 2.0978 -1.2617 11 16 0.4010 3.1658 -1.3351 12 8 -0.1584 3.0372 -2.6350 13 8 -0.3510 2.9805 -0.1437 14 6 1.0834 4.7878 -1.2453 15 6 0.9678 5.6462 -2.3151 16 6 1.5042 6.9226 -2.2474 17 6 2.1618 7.3498 -1.1038 18 6 2.2892 6.5087 -0.0224 19 6 1.7435 5.2127 -0.0777 20 6 1.8628 4.3418 1.0299 21 1 1.0937 3.6094 1.2262 22 6 2.9773 4.4290 1.8717 23 7 4.0005 5.1680 1.5279 24 14 3.0038 3.4902 3.4865 25 1 2.8715 2.0360 3.2157 26 1 4.2866 3.7488 4.1883 27 1 1.8742 3.9397 4.3391 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.3066 1.6640 -0.7441 34 1 3.9732 3.2825 -2.2526 35 1 4.5468 1.7611 -2.9688 36 1 2.4156 0.6911 -2.6390 37 1 2.0614 2.2994 -3.3212 38 1 0.4573 5.3240 -3.2106 39 1 1.4092 7.5892 -3.0917 40 1 2.5762 8.3463 -1.0622 41 1 2.8021 6.8435 0.8671 42 1 4.7733 5.2282 2.1112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601340027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:45 Heat of formation + Delta-G solvation = -106.537852 kcal Electronic energy + Delta-G solvation = -30163.994984 eV Core-core repulsion = 26234.811058 eV Total energy + Delta-G solvation = -3929.183926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.30720 -39.38853 -38.19759 -37.90903 -36.74188 -35.90085 -35.63368 -33.19108 -32.02096 -31.36141 -30.22358 -27.59713 -27.28110 -24.61902 -23.42691 -23.09899 -22.93923 -20.62180 -19.65245 -19.38339 -19.00988 -18.13072 -17.78003 -17.52185 -17.11619 -16.60149 -16.27670 -16.05988 -15.55780 -15.27624 -15.21098 -15.07966 -14.83031 -14.47134 -13.99748 -13.82715 -13.66173 -13.52935 -13.38896 -13.14718 -13.03514 -12.97309 -12.88752 -12.79706 -12.77021 -12.37826 -12.33174 -12.22010 -12.08016 -11.84872 -11.66741 -11.20358 -11.10558 -10.87407 -10.02779 -9.89766 -9.74481 -9.40500 -8.82821 -6.65213 -0.28302 0.52962 0.97930 1.30944 1.37899 1.51863 1.70107 2.07136 2.14585 2.44297 2.62105 2.95876 3.43714 3.55024 3.56879 3.86354 3.99758 4.08664 4.18664 4.32250 4.39705 4.47525 4.48642 4.51012 4.65891 4.72060 4.84758 4.85441 4.96311 5.01738 5.09018 5.14819 5.19165 5.26519 5.38387 5.52495 5.53429 5.71503 5.84894 5.96120 6.00149 6.11134 6.38642 6.49369 6.69723 6.82710 7.28217 8.10547 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009910 B = 0.009038 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.731137 B = 3097.206815 C = 4314.715223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.140 3.860 4 H 0.111 0.889 5 C 0.530 3.470 6 O -0.586 6.586 7 N -0.703 5.703 8 C 0.096 3.904 9 C 0.098 3.902 10 N -0.988 5.988 11 S 2.719 3.281 12 O -0.996 6.996 13 O -0.990 6.990 14 C -0.793 4.793 15 C -0.015 4.015 16 C -0.244 4.244 17 C -0.075 4.075 18 C -0.184 4.184 19 C 0.176 3.824 20 C -0.496 4.496 21 H 0.102 0.898 22 C 0.073 3.927 23 N -0.791 5.791 24 Si 0.922 3.078 25 H -0.237 1.237 26 H -0.273 1.273 27 H -0.263 1.263 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.402 0.598 34 H 0.053 0.947 35 H 0.131 0.869 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.108 0.892 42 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.918 -7.448 -7.630 10.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C 0.031 3.969 4 H 0.129 0.871 5 C 0.315 3.685 6 O -0.466 6.466 7 N -0.353 5.353 8 C -0.029 4.029 9 C -0.026 4.026 10 N -0.826 5.826 11 S 2.817 3.183 12 O -0.986 6.986 13 O -0.980 6.980 14 C -0.887 4.887 15 C -0.035 4.035 16 C -0.264 4.264 17 C -0.093 4.093 18 C -0.204 4.204 19 C 0.171 3.829 20 C -0.524 4.524 21 H 0.120 0.880 22 C -0.147 4.147 23 N -0.415 5.415 24 Si 0.744 3.256 25 H -0.161 1.161 26 H -0.197 1.197 27 H -0.187 1.187 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.237 0.763 34 H 0.072 0.928 35 H 0.149 0.851 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.138 0.862 41 H 0.126 0.874 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.268 -7.744 -7.164 10.626 hybrid contribution 1.169 0.903 1.142 1.867 sum 2.436 -6.841 -6.023 9.435 Atomic orbital electron populations 1.21791 0.94510 1.02977 1.01474 1.21822 0.97153 0.92788 1.04339 1.21348 0.91168 0.96787 0.87603 0.87149 1.20141 0.89983 0.75084 0.83246 1.90700 1.76809 1.51792 1.27310 1.45131 1.10124 1.66951 1.13102 1.21946 0.96775 1.00029 0.84148 1.22118 0.89642 1.04175 0.86695 1.57770 1.51631 1.58334 1.14824 1.00563 0.72704 0.73188 0.71835 1.93432 1.76586 1.87414 1.41204 1.93454 1.69331 1.86481 1.48742 1.30256 1.32138 1.23256 1.03014 1.20580 0.93944 0.93694 0.95294 1.20908 1.08219 0.97533 0.99736 1.21241 0.96020 0.98596 0.93490 1.21527 1.05256 0.94392 0.99201 1.17189 0.84926 0.91500 0.89268 1.20359 1.05847 1.17445 1.08748 0.88006 1.26181 0.93972 0.94323 1.00255 1.69764 1.04367 1.30813 1.36524 0.86082 0.78481 0.82199 0.78835 1.16052 1.19719 1.18742 0.89324 0.92932 0.94583 0.88728 0.89825 0.76279 0.92837 0.85076 0.86916 0.86770 0.85625 0.85323 0.86190 0.87410 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 8.82 71.98 0.63 -3.65 16 2 C -0.12 -3.46 5.50 30.60 0.17 -3.30 16 3 C 0.14 5.04 1.63 44.06 0.07 5.11 16 4 H 0.11 4.75 4.65 -2.39 -0.01 4.74 16 5 C 0.53 19.32 7.10 87.79 0.62 19.94 16 6 O -0.59 -24.98 16.12 -3.02 -0.05 -25.03 16 7 N -0.70 -20.50 5.42 -466.77 -2.53 -23.03 16 8 C 0.10 2.23 7.34 86.60 0.64 2.87 16 9 C 0.10 2.39 6.38 86.29 0.55 2.94 16 10 N -0.99 -33.59 2.47 -494.32 -1.22 -34.81 16 11 S 2.72 112.16 4.28 -56.49 -0.24 111.92 16 12 O -1.00 -40.82 15.94 -128.00 -2.04 -42.87 16 13 O -0.99 -45.76 13.31 -128.00 -1.70 -47.47 16 14 C -0.79 -36.07 5.96 22.73 0.14 -35.93 16 15 C -0.02 -0.64 9.54 22.22 0.21 -0.43 16 16 C -0.24 -9.66 10.05 22.46 0.23 -9.44 16 17 C -0.07 -3.16 10.02 22.22 0.22 -2.93 16 18 C -0.18 -8.95 8.64 22.73 0.20 -8.75 16 19 C 0.18 8.74 5.52 -21.29 -0.12 8.63 16 20 C -0.50 -24.92 6.58 23.46 0.15 -24.76 16 21 H 0.10 5.23 3.91 -2.91 -0.01 5.22 16 22 C 0.07 3.56 5.25 85.26 0.45 4.01 16 23 N -0.79 -38.58 10.97 21.83 0.24 -38.34 16 24 Si 0.92 40.24 28.73 68.60 1.97 42.21 16 25 H -0.24 -10.59 6.31 99.48 0.63 -9.96 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 27 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 28 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.05 1.69 8.04 -2.38 -0.02 1.67 16 30 H 0.04 1.08 6.75 -2.39 -0.02 1.07 16 31 H 0.09 2.13 7.34 -2.39 -0.02 2.11 16 32 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.40 10.54 8.80 -92.71 -0.82 9.72 16 34 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.11 1.99 7.39 -2.39 -0.02 1.97 16 37 H 0.11 2.58 7.29 -2.39 -0.02 2.56 16 38 H 0.13 4.69 7.32 -2.91 -0.02 4.67 16 39 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 40 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 41 H 0.11 5.46 6.38 -2.91 -0.02 5.45 16 42 H 0.29 13.25 8.30 -92.70 -0.77 12.49 16 Total: -1.00 -65.63 340.94 -1.23 -66.86 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: 0.18 Total: 36.25 kcal Atomic # 6 Polarization: -49.86 SS G_CDS: 4.16 Total: -45.70 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -3.51 Total: -96.18 kcal Atomic # 8 Polarization: -111.57 SS G_CDS: -3.79 Total: -115.36 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 1.97 Total: 42.21 kcal Atomic # 16 Polarization: 112.16 SS G_CDS: -0.24 Total: 111.92 kcal Total: -65.63 -1.23 -66.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601340027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.681 kcal (2) G-P(sol) polarization free energy of solvation -65.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds