Wall clock time and date at job start Tue Mar 31 2020 20:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 110.86003 * 2 1 4 4 C 1.54484 * 110.97301 * 236.16410 * 2 1 3 5 5 N 1.46753 * 105.53350 * 267.08937 * 4 2 1 6 6 C 1.34419 * 111.30413 * 343.36353 * 5 4 2 7 7 O 1.21282 * 124.93846 * 180.27213 * 6 5 4 8 8 C 1.51278 * 110.11793 * 0.02562 * 6 5 4 9 9 H 1.08992 * 110.48758 * 135.30202 * 8 6 5 10 10 N 1.46495 * 110.48619 * 257.82058 * 8 6 5 11 11 S 1.65605 * 119.99756 * 265.88147 * 10 8 6 12 12 O 1.42099 * 106.40438 * 180.16916 * 11 10 8 13 13 O 1.42107 * 106.40121 * 313.08722 * 11 10 8 14 14 C 1.76194 * 107.21891 * 66.62343 * 11 10 8 15 15 C 1.37639 * 120.13284 * 243.84486 * 14 11 10 16 16 C 1.38610 * 120.25049 * 179.97438 * 15 14 11 17 17 C 1.38649 * 120.50480 * 0.02562 * 16 15 14 18 18 C 1.37604 * 120.24877 * 0.02562 * 17 16 15 19 19 C 1.40702 * 120.12691 * 63.57635 * 14 11 10 20 20 C 1.41396 * 120.24267 * 359.97438 * 19 14 11 21 21 H 1.08003 * 120.00363 * 329.27827 * 20 19 14 22 22 C 1.39944 * 119.99889 * 149.27412 * 20 19 14 23 23 N 1.30828 * 120.00116 * 349.56135 * 22 20 19 24 24 Si 1.86805 * 119.99938 * 169.55790 * 22 20 19 25 25 H 1.48491 * 109.47002 * 90.00304 * 24 22 20 26 26 H 1.48505 * 109.46816 * 210.00021 * 24 22 20 27 27 H 1.48497 * 109.47225 * 329.99864 * 24 22 20 28 28 H 1.08997 * 109.47125 * 296.21182 * 1 2 3 29 29 H 1.09001 * 109.47203 * 56.21444 * 1 2 3 30 30 H 1.09000 * 109.47157 * 176.21569 * 1 2 3 31 31 H 1.08998 * 109.47355 * 183.79096 * 3 2 1 32 32 H 1.09003 * 109.46565 * 303.78895 * 3 2 1 33 33 H 1.08992 * 109.47296 * 63.78191 * 3 2 1 34 34 H 1.08997 * 110.23942 * 26.29899 * 4 2 1 35 35 H 1.08997 * 110.24353 * 148.20964 * 4 2 1 36 36 H 0.97001 * 124.34477 * 163.21338 * 5 4 2 37 37 H 0.96998 * 120.00669 * 85.87945 * 10 8 6 38 38 H 1.08002 * 119.87089 * 0.02562 * 15 14 11 39 39 H 1.07997 * 119.74830 * 180.02562 * 16 15 14 40 40 H 1.07999 * 119.88226 * 180.02562 * 17 16 15 41 41 H 1.07996 * 120.13205 * 179.97438 * 18 17 16 42 42 H 0.96997 * 119.99982 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0748 1.4298 0.0000 4 6 2.0829 -0.8032 -1.1982 5 7 2.2906 -2.1662 -0.6954 6 6 2.2955 -2.1955 0.6485 7 8 2.4523 -3.1926 1.3209 8 6 2.0830 -0.8030 1.2001 9 1 1.3597 -0.8218 2.0152 10 7 3.3530 -0.2329 1.6562 11 16 3.8011 -0.3739 3.2442 12 8 5.0595 0.2749 3.3653 13 8 2.6634 -0.0135 4.0157 14 6 4.0910 -2.0840 3.5544 15 6 3.3023 -2.7668 4.4523 16 6 3.5279 -4.1122 4.6978 17 6 4.5487 -4.7854 4.0441 18 6 5.3503 -4.1227 3.1432 19 6 5.1262 -2.7582 2.8810 20 6 5.9389 -2.0687 1.9519 21 1 5.5308 -1.2459 1.3836 22 6 7.2723 -2.4523 1.7687 23 7 7.8267 -3.3047 2.5918 24 14 8.2603 -1.7471 0.3488 25 1 8.9389 -0.5016 0.7884 26 1 9.2775 -2.7377 -0.0865 27 1 7.3502 -1.4417 -0.7841 28 1 -0.3633 0.4539 0.9220 29 1 -0.3634 0.5715 -0.8541 30 1 -0.3633 -1.0254 -0.0678 31 1 3.1623 1.4042 -0.0679 32 1 1.6700 1.9727 -0.8541 33 1 1.7799 1.9309 0.9219 34 1 1.3617 -0.8056 -2.0155 35 1 3.0295 -0.3786 -1.5323 36 1 2.4070 -2.9461 -1.2603 37 1 3.9316 0.2272 1.0281 38 1 2.5041 -2.2524 4.9668 39 1 2.9039 -4.6401 5.4036 40 1 4.7153 -5.8338 4.2427 41 1 6.1451 -4.6488 2.6354 42 1 8.7507 -3.5709 2.4646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601468075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:45 Heat of formation + Delta-G solvation = -85.651799 kcal Electronic energy + Delta-G solvation = -29423.474590 eV Core-core repulsion = 25495.196351 eV Total energy + Delta-G solvation = -3928.278239 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.57429 -37.41281 -36.84116 -36.21425 -34.84478 -34.15926 -33.71871 -32.50759 -30.06244 -29.39175 -27.76903 -26.51538 -25.80249 -25.37716 -21.53378 -21.00910 -20.41676 -19.64488 -18.77085 -17.58118 -17.12125 -16.79475 -16.33610 -15.85791 -15.34669 -14.93100 -14.88803 -14.36873 -14.19382 -14.13197 -13.54874 -13.23785 -13.17058 -13.05391 -12.69128 -12.62809 -12.40426 -12.04770 -11.76632 -11.63225 -11.41603 -11.24891 -11.21023 -11.09471 -11.09175 -11.04720 -10.99692 -10.70485 -10.57703 -10.42954 -10.34933 -9.75205 -9.33084 -9.19297 -8.84724 -8.63628 -7.81074 -7.37694 -6.89798 -4.62327 1.49185 2.51956 2.87021 2.93925 2.99204 3.01574 3.23229 3.55688 3.83301 3.99575 4.18908 4.43397 4.55420 4.64166 4.74549 4.88377 5.13921 5.32747 5.35363 5.48610 5.50902 5.58730 5.66496 5.72319 5.76825 5.88610 6.00200 6.10518 6.19086 6.26916 6.39011 6.55442 6.89110 7.00468 7.08610 7.25131 7.27792 7.40318 7.50004 7.66157 7.81429 7.98471 8.04135 8.43943 8.62363 8.64046 8.83222 10.04532 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.010932 B = 0.006570 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.643702 B = 4261.031945 C = 4972.915797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 C -0.135 4.135 4 C 0.111 3.889 5 N -0.734 5.734 6 C 0.500 3.500 7 O -0.482 6.482 8 C 0.134 3.866 9 H 0.121 0.879 10 N -1.101 6.101 11 S 2.693 3.307 12 O -0.960 6.960 13 O -0.995 6.995 14 C -0.754 4.754 15 C 0.003 3.997 16 C -0.238 4.238 17 C -0.074 4.074 18 C -0.149 4.149 19 C 0.205 3.795 20 C -0.456 4.456 21 H 0.079 0.921 22 C 0.082 3.918 23 N -0.784 5.784 24 Si 0.912 3.088 25 H -0.263 1.263 26 H -0.275 1.275 27 H -0.260 1.260 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.407 0.593 37 H 0.413 0.587 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.603 5.675 -10.404 15.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.085 4.085 3 C -0.193 4.193 4 C -0.014 4.014 5 N -0.392 5.392 6 C 0.281 3.719 7 O -0.352 6.352 8 C 0.021 3.979 9 H 0.139 0.861 10 N -0.858 5.858 11 S 2.792 3.208 12 O -0.951 6.951 13 O -0.986 6.986 14 C -0.851 4.851 15 C -0.017 4.017 16 C -0.259 4.259 17 C -0.093 4.093 18 C -0.169 4.169 19 C 0.200 3.800 20 C -0.485 4.485 21 H 0.097 0.903 22 C -0.138 4.138 23 N -0.408 5.408 24 Si 0.735 3.265 25 H -0.188 1.188 26 H -0.199 1.199 27 H -0.183 1.183 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.246 0.754 37 H 0.249 0.751 38 H 0.121 0.879 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.137 0.863 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.343 5.771 -9.162 14.302 hybrid contribution 0.969 -0.800 -1.395 1.877 sum -8.375 4.972 -10.556 14.363 Atomic orbital electron populations 1.21803 0.92361 1.02488 1.02861 1.21756 0.96744 0.96149 0.93879 1.21744 1.01244 0.93558 1.02759 1.22155 1.00775 0.82296 0.96194 1.46102 1.75523 1.09843 1.07773 1.21296 0.76360 0.91470 0.82732 1.90906 1.45760 1.36592 1.61942 1.21390 0.87311 0.90805 0.98352 0.86114 1.55782 1.28390 1.71057 1.30566 1.01329 0.72573 0.75473 0.71411 1.93553 1.41878 1.75361 1.84301 1.93443 1.52969 1.84000 1.68172 1.29683 1.15779 1.22293 1.17304 1.20107 0.94421 0.94062 0.93071 1.20397 1.03238 0.95017 1.07230 1.20830 0.94933 0.97466 0.96035 1.21357 1.00202 0.94643 1.00686 1.16851 0.86057 0.90998 0.86067 1.19666 0.95327 1.14049 1.19489 0.90266 1.25864 0.98263 0.93484 0.96175 1.69784 1.13990 1.25197 1.31823 0.86246 0.79488 0.79774 0.80966 1.18776 1.19942 1.18347 0.91397 0.91641 0.92134 0.91822 0.91881 0.91209 0.90427 0.91102 0.75410 0.75121 0.87888 0.89073 0.89204 0.86325 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.49 37.15 0.32 -0.85 16 2 C -0.08 -0.86 0.96 -152.88 -0.15 -1.00 16 3 C -0.14 -1.23 7.89 37.16 0.29 -0.93 16 4 C 0.11 1.05 6.90 -3.13 -0.02 1.03 16 5 N -0.73 -9.38 6.24 -59.21 -0.37 -9.74 16 6 C 0.50 8.56 8.07 -10.86 -0.09 8.47 16 7 O -0.48 -10.58 16.50 5.56 0.09 -10.49 16 8 C 0.13 2.03 3.00 -67.95 -0.20 1.83 16 9 H 0.12 1.90 7.32 -51.93 -0.38 1.52 16 10 N -1.10 -19.00 3.95 -4.91 -0.02 -19.02 16 11 S 2.69 59.84 4.96 -107.50 -0.53 59.31 16 12 O -0.96 -24.00 16.74 -57.17 -0.96 -24.96 16 13 O -1.00 -22.59 16.29 -57.17 -0.93 -23.52 16 14 C -0.75 -18.89 4.82 -38.87 -0.19 -19.07 16 15 C 0.00 0.08 9.53 -39.66 -0.38 -0.30 16 16 C -0.24 -5.65 10.05 -39.29 -0.39 -6.04 16 17 C -0.07 -1.79 10.02 -39.66 -0.40 -2.19 16 18 C -0.15 -3.94 8.65 -38.87 -0.34 -4.27 16 19 C 0.20 5.44 5.17 -106.82 -0.55 4.89 16 20 C -0.46 -11.78 7.61 -37.74 -0.29 -12.07 16 21 H 0.08 1.89 5.72 -52.48 -0.30 1.59 16 22 C 0.08 2.05 5.25 -17.34 -0.09 1.95 16 23 N -0.78 -20.11 10.94 55.55 0.61 -19.51 16 24 Si 0.91 18.49 29.57 -169.99 -5.03 13.46 16 25 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 26 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 27 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.59 6.30 -51.93 -0.33 0.26 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.53 7.91 -51.93 -0.41 0.12 16 35 H 0.07 0.64 7.82 -51.93 -0.41 0.24 16 36 H 0.41 4.66 8.96 -40.82 -0.37 4.29 16 37 H 0.41 6.25 6.54 -34.47 -0.23 6.02 16 38 H 0.10 2.31 7.33 -52.49 -0.38 1.93 16 39 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 40 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 41 H 0.12 3.18 6.34 -52.49 -0.33 2.84 16 42 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -34.16 352.30 -9.53 -43.69 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -5.23 Total: 14.03 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: -2.48 Total: -28.56 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.22 Total: -48.27 kcal Atomic # 8 Polarization: -57.18 SS G_CDS: -1.80 Total: -58.97 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Atomic # 16 Polarization: 59.84 SS G_CDS: -0.53 Total: 59.31 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.16 -9.53 -43.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601468075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.963 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds