Wall clock time and date at job start Tue Mar 31 2020 20:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 110.78248 * 2 1 4 4 N 1.34777 * 120.00008 * 303.24287 * 3 2 1 5 5 O 1.21283 * 119.99557 * 123.23973 * 3 2 1 6 6 C 1.55156 * 110.71675 * 236.75921 * 2 1 3 7 7 C 1.55136 * 101.48520 * 205.96971 * 6 2 1 8 8 N 1.47423 * 104.72007 * 37.29868 * 7 6 2 9 9 S 1.65602 * 125.64712 * 155.81856 * 8 7 6 10 10 O 1.42100 * 106.40248 * 156.15535 * 9 8 7 11 11 O 1.42092 * 106.40095 * 23.22847 * 9 8 7 12 12 C 1.76203 * 107.21472 * 269.69166 * 9 8 7 13 13 C 1.38652 * 119.87904 * 90.00085 * 12 9 8 14 14 C 1.38613 * 120.50594 * 179.97438 * 13 12 9 15 15 C 1.37638 * 120.24303 * 0.02562 * 14 13 12 16 16 C 1.40696 * 119.75072 * 0.02562 * 15 14 13 17 17 C 1.41392 * 120.24919 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00262 * 204.38741 * 17 16 15 19 19 C 1.39947 * 119.99728 * 24.38299 * 17 16 15 20 20 N 1.30822 * 120.00133 * 17.86967 * 19 17 16 21 21 Si 1.86803 * 120.00032 * 197.87079 * 19 17 16 22 22 H 1.48506 * 109.46700 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47235 * 119.99812 * 21 19 17 24 24 H 1.48498 * 109.46986 * 240.00336 * 21 19 17 25 25 C 1.37602 * 119.87353 * 270.01906 * 12 9 8 26 26 C 1.47026 * 108.70562 * 335.55108 * 8 7 6 27 27 H 1.09002 * 109.46843 * 296.76101 * 1 2 3 28 28 H 1.08995 * 109.47180 * 56.75732 * 1 2 3 29 29 H 1.08995 * 109.47149 * 176.75972 * 1 2 3 30 30 H 0.96996 * 119.99689 * 359.97438 * 4 3 2 31 31 H 0.96992 * 119.99927 * 179.97438 * 4 3 2 32 32 H 1.08998 * 111.00610 * 324.21405 * 6 2 1 33 33 H 1.09005 * 111.00092 * 88.02625 * 6 2 1 34 34 H 1.09003 * 110.49405 * 278.45831 * 7 6 2 35 35 H 1.08994 * 110.34269 * 156.06120 * 7 6 2 36 36 H 1.08006 * 119.74509 * 0.02562 * 13 12 9 37 37 H 1.07996 * 119.87687 * 179.74165 * 14 13 12 38 38 H 1.08007 * 120.12288 * 179.97438 * 15 14 13 39 39 H 0.97002 * 119.99573 * 180.02562 * 20 19 17 40 40 H 1.07999 * 120.12763 * 359.95932 * 25 12 9 41 41 H 1.08998 * 109.88377 * 120.70001 * 26 8 7 42 42 H 1.09000 * 109.88364 * 241.71503 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0648 1.4090 0.0000 4 7 1.7057 2.2660 -0.9762 5 8 2.8182 1.7716 0.8785 6 6 2.0789 -0.7955 -1.2138 7 6 3.4666 -1.2457 -0.6861 8 7 3.2445 -1.5508 0.7390 9 16 4.1633 -2.5742 1.6614 10 8 3.9856 -2.1666 3.0111 11 8 5.4355 -2.6478 1.0328 12 6 3.4490 -4.1794 1.5283 13 6 3.8664 -5.0401 0.5247 14 6 3.3136 -6.3060 0.4083 15 6 2.3420 -6.7218 1.2900 16 6 1.9098 -5.8566 2.3118 17 6 0.9119 -6.2727 3.2229 18 1 0.3057 -5.5384 3.7325 19 6 0.7096 -7.6363 3.4644 20 7 1.6355 -8.5022 3.1412 21 14 -0.8824 -8.2200 4.2480 22 1 -1.7593 -7.0519 4.5164 23 1 -1.5735 -9.1569 3.3261 24 1 -0.5799 -8.9149 5.5250 25 6 2.4786 -4.5739 2.4207 26 6 2.0760 -0.7912 1.2073 27 1 -0.3633 0.4627 0.9176 28 1 -0.3633 0.5633 -0.8595 29 1 -0.3633 -1.0260 -0.0581 30 1 1.1033 1.9759 -1.6789 31 1 2.0495 3.1730 -0.9760 32 1 1.4451 -1.6536 -1.4375 33 1 2.1843 -0.1520 -2.0872 34 1 4.1947 -0.4415 -0.7929 35 1 3.8031 -2.1362 -1.2168 36 1 4.6286 -4.7222 -0.1713 37 1 3.6433 -6.9666 -0.3798 38 1 1.9123 -7.7084 1.1973 39 1 1.4951 -9.4474 3.3083 40 1 2.1552 -3.9020 3.2019 41 1 1.3129 -1.4758 1.5775 42 1 2.3736 -0.1044 1.9997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619506296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:36 Heat of formation + Delta-G solvation = -123.393502 kcal Electronic energy + Delta-G solvation = -27714.325542 eV Core-core repulsion = 23784.410700 eV Total energy + Delta-G solvation = -3929.914842 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.44015 -39.46182 -38.54410 -38.35265 -36.97941 -35.67851 -35.01782 -33.22242 -31.93011 -31.60330 -30.57178 -27.36599 -27.11617 -24.38587 -23.77963 -23.29464 -22.79959 -20.38847 -20.34090 -19.60696 -18.71654 -18.32243 -17.81396 -17.50590 -17.00976 -16.68305 -16.55598 -16.21409 -15.69568 -15.33813 -15.09886 -14.75218 -14.68001 -14.58156 -14.33132 -13.97189 -13.75983 -13.56025 -13.32886 -13.28747 -13.22513 -13.10643 -13.08113 -12.85677 -12.70572 -12.60098 -12.33210 -12.18560 -12.02632 -11.77782 -11.55724 -11.39588 -11.15163 -10.85857 -10.62255 -10.02686 -9.84413 -9.57473 -8.73577 -6.45778 -0.64000 0.38333 0.82956 1.38307 1.45124 1.53842 1.61759 2.04590 2.18580 2.52957 2.57148 2.75220 3.10352 3.35018 3.51922 3.61620 3.86405 4.11925 4.26906 4.29782 4.33786 4.42557 4.51348 4.68087 4.74646 4.78274 4.83053 4.89396 4.97319 5.01089 5.03806 5.07258 5.17488 5.19288 5.34449 5.37724 5.45091 5.56132 5.87337 5.92687 5.94065 6.09636 6.49002 6.51741 6.79090 6.83734 7.38315 8.24801 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015190 B = 0.003589 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.847998 B = 7800.034367 C = 8622.057040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 C 0.530 3.470 4 N -0.828 5.828 5 O -0.589 6.589 6 C -0.103 4.103 7 C 0.104 3.896 8 N -1.007 6.007 9 S 2.723 3.277 10 O -0.996 6.996 11 O -0.985 6.985 12 C -0.633 4.633 13 C -0.147 4.147 14 C -0.119 4.119 15 C -0.138 4.138 16 C 0.066 3.934 17 C -0.496 4.496 18 H 0.080 0.920 19 C 0.036 3.964 20 N -0.824 5.824 21 Si 0.985 3.015 22 H -0.256 1.256 23 H -0.259 1.259 24 H -0.269 1.269 25 C -0.146 4.146 26 C 0.125 3.875 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.420 0.580 31 H 0.409 0.591 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.116 0.884 39 H 0.292 0.708 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.123 14.141 -14.210 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.092 4.092 3 C 0.314 3.686 4 N -0.392 5.392 5 O -0.469 6.469 6 C -0.141 4.141 7 C -0.021 4.021 8 N -0.847 5.847 9 S 2.820 3.180 10 O -0.987 6.987 11 O -0.975 6.975 12 C -0.723 4.723 13 C -0.168 4.168 14 C -0.139 4.139 15 C -0.158 4.158 16 C 0.062 3.938 17 C -0.525 4.525 18 H 0.098 0.902 19 C -0.179 4.179 20 N -0.450 5.450 21 Si 0.806 3.194 22 H -0.180 1.180 23 H -0.183 1.183 24 H -0.194 1.194 25 C -0.168 4.168 26 C 0.000 4.000 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.098 0.902 30 H 0.252 0.748 31 H 0.241 0.759 32 H 0.127 0.873 33 H 0.141 0.859 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.133 0.867 39 H 0.103 0.897 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.788 14.162 -13.037 20.100 hybrid contribution -0.686 -0.867 0.458 1.197 sum -6.474 13.295 -12.578 19.414 Atomic orbital electron populations 1.21846 0.88420 1.04750 1.04110 1.21799 0.99314 0.91334 0.96786 1.20443 0.79343 0.87748 0.81029 1.43583 1.51530 1.15596 1.28508 1.90765 1.37994 1.79058 1.39082 1.23056 0.94133 1.01108 0.95853 1.22386 0.99416 1.01651 0.78605 1.58312 1.45105 1.58332 1.22916 1.00549 0.72608 0.73018 0.71839 1.93479 1.86691 1.82620 1.35904 1.93469 1.39006 1.87667 1.77395 1.30182 1.13090 1.22240 1.06801 1.20441 1.02366 0.94862 0.99100 1.21141 0.97338 0.95993 0.99379 1.21662 0.99212 1.00371 0.94542 1.18019 0.91979 0.91538 0.92229 1.19893 1.16668 0.93291 1.22659 0.90157 1.26793 1.00535 0.96176 0.94424 1.69829 1.33098 1.04629 1.37401 0.85106 0.77087 0.78961 0.78282 1.17983 1.18336 1.19361 1.20785 0.98097 0.98872 0.99003 1.21859 0.86756 0.94236 0.97194 0.92107 0.88080 0.90163 0.74784 0.75925 0.87305 0.85917 0.91651 0.89159 0.85186 0.85246 0.86653 0.89699 0.87658 0.90310 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 8.40 71.98 0.60 -0.95 16 2 C -0.09 -1.60 0.78 -51.74 -0.04 -1.64 16 3 C 0.53 10.68 6.62 87.66 0.58 11.26 16 4 N -0.83 -7.45 8.66 -173.53 -1.50 -8.96 16 5 O -0.59 -18.87 16.29 -3.04 -0.05 -18.92 16 6 C -0.10 -1.46 6.03 32.07 0.19 -1.27 16 7 C 0.10 2.46 6.80 86.93 0.59 3.05 16 8 N -1.01 -32.47 3.70 -505.99 -1.87 -34.34 16 9 S 2.72 112.80 5.93 -56.49 -0.34 112.46 16 10 O -1.00 -47.58 16.85 -128.00 -2.16 -49.74 16 11 O -0.98 -42.91 16.85 -128.00 -2.16 -45.06 16 12 C -0.63 -28.62 5.97 22.22 0.13 -28.49 16 13 C -0.15 -6.31 9.53 22.46 0.21 -6.09 16 14 C -0.12 -5.26 10.02 22.22 0.22 -5.04 16 15 C -0.14 -6.95 8.70 22.73 0.20 -6.75 16 16 C 0.07 3.49 5.58 -21.29 -0.12 3.37 16 17 C -0.50 -26.16 9.05 23.46 0.21 -25.95 16 18 H 0.08 4.09 7.91 -2.91 -0.02 4.07 16 19 C 0.04 1.76 5.14 85.26 0.44 2.20 16 20 N -0.82 -41.67 10.95 21.83 0.24 -41.43 16 21 Si 0.99 36.74 29.60 68.60 2.03 38.77 16 22 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 23 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 24 H -0.27 -9.76 7.11 99.48 0.71 -9.06 16 25 C -0.15 -7.36 9.26 22.73 0.21 -7.15 16 26 C 0.12 3.63 5.97 86.73 0.52 4.15 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.10 0.43 7.41 -2.39 -0.02 0.41 16 29 H 0.08 0.96 8.10 -2.39 -0.02 0.94 16 30 H 0.42 0.57 8.10 -92.71 -0.75 -0.18 16 31 H 0.41 3.12 8.93 -92.71 -0.83 2.29 16 32 H 0.11 1.34 8.02 -2.39 -0.02 1.32 16 33 H 0.12 0.81 7.95 -2.38 -0.02 0.79 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.13 4.88 7.60 -2.91 -0.02 4.86 16 37 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 38 H 0.12 5.93 6.16 -2.91 -0.02 5.91 16 39 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 40 H 0.11 5.24 7.60 -2.91 -0.02 5.22 16 41 H 0.08 2.22 7.82 -2.39 -0.02 2.20 16 42 H 0.06 2.11 6.88 -2.39 -0.02 2.09 16 Total: -1.00 -78.84 361.25 -2.35 -81.19 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -0.50 Total: 25.32 kcal Atomic # 6 Polarization: -63.25 SS G_CDS: 3.96 Total: -59.30 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -3.13 Total: -84.73 kcal Atomic # 8 Polarization: -109.35 SS G_CDS: -4.36 Total: -113.72 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Atomic # 16 Polarization: 112.80 SS G_CDS: -0.34 Total: 112.46 kcal Total: -78.84 -2.35 -81.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619506296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.205 kcal (2) G-P(sol) polarization free energy of solvation -78.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds