Wall clock time and date at job start Tue Mar 31 2020 21:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47192 * 2 1 4 4 H 1.08998 * 109.56657 * 59.98185 * 3 2 1 5 5 C 1.50438 * 109.56221 * 299.74748 * 3 2 1 6 6 O 1.21273 * 118.49389 * 47.45169 * 5 3 2 7 7 N 1.33380 * 123.01785 * 227.46844 * 5 3 2 8 8 C 1.45655 * 124.59056 * 4.58210 * 7 5 3 9 9 C 1.53180 * 110.66363 * 337.67400 * 8 7 5 10 10 N 1.47045 * 109.56611 * 180.33873 * 3 2 1 11 11 S 1.65606 * 121.35592 * 342.53880 * 10 3 2 12 12 O 1.42095 * 106.39920 * 194.90452 * 11 10 3 13 13 O 1.42102 * 106.40080 * 327.82426 * 11 10 3 14 14 C 1.76205 * 107.21765 * 81.36302 * 11 10 3 15 15 C 1.38658 * 119.87568 * 269.72768 * 14 11 10 16 16 C 1.38609 * 120.49630 * 179.72306 * 15 14 11 17 17 C 1.37631 * 120.25006 * 0.55182 * 16 15 14 18 18 C 1.40694 * 119.74932 * 359.72753 * 17 16 15 19 19 C 1.41391 * 120.24878 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00124 * 154.52850 * 19 18 17 21 21 C 1.39947 * 119.99956 * 334.52316 * 19 18 17 22 22 N 1.30831 * 119.99967 * 340.97367 * 21 19 18 23 23 Si 1.86801 * 120.00133 * 160.97361 * 21 19 18 24 24 H 1.48499 * 109.46855 * 94.98409 * 23 21 19 25 25 H 1.48494 * 109.47014 * 214.98291 * 23 21 19 26 26 H 1.48494 * 109.47103 * 334.98184 * 23 21 19 27 27 C 1.37592 * 119.87226 * 90.00330 * 14 11 10 28 28 H 1.08998 * 109.46841 * 189.50345 * 1 2 3 29 29 H 1.08998 * 109.47225 * 309.50886 * 1 2 3 30 30 H 1.09001 * 109.46657 * 69.50777 * 1 2 3 31 31 H 1.08995 * 109.47137 * 239.99786 * 2 1 3 32 32 H 1.09001 * 109.46871 * 119.99764 * 2 1 3 33 33 H 0.96997 * 117.70689 * 184.30076 * 7 5 3 34 34 H 1.09004 * 109.21504 * 98.17225 * 8 7 5 35 35 H 1.09000 * 109.21585 * 217.50616 * 8 7 5 36 36 H 1.08996 * 109.90694 * 287.34556 * 9 8 7 37 37 H 1.09000 * 109.67912 * 166.63691 * 9 8 7 38 38 H 1.07997 * 119.74545 * 359.97438 * 15 14 11 39 39 H 1.08006 * 119.87383 * 180.27988 * 16 15 14 40 40 H 1.08009 * 120.12998 * 179.74947 * 17 16 15 41 41 H 0.96999 * 120.00141 * 179.97438 * 22 21 19 42 42 H 1.08006 * 120.13201 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6774 1.9580 0.8893 5 6 1.5449 2.1519 -1.2307 6 8 0.3724 2.0516 -1.5240 7 7 2.3362 2.8858 -2.0145 8 6 3.7765 3.0186 -1.8432 9 6 4.1815 2.6954 -0.4017 10 7 3.5105 1.4450 -0.0082 11 16 4.3768 0.0965 0.4087 12 8 5.7110 0.5305 0.6337 13 8 3.6069 -0.5884 1.3871 14 6 4.4262 -0.9502 -1.0079 15 6 3.4365 -1.9026 -1.1978 16 6 3.4596 -2.7289 -2.3105 17 6 4.4739 -2.6196 -3.2343 18 6 5.4867 -1.6608 -3.0490 19 6 6.5340 -1.5398 -3.9911 20 1 7.0562 -0.6008 -4.1004 21 6 6.8940 -2.6368 -4.7819 22 7 6.5487 -3.8456 -4.4198 23 14 7.8677 -2.3752 -6.3545 24 1 9.3155 -2.5514 -6.0753 25 1 7.4362 -3.3647 -7.3742 26 1 7.6253 -1.0017 -6.8640 27 6 5.4499 -0.8233 -1.9185 28 1 -0.3633 -1.0136 0.1697 29 1 -0.3633 0.6538 0.7928 30 1 -0.3633 0.3598 -0.9627 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.9241 3.3615 -2.7526 34 1 4.2833 2.3344 -2.5239 35 1 4.0728 4.0412 -2.0770 36 1 3.8716 3.5034 0.2609 37 1 5.2624 2.5666 -0.3443 38 1 2.6394 -1.9984 -0.4754 39 1 2.6811 -3.4642 -2.4507 40 1 4.4922 -3.2672 -4.0985 41 1 6.7979 -4.6060 -4.9681 42 1 6.2221 -0.0835 -1.7665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619482533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:49 Heat of formation + Delta-G solvation = -91.339837 kcal Electronic energy + Delta-G solvation = -28769.455255 eV Core-core repulsion = 24840.930364 eV Total energy + Delta-G solvation = -3928.524891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.50173 -39.50412 -38.62250 -37.92274 -37.00513 -36.11412 -35.64815 -33.32704 -31.92399 -31.62011 -30.38500 -27.40800 -27.08414 -25.07020 -23.67075 -23.30300 -22.59917 -21.04822 -19.99988 -19.71928 -18.63916 -18.24168 -17.72207 -17.40711 -17.04033 -16.81955 -16.76415 -16.41764 -15.99301 -15.35298 -15.18571 -15.08107 -14.67319 -14.38878 -14.27496 -13.90745 -13.79619 -13.55793 -13.39519 -13.30604 -13.12844 -13.08132 -13.06047 -12.89531 -12.75755 -12.60983 -12.39680 -12.25722 -12.02873 -11.74415 -11.47511 -11.39827 -11.11134 -10.72396 -10.17691 -9.96117 -9.81818 -9.52796 -8.74359 -6.44043 -0.64941 0.38457 0.83569 1.37385 1.43886 1.51236 1.52591 1.83644 2.16967 2.28678 2.53432 2.70254 3.26861 3.36414 3.51356 3.57502 3.86676 3.98715 4.14929 4.26194 4.33346 4.41219 4.52276 4.55998 4.59596 4.79702 4.82117 4.87864 4.91993 5.01179 5.02996 5.17822 5.22201 5.23197 5.32682 5.41325 5.54253 5.56168 5.86666 5.87774 5.92551 6.08317 6.28238 6.51749 6.79841 6.84195 7.17996 8.24706 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014145 B = 0.004287 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.981800 B = 6529.347290 C = 6671.513391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.206 4.206 3 C 0.154 3.846 4 H 0.133 0.867 5 C 0.514 3.486 6 O -0.571 6.571 7 N -0.706 5.706 8 C 0.088 3.912 9 C 0.091 3.909 10 N -0.997 5.997 11 S 2.716 3.284 12 O -0.980 6.980 13 O -0.973 6.973 14 C -0.641 4.641 15 C -0.151 4.151 16 C -0.126 4.126 17 C -0.141 4.141 18 C 0.064 3.936 19 C -0.496 4.496 20 H 0.085 0.915 21 C 0.036 3.964 22 N -0.825 5.825 23 Si 0.982 3.018 24 H -0.263 1.263 25 H -0.268 1.268 26 H -0.254 1.254 27 C -0.137 4.137 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.128 0.872 33 H 0.406 0.594 34 H 0.061 0.939 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.136 0.864 39 H 0.121 0.879 40 H 0.107 0.893 41 H 0.291 0.709 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.238 12.831 3.995 14.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.244 4.244 3 C 0.046 3.954 4 H 0.150 0.850 5 C 0.300 3.700 6 O -0.450 6.450 7 N -0.356 5.356 8 C -0.037 4.037 9 C -0.033 4.033 10 N -0.836 5.836 11 S 2.811 3.189 12 O -0.971 6.971 13 O -0.963 6.963 14 C -0.730 4.730 15 C -0.171 4.171 16 C -0.145 4.145 17 C -0.161 4.161 18 C 0.061 3.939 19 C -0.525 4.525 20 H 0.103 0.897 21 C -0.179 4.179 22 N -0.451 5.451 23 Si 0.802 3.198 24 H -0.188 1.188 25 H -0.192 1.192 26 H -0.178 1.178 27 C -0.158 4.158 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.146 0.854 33 H 0.243 0.757 34 H 0.079 0.921 35 H 0.152 0.848 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.154 0.846 39 H 0.139 0.861 40 H 0.125 0.875 41 H 0.102 0.898 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.279 12.274 4.812 14.201 hybrid contribution 0.350 -0.587 -1.888 2.008 sum -4.929 11.687 2.924 13.017 Atomic orbital electron populations 1.21758 0.92344 1.01909 1.03572 1.23161 1.00641 0.93996 1.06613 1.21227 0.78214 0.98578 0.97387 0.84972 1.20382 0.85840 0.78616 0.85191 1.90680 1.18196 1.62751 1.73415 1.45295 1.09225 1.48966 1.32157 1.22042 0.79395 1.05076 0.97152 1.22280 0.99754 0.85561 0.95684 1.57933 1.14399 1.26154 1.85135 1.01053 0.71860 0.72294 0.73678 1.93489 1.36515 1.81763 1.85284 1.93397 1.70314 1.74243 1.58358 1.30286 1.04965 1.16526 1.21184 1.20608 0.99149 0.97752 0.99633 1.21117 0.98572 0.99375 0.95416 1.21563 0.94008 1.00905 0.99600 1.18019 0.92565 0.91651 0.91645 1.19857 1.15921 0.98790 1.17896 0.89669 1.26784 0.96081 0.93708 1.01354 1.69845 1.38166 1.00182 1.36909 0.85188 0.78345 0.79747 0.76489 1.18783 1.19244 1.17783 1.20817 0.97629 1.03285 0.94025 0.92061 0.91639 0.91497 0.90586 0.85399 0.75719 0.92067 0.84804 0.86278 0.86346 0.84607 0.86126 0.87540 0.89843 0.86560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.08 71.98 0.65 -3.02 16 2 C -0.21 -6.01 3.31 30.60 0.10 -5.91 16 3 C 0.15 3.93 3.18 44.06 0.14 4.07 16 4 H 0.13 2.69 8.14 -2.39 -0.02 2.68 16 5 C 0.51 13.58 7.35 87.79 0.65 14.22 16 6 O -0.57 -18.11 14.29 -3.01 -0.04 -18.16 16 7 N -0.71 -14.47 5.42 -466.76 -2.53 -17.00 16 8 C 0.09 1.46 7.34 86.60 0.64 2.10 16 9 C 0.09 1.66 6.58 86.29 0.57 2.23 16 10 N -1.00 -25.79 3.29 -494.36 -1.63 -27.42 16 11 S 2.72 93.76 5.19 -56.49 -0.29 93.47 16 12 O -0.98 -37.09 15.77 -128.00 -2.02 -39.11 16 13 O -0.97 -35.50 13.68 -128.00 -1.75 -37.25 16 14 C -0.64 -26.75 5.73 22.22 0.13 -26.62 16 15 C -0.15 -6.32 7.32 22.46 0.16 -6.15 16 16 C -0.13 -5.61 10.02 22.21 0.22 -5.39 16 17 C -0.14 -7.10 8.69 22.73 0.20 -6.91 16 18 C 0.06 3.32 5.56 -21.29 -0.12 3.20 16 19 C -0.50 -25.28 9.04 23.46 0.21 -25.06 16 20 H 0.09 4.10 7.91 -2.91 -0.02 4.08 16 21 C 0.04 1.74 5.10 85.26 0.44 2.18 16 22 N -0.83 -41.69 11.10 21.83 0.24 -41.45 16 23 Si 0.98 36.25 29.60 68.60 2.03 38.28 16 24 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 25 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 26 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 27 C -0.14 -6.34 9.26 22.73 0.21 -6.13 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.51 8.12 -2.39 -0.02 1.50 16 30 H 0.07 2.02 5.69 -2.39 -0.01 2.00 16 31 H 0.08 2.51 4.56 -2.39 -0.01 2.50 16 32 H 0.13 3.92 4.69 -4.68 -0.02 3.90 16 33 H 0.41 7.15 8.80 -92.71 -0.82 6.34 16 34 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.12 2.18 6.88 -2.39 -0.02 2.16 16 38 H 0.14 5.04 5.47 -2.91 -0.02 5.02 16 39 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 40 H 0.11 5.57 6.29 -2.91 -0.02 5.55 16 41 H 0.29 13.25 8.30 -92.71 -0.77 12.49 16 42 H 0.12 5.09 7.60 -2.91 -0.02 5.06 16 Total: -1.00 -67.10 340.30 -1.54 -68.64 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: 0.25 Total: 37.20 kcal Atomic # 6 Polarization: -61.40 SS G_CDS: 4.20 Total: -57.20 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -3.91 Total: -85.87 kcal Atomic # 8 Polarization: -90.70 SS G_CDS: -3.81 Total: -94.52 kcal Atomic # 14 Polarization: 36.25 SS G_CDS: 2.03 Total: 38.28 kcal Atomic # 16 Polarization: 93.76 SS G_CDS: -0.29 Total: 93.47 kcal Total: -67.10 -1.54 -68.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619482533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.698 kcal (2) G-P(sol) polarization free energy of solvation -67.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds