Wall clock time and date at job start Tue Mar 31 2020 21:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47141 * 2 1 4 4 N 1.46500 * 109.47503 * 179.97438 * 3 2 1 5 5 C 1.34775 * 120.00329 * 179.97438 * 4 3 2 6 6 O 1.21584 * 119.99584 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00115 * 179.97438 * 5 4 3 8 8 C 1.39941 * 120.00222 * 175.83400 * 7 5 4 9 9 C 1.38919 * 120.04342 * 215.18880 * 8 7 5 10 10 C 1.38128 * 120.03795 * 180.02562 * 9 8 7 11 11 C 1.38209 * 120.12427 * 359.67965 * 10 9 8 12 12 C 1.38759 * 120.08483 * 0.59666 * 11 10 9 13 13 O 1.35924 * 120.02231 * 179.69589 * 12 11 10 14 14 C 1.34265 * 117.00227 * 245.79244 * 13 12 11 15 15 O 1.20826 * 119.99766 * 5.20311 * 14 13 12 16 16 C 1.50696 * 119.99860 * 185.20545 * 14 13 12 17 17 S 1.81005 * 109.47043 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99836 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00384 * 0.02562 * 18 17 16 20 20 C 1.38802 * 119.99835 * 179.97438 * 18 17 16 21 21 N 1.31635 * 120.00012 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00066 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47146 * 60.00104 * 22 20 18 24 24 H 1.48500 * 109.47358 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46979 * 299.99972 * 22 20 18 26 26 C 1.38627 * 119.95494 * 359.42860 * 12 11 10 27 27 H 1.08996 * 109.46878 * 60.00888 * 1 2 3 28 28 H 1.09002 * 109.47218 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00146 * 1 2 3 30 30 H 1.08995 * 109.47221 * 239.99539 * 2 1 3 31 31 H 1.09007 * 109.47114 * 119.99532 * 2 1 3 32 32 H 1.08995 * 109.47440 * 59.99673 * 3 2 1 33 33 H 1.09007 * 109.46735 * 299.99764 * 3 2 1 34 34 H 0.97007 * 119.99746 * 359.97438 * 4 3 2 35 35 H 0.97006 * 120.00067 * 355.83886 * 7 5 4 36 36 H 1.07993 * 119.98186 * 0.02562 * 9 8 7 37 37 H 1.08005 * 119.93504 * 179.97438 * 10 9 8 38 38 H 1.08008 * 119.95715 * 180.31785 * 11 10 9 39 39 H 1.08999 * 109.47505 * 300.00114 * 16 14 13 40 40 H 1.09005 * 109.47174 * 59.99914 * 16 14 13 41 41 H 0.96996 * 120.00099 * 179.97438 * 21 20 18 42 42 H 1.08006 * 120.05969 * 180.25442 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1788 2.6098 0.0002 6 8 3.5708 3.6627 -0.0002 7 7 5.5266 2.6098 0.0013 8 6 6.2264 3.8184 -0.0872 9 6 7.4258 3.8782 -0.7855 10 6 8.1167 5.0711 -0.8723 11 6 7.6138 6.2093 -0.2708 12 6 6.4191 6.1542 0.4329 13 8 5.9288 7.2729 1.0291 14 6 5.8713 7.2734 2.3706 15 8 6.3321 6.3475 2.9953 16 6 5.2320 8.4287 3.0969 17 16 5.3089 8.1363 4.8815 18 6 4.5143 9.5966 5.4653 19 1 4.1557 10.3340 4.7625 20 6 4.3483 9.7986 6.8285 21 7 4.7850 8.8996 7.6851 22 14 3.5053 11.3464 7.4474 23 1 2.1245 11.4087 6.9048 24 1 3.4539 11.3224 8.9313 25 1 4.2680 12.5388 6.9982 26 6 5.7231 4.9587 0.5226 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 3.9900 0.6025 0.0013 35 1 6.0116 1.7720 0.0633 36 1 7.8183 2.9914 -1.2607 37 1 9.0493 5.1155 -1.4152 38 1 8.1537 7.1418 -0.3447 39 1 5.7643 9.3488 2.8558 40 1 4.1904 8.5201 2.7886 41 1 4.6693 9.0409 8.6377 42 1 4.7910 4.9148 1.0664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729212023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:58 Heat of formation + Delta-G solvation = -80.221918 kcal Electronic energy + Delta-G solvation = -25587.631412 eV Core-core repulsion = 21659.588631 eV Total energy + Delta-G solvation = -3928.042782 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.19785 -40.49620 -38.52421 -36.64784 -36.08362 -34.71184 -32.95496 -32.47001 -30.76121 -29.78492 -29.10316 -26.45014 -25.55657 -23.65727 -22.96895 -22.02608 -21.09264 -20.91965 -18.72768 -18.27162 -17.87512 -16.82638 -16.50523 -16.39112 -16.12303 -15.98546 -15.29546 -15.09628 -14.83115 -14.82486 -14.29661 -14.18370 -13.73116 -13.35299 -13.26797 -12.94782 -12.76748 -12.62662 -12.53899 -12.43960 -11.94444 -11.79227 -11.56546 -11.34523 -11.09533 -11.07311 -11.04033 -10.81311 -10.50208 -10.26630 -10.00439 -9.91044 -9.43783 -9.09180 -8.75340 -8.35917 -8.24089 -6.59213 -6.25694 -3.98522 1.04454 1.28019 2.27248 2.58944 2.68920 2.90160 3.23717 3.25365 3.28865 3.48943 3.81350 3.82885 4.16365 4.39950 4.54482 4.78470 4.80607 4.87362 5.02728 5.10040 5.13684 5.20606 5.22329 5.31066 5.37843 5.40535 5.50019 5.59259 5.69713 5.76632 5.78021 5.83674 6.03694 6.08486 6.09771 6.22266 6.26137 6.41028 6.59615 6.67205 7.01226 7.56888 7.59212 8.21618 8.24523 8.31899 9.19580 10.81791 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009781 B = 0.002604 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.993052 B =10749.442489 C =13065.473422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.134 3.866 4 N -0.743 5.743 5 C 0.701 3.299 6 O -0.566 6.566 7 N -0.684 5.684 8 C 0.176 3.824 9 C -0.152 4.152 10 C -0.087 4.087 11 C -0.136 4.136 12 C 0.113 3.887 13 O -0.297 6.297 14 C 0.477 3.523 15 O -0.468 6.468 16 C -0.127 4.127 17 S -0.056 6.056 18 C -0.536 4.536 19 H 0.076 0.924 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.922 3.078 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.273 1.273 26 C -0.124 4.124 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.397 0.603 35 H 0.407 0.593 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.270 0.730 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.512 -18.148 -20.171 27.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C 0.010 3.990 4 N -0.398 5.398 5 C 0.401 3.599 6 O -0.441 6.441 7 N -0.332 5.332 8 C 0.081 3.919 9 C -0.172 4.172 10 C -0.106 4.106 11 C -0.155 4.155 12 C 0.070 3.930 13 O -0.213 6.213 14 C 0.319 3.681 15 O -0.351 6.351 16 C -0.274 4.274 17 S 0.170 5.830 18 C -0.684 4.684 19 H 0.095 0.905 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.748 3.252 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.198 1.198 26 C -0.145 4.145 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.230 0.770 35 H 0.243 0.757 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.080 0.920 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.474 -18.450 -19.197 26.630 hybrid contribution -0.585 1.057 -0.244 1.232 sum -0.110 -17.393 -19.441 26.086 Atomic orbital electron populations 1.21677 0.94302 1.02231 1.02617 1.21736 0.97188 0.95680 1.02691 1.21344 0.77535 0.97182 1.02922 1.45106 1.07644 1.06800 1.80284 1.15930 0.81299 0.84649 0.77976 1.90990 1.67366 1.29910 1.55859 1.42485 1.05054 1.08359 1.77305 1.17151 0.92564 0.85241 0.96924 1.20854 0.96081 0.99150 1.01160 1.20715 0.99499 0.91267 0.99077 1.21069 0.93950 0.99778 1.00751 1.18401 0.92946 0.85641 0.95981 1.84657 1.75463 1.38133 1.23090 1.23724 0.76685 0.88336 0.79358 1.90692 1.41823 1.36139 1.66432 1.23325 1.03599 0.96812 1.03703 1.85429 1.78217 1.30497 0.88814 1.22807 1.44592 1.06337 0.94678 0.90542 1.25006 0.95325 0.97615 0.95564 1.70004 1.43572 1.34029 1.02690 0.86165 0.79753 0.81651 0.77614 1.19815 1.20790 1.19812 1.21446 1.01627 0.91356 1.00041 0.92264 0.92123 0.92081 0.91369 0.91201 0.91123 0.91334 0.76952 0.75711 0.85409 0.84770 0.84892 0.87571 0.87558 0.92020 0.83546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.13 -0.69 6.05 -26.73 -0.16 -0.85 16 3 C 0.13 1.08 5.67 -4.04 -0.02 1.06 16 4 N -0.74 -6.12 5.56 -65.23 -0.36 -6.48 16 5 C 0.70 8.71 8.40 -86.92 -0.73 7.98 16 6 O -0.57 -9.76 13.79 5.29 0.07 -9.68 16 7 N -0.68 -7.12 5.34 -14.24 -0.08 -7.20 16 8 C 0.18 2.32 6.29 -83.71 -0.53 1.80 16 9 C -0.15 -1.57 9.96 -39.37 -0.39 -1.97 16 10 C -0.09 -0.92 10.03 -39.63 -0.40 -1.32 16 11 C -0.14 -1.83 9.98 -39.40 -0.39 -2.22 16 12 C 0.11 1.91 5.36 -39.25 -0.21 1.70 16 13 O -0.30 -5.50 10.05 -23.62 -0.24 -5.73 16 14 C 0.48 9.95 7.73 36.00 0.28 10.23 16 15 O -0.47 -10.97 15.15 -18.75 -0.28 -11.25 16 16 C -0.13 -2.70 6.27 36.00 0.23 -2.48 16 17 S -0.06 -1.53 20.58 -107.50 -2.21 -3.74 16 18 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 19 H 0.08 2.05 7.80 -52.49 -0.41 1.64 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 22 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 C -0.12 -2.10 7.78 -39.25 -0.31 -2.41 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.33 8.14 -51.92 -0.42 -0.10 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.40 1.86 8.49 -40.82 -0.35 1.51 16 35 H 0.41 2.52 8.84 -40.82 -0.36 2.16 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 39 H 0.11 2.06 8.14 -51.92 -0.42 1.64 16 40 H 0.11 2.12 8.14 -51.91 -0.42 1.70 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.15 2.89 6.24 -52.48 -0.33 2.56 16 LS Contribution 380.14 15.07 5.73 5.73 Total: -1.00 -36.94 380.14 -9.38 -46.32 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.65 Total: 2.77 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.07 Total: -1.81 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.30 Total: -39.00 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.45 Total: -26.67 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.94 -9.38 -46.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729212023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.898 kcal (2) G-P(sol) polarization free energy of solvation -36.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds