Wall clock time and date at job start Tue Mar 31 2020 21:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47192 * 2 1 4 4 H 1.08998 * 109.56657 * 59.98185 * 3 2 1 5 5 C 1.50438 * 109.56221 * 299.74748 * 3 2 1 6 6 O 1.21273 * 118.49389 * 47.45169 * 5 3 2 7 7 N 1.33380 * 123.01785 * 227.46844 * 5 3 2 8 8 C 1.45655 * 124.59056 * 4.58210 * 7 5 3 9 9 C 1.53180 * 110.66363 * 337.67400 * 8 7 5 10 10 N 1.47045 * 109.56611 * 180.33873 * 3 2 1 11 11 S 1.65606 * 121.35592 * 342.53880 * 10 3 2 12 12 O 1.42095 * 106.39920 * 194.90452 * 11 10 3 13 13 O 1.42102 * 106.40080 * 327.82426 * 11 10 3 14 14 C 1.76205 * 107.21765 * 81.36302 * 11 10 3 15 15 C 1.38658 * 119.87568 * 269.72768 * 14 11 10 16 16 C 1.38609 * 120.49630 * 179.72306 * 15 14 11 17 17 C 1.37631 * 120.25006 * 0.55182 * 16 15 14 18 18 C 1.40694 * 119.74932 * 359.72753 * 17 16 15 19 19 C 1.41391 * 120.24878 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00124 * 154.52850 * 19 18 17 21 21 C 1.39947 * 119.99956 * 334.52316 * 19 18 17 22 22 N 1.30831 * 119.99967 * 340.97367 * 21 19 18 23 23 Si 1.86801 * 120.00133 * 160.97361 * 21 19 18 24 24 H 1.48499 * 109.46855 * 94.98409 * 23 21 19 25 25 H 1.48494 * 109.47014 * 214.98291 * 23 21 19 26 26 H 1.48494 * 109.47103 * 334.98184 * 23 21 19 27 27 C 1.37592 * 119.87226 * 90.00330 * 14 11 10 28 28 H 1.08998 * 109.46841 * 189.50345 * 1 2 3 29 29 H 1.08998 * 109.47225 * 309.50886 * 1 2 3 30 30 H 1.09001 * 109.46657 * 69.50777 * 1 2 3 31 31 H 1.08995 * 109.47137 * 239.99786 * 2 1 3 32 32 H 1.09001 * 109.46871 * 119.99764 * 2 1 3 33 33 H 0.96997 * 117.70689 * 184.30076 * 7 5 3 34 34 H 1.09004 * 109.21504 * 98.17225 * 8 7 5 35 35 H 1.09000 * 109.21585 * 217.50616 * 8 7 5 36 36 H 1.08996 * 109.90694 * 287.34556 * 9 8 7 37 37 H 1.09000 * 109.67912 * 166.63691 * 9 8 7 38 38 H 1.07997 * 119.74545 * 359.97438 * 15 14 11 39 39 H 1.08006 * 119.87383 * 180.27988 * 16 15 14 40 40 H 1.08009 * 120.12998 * 179.74947 * 17 16 15 41 41 H 0.96999 * 120.00141 * 179.97438 * 22 21 19 42 42 H 1.08006 * 120.13201 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6774 1.9580 0.8893 5 6 1.5449 2.1519 -1.2307 6 8 0.3724 2.0516 -1.5240 7 7 2.3362 2.8858 -2.0145 8 6 3.7765 3.0186 -1.8432 9 6 4.1815 2.6954 -0.4017 10 7 3.5105 1.4450 -0.0082 11 16 4.3768 0.0965 0.4087 12 8 5.7110 0.5305 0.6337 13 8 3.6069 -0.5884 1.3871 14 6 4.4262 -0.9502 -1.0079 15 6 3.4365 -1.9026 -1.1978 16 6 3.4596 -2.7289 -2.3105 17 6 4.4739 -2.6196 -3.2343 18 6 5.4867 -1.6608 -3.0490 19 6 6.5340 -1.5398 -3.9911 20 1 7.0562 -0.6008 -4.1004 21 6 6.8940 -2.6368 -4.7819 22 7 6.5487 -3.8456 -4.4198 23 14 7.8677 -2.3752 -6.3545 24 1 9.3155 -2.5514 -6.0753 25 1 7.4362 -3.3647 -7.3742 26 1 7.6253 -1.0017 -6.8640 27 6 5.4499 -0.8233 -1.9185 28 1 -0.3633 -1.0136 0.1697 29 1 -0.3633 0.6538 0.7928 30 1 -0.3633 0.3598 -0.9627 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.9241 3.3615 -2.7526 34 1 4.2833 2.3344 -2.5239 35 1 4.0728 4.0412 -2.0770 36 1 3.8716 3.5034 0.2609 37 1 5.2624 2.5666 -0.3443 38 1 2.6394 -1.9984 -0.4754 39 1 2.6811 -3.4642 -2.4507 40 1 4.4922 -3.2672 -4.0985 41 1 6.7979 -4.6060 -4.9681 42 1 6.2221 -0.0835 -1.7665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619482533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:49 Heat of formation + Delta-G solvation = -69.964065 kcal Electronic energy + Delta-G solvation = -28768.528332 eV Core-core repulsion = 24840.930364 eV Total energy + Delta-G solvation = -3927.597968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.43432 -37.77153 -37.16620 -36.83302 -35.51887 -34.99519 -33.90958 -32.19858 -30.15537 -29.88972 -29.40610 -26.00618 -25.61807 -24.04340 -22.11588 -21.93796 -20.97023 -19.85257 -18.69485 -18.21915 -17.31224 -17.15306 -16.34394 -15.93883 -15.82103 -15.55312 -15.22310 -14.86111 -14.74810 -14.17892 -13.57535 -13.51611 -13.46725 -13.24661 -12.78866 -12.67260 -12.54486 -12.13694 -12.09041 -11.84149 -11.80462 -11.64960 -11.52995 -11.42601 -11.33704 -11.15450 -10.98883 -10.86022 -10.69376 -10.38158 -9.84055 -9.77559 -9.46565 -9.37099 -9.17354 -8.84887 -8.09941 -7.73580 -6.98486 -4.58463 0.77200 2.09795 2.57569 2.59827 2.96271 2.97262 3.02768 3.06518 3.35547 3.78348 4.07291 4.31063 4.45746 4.54533 4.62277 4.87758 4.96635 5.10082 5.21828 5.30886 5.41443 5.53029 5.71398 5.76475 5.80811 5.95263 6.05390 6.12664 6.28835 6.38973 6.42856 6.57741 6.66754 6.69190 6.77560 6.83318 6.98057 7.15255 7.27385 7.30287 7.65668 7.73490 7.87466 8.19976 8.33344 8.61067 8.65430 9.97968 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014145 B = 0.004287 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.981800 B = 6529.347290 C = 6671.513391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.203 4.203 3 C 0.156 3.844 4 H 0.105 0.895 5 C 0.519 3.481 6 O -0.542 6.542 7 N -0.714 5.714 8 C 0.091 3.909 9 C 0.103 3.897 10 N -1.004 6.004 11 S 2.689 3.311 12 O -0.965 6.965 13 O -0.964 6.964 14 C -0.631 4.631 15 C -0.153 4.153 16 C -0.119 4.119 17 C -0.116 4.116 18 C 0.094 3.906 19 C -0.462 4.462 20 H 0.083 0.917 21 C 0.076 3.924 22 N -0.791 5.791 23 Si 0.910 3.090 24 H -0.269 1.269 25 H -0.274 1.274 26 H -0.259 1.259 27 C -0.125 4.125 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.135 0.865 33 H 0.398 0.602 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.121 0.879 41 H 0.284 0.716 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.086 10.803 3.534 12.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.241 4.241 3 C 0.048 3.952 4 H 0.123 0.877 5 C 0.304 3.696 6 O -0.420 6.420 7 N -0.366 5.366 8 C -0.035 4.035 9 C -0.022 4.022 10 N -0.842 5.842 11 S 2.788 3.212 12 O -0.956 6.956 13 O -0.954 6.954 14 C -0.724 4.724 15 C -0.174 4.174 16 C -0.138 4.138 17 C -0.136 4.136 18 C 0.090 3.910 19 C -0.491 4.491 20 H 0.101 0.899 21 C -0.143 4.143 22 N -0.416 5.416 23 Si 0.734 3.266 24 H -0.194 1.194 25 H -0.199 1.199 26 H -0.183 1.183 27 C -0.147 4.147 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.152 0.848 33 H 0.233 0.767 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.117 0.883 40 H 0.139 0.861 41 H 0.095 0.905 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.153 10.258 4.383 12.288 hybrid contribution 0.385 -0.038 -1.861 1.901 sum -4.768 10.221 2.521 11.556 Atomic orbital electron populations 1.21812 0.93305 1.01086 1.03878 1.23226 0.99704 0.93128 1.08074 1.21096 0.78809 0.99177 0.96155 0.87701 1.20343 0.85968 0.78406 0.84868 1.90682 1.16992 1.61586 1.72703 1.45301 1.08619 1.50025 1.32608 1.21863 0.80784 1.02779 0.98069 1.21841 0.99662 0.86348 0.94381 1.58216 1.14280 1.26384 1.85273 1.01804 0.72148 0.72305 0.74933 1.93511 1.35094 1.81531 1.85432 1.93401 1.70223 1.73257 1.58541 1.29690 1.06069 1.16041 1.20554 1.20277 0.98786 0.98498 0.99791 1.20819 0.98643 0.98823 0.95544 1.21587 0.92770 1.00204 0.99005 1.17659 0.92029 0.90728 0.90576 1.19572 1.15061 0.98067 1.16395 0.89936 1.25935 0.95300 0.94379 0.98646 1.69791 1.36901 0.99309 1.35550 0.86265 0.79894 0.79699 0.80771 1.19366 1.19920 1.18293 1.20698 0.96731 1.03258 0.93966 0.92844 0.93142 0.89984 0.88599 0.84798 0.76685 0.90307 0.89356 0.89974 0.86537 0.86673 0.88295 0.86071 0.90480 0.87145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.08 37.16 0.34 -1.67 16 2 C -0.20 -3.12 3.31 -26.73 -0.09 -3.21 16 3 C 0.16 2.18 3.18 -68.91 -0.22 1.96 16 4 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 5 C 0.52 7.36 7.35 -11.73 -0.09 7.27 16 6 O -0.54 -8.95 14.29 5.56 0.08 -8.88 16 7 N -0.71 -8.18 5.42 -61.22 -0.33 -8.51 16 8 C 0.09 0.88 7.34 -4.40 -0.03 0.85 16 9 C 0.10 1.11 6.58 -3.53 -0.02 1.08 16 10 N -1.00 -14.14 3.29 -107.61 -0.35 -14.50 16 11 S 2.69 48.13 5.19 -107.50 -0.56 47.57 16 12 O -0.97 -18.86 15.77 -57.17 -0.90 -19.76 16 13 O -0.96 -18.31 13.68 -57.17 -0.78 -19.09 16 14 C -0.63 -13.16 5.73 -39.66 -0.23 -13.39 16 15 C -0.15 -3.19 7.32 -39.29 -0.29 -3.48 16 16 C -0.12 -2.60 10.02 -39.67 -0.40 -3.00 16 17 C -0.12 -2.81 8.69 -38.88 -0.34 -3.15 16 18 C 0.09 2.33 5.56 -106.83 -0.59 1.73 16 19 C -0.46 -11.40 9.04 -37.74 -0.34 -11.75 16 20 H 0.08 1.93 7.91 -52.49 -0.42 1.51 16 21 C 0.08 1.80 5.10 -17.34 -0.09 1.71 16 22 N -0.79 -19.37 11.10 55.55 0.62 -18.75 16 23 Si 0.91 17.53 29.60 -169.99 -5.03 12.50 16 24 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 25 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 26 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 27 C -0.13 -2.85 9.26 -38.87 -0.36 -3.21 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.64 8.12 -51.93 -0.42 0.21 16 30 H 0.08 1.27 5.69 -51.93 -0.30 0.97 16 31 H 0.10 1.62 4.56 -51.93 -0.24 1.38 16 32 H 0.13 2.16 4.69 -52.07 -0.24 1.92 16 33 H 0.40 3.95 8.80 -40.82 -0.36 3.59 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.12 1.23 6.88 -51.93 -0.36 0.87 16 38 H 0.12 2.17 5.47 -52.49 -0.29 1.89 16 39 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 40 H 0.12 3.00 6.29 -52.48 -0.33 2.67 16 41 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 42 H 0.11 2.36 7.60 -52.48 -0.40 1.96 16 LS Contribution 340.30 15.07 5.13 5.13 Total: -1.00 -30.31 340.30 -9.90 -40.20 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -5.02 Total: 12.32 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: -2.75 Total: -28.23 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: -0.07 Total: -41.76 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -1.60 Total: -47.73 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Atomic # 16 Polarization: 48.13 SS G_CDS: -0.56 Total: 47.57 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.31 -9.90 -40.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619482533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.760 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds