Wall clock time and date at job start Tue Mar 31 2020 21:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47392 * 2 1 4 4 H 1.09000 * 109.66530 * 54.69947 * 3 2 1 5 5 C 1.50437 * 109.56982 * 175.00236 * 3 2 1 6 6 O 1.21283 * 118.48437 * 287.08571 * 5 3 2 7 7 N 1.33378 * 123.02438 * 107.11070 * 5 3 2 8 8 C 1.45647 * 124.59224 * 4.58197 * 7 5 3 9 9 C 1.53181 * 110.66125 * 337.67410 * 8 7 5 10 10 N 1.47047 * 109.56523 * 294.40587 * 3 2 1 11 11 S 1.65598 * 121.35517 * 102.93400 * 10 3 2 12 12 O 1.42100 * 106.40583 * 203.53849 * 11 10 3 13 13 O 1.42102 * 106.40262 * 336.46163 * 11 10 3 14 14 C 1.76206 * 107.21727 * 90.00002 * 11 10 3 15 15 C 1.38657 * 119.87490 * 90.00212 * 14 11 10 16 16 C 1.38607 * 120.50276 * 179.97438 * 15 14 11 17 17 C 1.37636 * 120.24791 * 359.97438 * 16 15 14 18 18 C 1.40696 * 119.74345 * 0.02562 * 17 16 15 19 19 C 1.41400 * 120.24294 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99826 * 155.23579 * 19 18 17 21 21 C 1.39945 * 120.00126 * 335.23903 * 19 18 17 22 22 N 1.30821 * 119.99730 * 342.28094 * 21 19 18 23 23 Si 1.86800 * 120.00054 * 162.28660 * 21 19 18 24 24 H 1.48499 * 109.47538 * 89.99691 * 23 21 19 25 25 H 1.48499 * 109.46922 * 209.99910 * 23 21 19 26 26 H 1.48500 * 109.46754 * 329.99688 * 23 21 19 27 27 C 1.37595 * 119.87416 * 269.72531 * 14 11 10 28 28 H 1.09002 * 109.46798 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47165 * 299.99927 * 1 2 3 30 30 H 1.08998 * 109.46816 * 60.00387 * 1 2 3 31 31 H 1.08999 * 109.47074 * 239.99311 * 2 1 3 32 32 H 1.09008 * 109.47184 * 119.99995 * 2 1 3 33 33 H 0.97003 * 117.70302 * 184.29403 * 7 5 3 34 34 H 1.08994 * 109.21613 * 98.16588 * 8 7 5 35 35 H 1.08994 * 109.21683 * 217.50441 * 8 7 5 36 36 H 1.09000 * 109.90795 * 287.34493 * 9 8 7 37 37 H 1.09003 * 109.68762 * 166.64288 * 9 8 7 38 38 H 1.08006 * 119.75018 * 0.02562 * 15 14 11 39 39 H 1.08000 * 119.87485 * 180.02562 * 16 15 14 40 40 H 1.08004 * 120.13245 * 180.02562 * 17 16 15 41 41 H 0.97004 * 119.99863 * 179.97438 * 22 21 19 42 42 H 1.07996 * 120.13198 * 0.02562 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6031 1.9860 0.8377 5 6 3.5393 1.4468 0.1235 6 8 4.0323 1.1650 1.1952 7 7 4.3514 1.7467 -0.8912 8 6 3.9049 2.1956 -2.2028 9 6 2.4571 1.7648 -2.4575 10 7 1.6645 2.0976 -1.2618 11 16 0.4018 3.1665 -1.3351 12 8 -0.0379 3.1761 -2.6863 13 8 -0.4515 2.8551 -0.2423 14 6 1.0568 4.7703 -1.0136 15 6 1.5125 5.5534 -2.0633 16 6 2.0298 6.8171 -1.8253 17 6 2.0959 7.3088 -0.5414 18 6 1.6365 6.5230 0.5314 19 6 1.6999 7.0174 1.8547 20 1 1.0229 6.6382 2.6059 21 6 2.6399 7.9982 2.1909 22 7 3.6695 8.2116 1.4125 23 14 2.4245 9.0025 3.7511 24 1 3.1048 8.3169 4.8791 25 1 3.0198 10.3493 3.5590 26 1 0.9775 9.1397 4.0556 27 6 1.1089 5.2432 0.2775 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 5.3066 1.6639 -0.7440 34 1 3.9734 3.2822 -2.2527 35 1 4.5471 1.7607 -2.9686 36 1 2.4158 0.6909 -2.6390 37 1 2.0616 2.2991 -3.3214 38 1 1.4633 5.1761 -3.0741 39 1 2.3815 7.4186 -2.6505 40 1 2.4990 8.2939 -0.3582 41 1 4.3208 8.8916 1.6454 42 1 0.7497 4.6333 1.0931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619482534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:53 Heat of formation + Delta-G solvation = -89.874162 kcal Electronic energy + Delta-G solvation = -28557.966472 eV Core-core repulsion = 24629.505138 eV Total energy + Delta-G solvation = -3928.461334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.35317 -37.69402 -36.97018 -36.89247 -35.47993 -34.95435 -33.88948 -32.24587 -30.13214 -29.86170 -29.35251 -26.59169 -25.53283 -23.77165 -22.18594 -21.94293 -21.04534 -19.59899 -18.57566 -18.24458 -17.49334 -17.10255 -16.44827 -16.08120 -15.66339 -15.23875 -15.16499 -14.78418 -14.53859 -14.20240 -14.19031 -13.54828 -13.40026 -13.14703 -12.70457 -12.64346 -12.52142 -12.22915 -11.96228 -11.94535 -11.77208 -11.67732 -11.47688 -11.40461 -11.31893 -11.20830 -11.03533 -10.94672 -10.87794 -10.65403 -10.21305 -9.81431 -9.59901 -9.37906 -9.14210 -8.89855 -8.09839 -7.75523 -6.96723 -4.57404 0.78713 2.11501 2.59111 2.63354 2.98873 2.99917 3.05641 3.10834 3.36917 3.81098 4.12448 4.32933 4.39728 4.58556 4.64610 4.90687 4.96381 5.00175 5.18616 5.25833 5.36417 5.37708 5.49736 5.70188 5.73798 5.87960 5.94249 5.96940 6.08901 6.12185 6.31251 6.41934 6.59145 6.70844 6.75954 6.84483 6.99792 7.16060 7.28235 7.31520 7.66537 7.76363 7.89434 8.20469 8.35859 8.62632 8.67122 9.98776 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013040 B = 0.004467 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.769753 B = 6266.450351 C = 6704.114186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.146 3.854 4 H 0.129 0.871 5 C 0.524 3.476 6 O -0.548 6.548 7 N -0.712 5.712 8 C 0.092 3.908 9 C 0.106 3.894 10 N -1.001 6.001 11 S 2.685 3.315 12 O -0.969 6.969 13 O -0.958 6.958 14 C -0.633 4.633 15 C -0.152 4.152 16 C -0.119 4.119 17 C -0.118 4.118 18 C 0.093 3.907 19 C -0.458 4.458 20 H 0.083 0.917 21 C 0.075 3.925 22 N -0.793 5.793 23 Si 0.911 3.089 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.258 1.258 27 C -0.125 4.125 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.399 0.601 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.284 0.716 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.323 -10.665 -7.110 12.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.037 3.963 4 H 0.147 0.853 5 C 0.309 3.691 6 O -0.425 6.425 7 N -0.364 5.364 8 C -0.034 4.034 9 C -0.020 4.020 10 N -0.837 5.837 11 S 2.783 3.217 12 O -0.959 6.959 13 O -0.949 6.949 14 C -0.725 4.725 15 C -0.173 4.173 16 C -0.139 4.139 17 C -0.138 4.138 18 C 0.089 3.911 19 C -0.487 4.487 20 H 0.102 0.898 21 C -0.143 4.143 22 N -0.418 5.418 23 Si 0.735 3.265 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.182 1.182 27 C -0.146 4.146 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.234 0.766 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.095 0.905 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.652 -10.899 -6.793 12.860 hybrid contribution 1.114 1.231 0.711 1.806 sum 1.766 -9.669 -6.082 11.558 Atomic orbital electron populations 1.21780 0.94008 1.01562 1.03228 1.21766 0.97512 0.93662 1.03257 1.21185 0.91121 0.96523 0.87442 0.85339 1.20162 0.89725 0.75842 0.83403 1.90774 1.76208 1.49410 1.26077 1.45216 1.10276 1.68095 1.12795 1.21849 0.96120 1.01127 0.84265 1.21785 0.89821 1.02384 0.87984 1.58239 1.52047 1.59232 1.14203 1.01945 0.72808 0.73645 0.73291 1.93509 1.78946 1.87462 1.36003 1.93549 1.62399 1.84144 1.54805 1.29755 1.20267 1.21092 1.01395 1.20023 1.05253 0.96506 0.95510 1.20794 1.00756 0.95656 0.96664 1.21628 1.01102 0.99956 0.91107 1.17682 0.89771 0.89898 0.93710 1.19634 1.15556 1.18079 0.95456 0.89847 1.25941 0.93475 0.96074 0.98801 1.69774 1.07646 1.27351 1.36983 0.86250 0.80142 0.78978 0.81136 1.19236 1.19951 1.18221 1.20768 1.04203 0.96749 0.92903 0.92353 0.90858 0.93371 0.91278 0.89711 0.76578 0.90364 0.89452 0.89938 0.86969 0.87704 0.88372 0.85783 0.90532 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.66 37.16 0.32 -1.51 16 2 C -0.12 -1.46 5.50 -26.73 -0.15 -1.61 16 3 C 0.15 2.13 2.38 -68.91 -0.16 1.96 16 4 H 0.13 2.05 7.49 -51.93 -0.39 1.67 16 5 C 0.52 8.02 7.10 -11.73 -0.08 7.94 16 6 O -0.55 -10.23 17.80 5.55 0.10 -10.13 16 7 N -0.71 -8.68 5.42 -61.23 -0.33 -9.02 16 8 C 0.09 0.91 7.35 -4.41 -0.03 0.87 16 9 C 0.11 1.12 6.40 -3.53 -0.02 1.10 16 10 N -1.00 -14.22 2.51 -107.61 -0.27 -14.49 16 11 S 2.69 48.03 5.10 -107.50 -0.55 47.48 16 12 O -0.97 -18.21 15.98 -57.17 -0.91 -19.12 16 13 O -0.96 -18.70 14.15 -57.17 -0.81 -19.50 16 14 C -0.63 -13.38 5.97 -39.66 -0.24 -13.61 16 15 C -0.15 -3.14 9.53 -39.29 -0.37 -3.51 16 16 C -0.12 -2.59 10.02 -39.66 -0.40 -2.98 16 17 C -0.12 -2.89 8.70 -38.87 -0.34 -3.23 16 18 C 0.09 2.38 5.57 -106.82 -0.60 1.78 16 19 C -0.46 -11.74 9.05 -37.74 -0.34 -12.08 16 20 H 0.08 2.06 7.91 -52.48 -0.41 1.65 16 21 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 22 N -0.79 -19.51 10.97 55.55 0.61 -18.90 16 23 Si 0.91 18.10 29.59 -169.99 -5.03 13.07 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 26 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 27 C -0.12 -2.95 9.26 -38.87 -0.36 -3.31 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.98 7.91 -51.93 -0.41 0.57 16 30 H 0.05 0.64 6.53 -51.93 -0.34 0.30 16 31 H 0.07 0.70 7.34 -51.93 -0.38 0.32 16 32 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 33 H 0.40 4.31 8.80 -40.82 -0.36 3.95 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.68 7.39 -51.93 -0.38 0.29 16 37 H 0.11 1.12 7.07 -51.93 -0.37 0.75 16 38 H 0.10 1.90 7.60 -52.48 -0.40 1.50 16 39 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.12 3.09 6.18 -52.48 -0.32 2.77 16 41 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 42 H 0.11 2.52 7.60 -52.49 -0.40 2.12 16 LS Contribution 354.20 15.07 5.34 5.34 Total: -1.00 -31.48 354.20 -10.13 -41.62 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -5.41 Total: 10.11 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -2.86 Total: -26.45 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.01 Total: -42.41 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -1.62 Total: -48.75 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 16 Polarization: 48.03 SS G_CDS: -0.55 Total: 47.48 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.48 -10.13 -41.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619482534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.259 kcal (2) G-P(sol) polarization free energy of solvation -31.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds