Wall clock time and date at job start Tue Mar 31 2020 21:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47141 * 2 1 4 4 N 1.46500 * 109.47503 * 179.97438 * 3 2 1 5 5 C 1.34775 * 120.00329 * 179.97438 * 4 3 2 6 6 O 1.21584 * 119.99584 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00115 * 179.97438 * 5 4 3 8 8 C 1.39941 * 120.00222 * 175.83400 * 7 5 4 9 9 C 1.38919 * 120.04342 * 215.18880 * 8 7 5 10 10 C 1.38128 * 120.03795 * 180.02562 * 9 8 7 11 11 C 1.38209 * 120.12427 * 359.67965 * 10 9 8 12 12 C 1.38759 * 120.08483 * 0.59666 * 11 10 9 13 13 O 1.35924 * 120.02231 * 179.69589 * 12 11 10 14 14 C 1.34265 * 117.00227 * 245.79244 * 13 12 11 15 15 O 1.20826 * 119.99766 * 5.20311 * 14 13 12 16 16 C 1.50696 * 119.99860 * 185.20545 * 14 13 12 17 17 S 1.81005 * 109.47043 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99836 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00384 * 0.02562 * 18 17 16 20 20 C 1.38802 * 119.99835 * 179.97438 * 18 17 16 21 21 N 1.31635 * 120.00012 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00066 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47146 * 60.00104 * 22 20 18 24 24 H 1.48500 * 109.47358 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46979 * 299.99972 * 22 20 18 26 26 C 1.38627 * 119.95494 * 359.42860 * 12 11 10 27 27 H 1.08996 * 109.46878 * 60.00888 * 1 2 3 28 28 H 1.09002 * 109.47218 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00146 * 1 2 3 30 30 H 1.08995 * 109.47221 * 239.99539 * 2 1 3 31 31 H 1.09007 * 109.47114 * 119.99532 * 2 1 3 32 32 H 1.08995 * 109.47440 * 59.99673 * 3 2 1 33 33 H 1.09007 * 109.46735 * 299.99764 * 3 2 1 34 34 H 0.97007 * 119.99746 * 359.97438 * 4 3 2 35 35 H 0.97006 * 120.00067 * 355.83886 * 7 5 4 36 36 H 1.07993 * 119.98186 * 0.02562 * 9 8 7 37 37 H 1.08005 * 119.93504 * 179.97438 * 10 9 8 38 38 H 1.08008 * 119.95715 * 180.31785 * 11 10 9 39 39 H 1.08999 * 109.47505 * 300.00114 * 16 14 13 40 40 H 1.09005 * 109.47174 * 59.99914 * 16 14 13 41 41 H 0.96996 * 120.00099 * 179.97438 * 21 20 18 42 42 H 1.08006 * 120.05969 * 180.25442 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1788 2.6098 0.0002 6 8 3.5708 3.6627 -0.0002 7 7 5.5266 2.6098 0.0013 8 6 6.2264 3.8184 -0.0872 9 6 7.4258 3.8782 -0.7855 10 6 8.1167 5.0711 -0.8723 11 6 7.6138 6.2093 -0.2708 12 6 6.4191 6.1542 0.4329 13 8 5.9288 7.2729 1.0291 14 6 5.8713 7.2734 2.3706 15 8 6.3321 6.3475 2.9953 16 6 5.2320 8.4287 3.0969 17 16 5.3089 8.1363 4.8815 18 6 4.5143 9.5966 5.4653 19 1 4.1557 10.3340 4.7625 20 6 4.3483 9.7986 6.8285 21 7 4.7850 8.8996 7.6851 22 14 3.5053 11.3464 7.4474 23 1 2.1245 11.4087 6.9048 24 1 3.4539 11.3224 8.9313 25 1 4.2680 12.5388 6.9982 26 6 5.7231 4.9587 0.5226 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 3.9900 0.6025 0.0013 35 1 6.0116 1.7720 0.0633 36 1 7.8183 2.9914 -1.2607 37 1 9.0493 5.1155 -1.4152 38 1 8.1537 7.1418 -0.3447 39 1 5.7643 9.3488 2.8558 40 1 4.1904 8.5201 2.7886 41 1 4.6693 9.0409 8.6377 42 1 4.7910 4.9148 1.0664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729212023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:57 Heat of formation + Delta-G solvation = -105.391508 kcal Electronic energy + Delta-G solvation = -25588.722848 eV Core-core repulsion = 21659.588631 eV Total energy + Delta-G solvation = -3929.134217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.50593 -41.61592 -39.64544 -38.05352 -36.91408 -35.76116 -34.63852 -33.61311 -32.12146 -30.97124 -30.33125 -27.74771 -27.12547 -24.89587 -23.95651 -22.62335 -22.27201 -22.02198 -20.07325 -19.69322 -19.35145 -18.22218 -17.78862 -17.43772 -17.29724 -16.97228 -16.91786 -16.33476 -16.08045 -15.98392 -15.78127 -15.36757 -14.86734 -14.67939 -14.53952 -14.15441 -13.89297 -13.80670 -13.48896 -13.28366 -13.23370 -12.93415 -12.89014 -12.79021 -12.69428 -12.36572 -12.06520 -11.86073 -11.82895 -11.78403 -11.52067 -11.24066 -11.16891 -10.45089 -10.28515 -9.84750 -9.20919 -8.78563 -8.39819 -6.20837 -0.05675 0.23837 0.95778 1.01806 1.39464 1.43783 1.44060 1.52897 1.81452 1.93537 2.21512 2.73174 2.95047 3.06200 3.23240 3.66498 3.87064 3.87899 4.04878 4.06659 4.09387 4.11974 4.31779 4.33462 4.35820 4.47024 4.63400 4.67147 4.72398 4.81884 5.08983 5.12722 5.18010 5.22242 5.26469 5.27016 5.36339 5.38343 5.40862 5.44237 5.83794 5.89710 6.15547 6.65541 6.87902 7.01259 7.35602 8.69452 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009781 B = 0.002604 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.993052 B =10749.442489 C =13065.473422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C 0.132 3.868 4 N -0.722 5.722 5 C 0.692 3.308 6 O -0.621 6.621 7 N -0.669 5.669 8 C 0.166 3.834 9 C -0.129 4.129 10 C -0.074 4.074 11 C -0.140 4.140 12 C 0.067 3.933 13 O -0.292 6.292 14 C 0.483 3.517 15 O -0.501 6.501 16 C -0.106 4.106 17 S -0.133 6.133 18 C -0.550 4.550 19 H 0.087 0.913 20 C 0.016 3.984 21 N -0.910 5.910 22 Si 1.002 2.998 23 H -0.263 1.263 24 H -0.276 1.276 25 H -0.260 1.260 26 C -0.155 4.155 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.417 0.583 35 H 0.430 0.570 36 H 0.177 0.823 37 H 0.182 0.818 38 H 0.149 0.851 39 H 0.130 0.870 40 H 0.120 0.880 41 H 0.273 0.727 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 -19.096 -22.433 29.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C 0.008 3.992 4 N -0.379 5.379 5 C 0.392 3.608 6 O -0.501 6.501 7 N -0.319 5.319 8 C 0.070 3.930 9 C -0.150 4.150 10 C -0.092 4.092 11 C -0.159 4.159 12 C 0.025 3.975 13 O -0.207 6.207 14 C 0.326 3.674 15 O -0.387 6.387 16 C -0.254 4.254 17 S 0.094 5.906 18 C -0.698 4.698 19 H 0.105 0.895 20 C -0.189 4.189 21 N -0.546 5.546 22 Si 0.823 3.177 23 H -0.188 1.188 24 H -0.201 1.201 25 H -0.184 1.184 26 C -0.176 4.176 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.255 0.745 35 H 0.269 0.731 36 H 0.195 0.805 37 H 0.200 0.800 38 H 0.167 0.833 39 H 0.148 0.852 40 H 0.138 0.862 41 H 0.082 0.918 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.796 -19.472 -21.490 29.055 hybrid contribution -0.934 1.209 0.283 1.554 sum 0.862 -18.263 -21.207 28.000 Atomic orbital electron populations 1.21706 0.94302 1.02948 1.02089 1.21674 0.97038 0.93316 1.04017 1.21391 0.77361 0.99199 1.01243 1.44953 1.07715 1.06509 1.78691 1.16264 0.81912 0.84847 0.77771 1.90964 1.68611 1.32227 1.58267 1.42295 1.04405 1.08634 1.76545 1.17398 0.93688 0.84924 0.96983 1.21405 0.93912 1.00942 0.98693 1.21317 1.00512 0.89883 0.97452 1.21409 0.92508 1.01858 1.00115 1.18854 0.95244 0.85169 0.98213 1.84610 1.75489 1.39276 1.21360 1.23527 0.75983 0.87499 0.80381 1.90662 1.43393 1.37182 1.67428 1.23116 1.04966 0.98059 0.99298 1.85536 1.78681 1.31838 0.94515 1.23165 1.44770 1.06371 0.95470 0.89514 1.26154 0.95777 1.01361 0.95625 1.70160 1.44927 1.36381 1.03131 0.84954 0.78730 0.76943 0.77076 1.18763 1.20143 1.18444 1.21302 1.00919 0.93446 1.01922 0.92424 0.90703 0.93103 0.89478 0.90286 0.93592 0.92445 0.74506 0.73055 0.80544 0.80027 0.83300 0.85213 0.86209 0.91753 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.12 -1.09 6.05 30.59 0.19 -0.91 16 3 C 0.13 2.20 5.67 86.38 0.49 2.69 16 4 N -0.72 -11.59 5.56 -478.54 -2.66 -14.25 16 5 C 0.69 17.61 8.40 179.06 1.50 19.11 16 6 O -0.62 -23.08 13.79 -3.98 -0.05 -23.13 16 7 N -0.67 -13.27 5.34 -317.24 -1.69 -14.97 16 8 C 0.17 4.23 6.29 38.13 0.24 4.47 16 9 C -0.13 -2.18 9.96 22.41 0.22 -1.95 16 10 C -0.07 -1.25 10.03 22.24 0.22 -1.03 16 11 C -0.14 -3.52 9.98 22.39 0.22 -3.30 16 12 C 0.07 2.33 5.36 22.49 0.12 2.45 16 13 O -0.29 -11.25 10.05 4.53 0.05 -11.21 16 14 C 0.48 21.09 7.73 71.23 0.55 21.64 16 15 O -0.50 -24.84 15.15 21.96 0.33 -24.51 16 16 C -0.11 -4.67 6.27 71.23 0.45 -4.22 16 17 S -0.13 -7.53 20.58 -56.49 -1.16 -8.70 16 18 C -0.55 -31.85 9.50 67.95 0.65 -31.21 16 19 H 0.09 4.66 7.80 -2.91 -0.02 4.64 16 20 C 0.02 0.91 5.49 84.86 0.47 1.38 16 21 N -0.91 -55.97 13.22 21.65 0.29 -55.68 16 22 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 23 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 26 C -0.15 -5.52 7.78 22.49 0.17 -5.35 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.42 3.10 8.49 -92.70 -0.79 2.31 16 35 H 0.43 4.23 8.84 -92.70 -0.82 3.41 16 36 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 37 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 39 H 0.13 5.05 8.14 -2.40 -0.02 5.04 16 40 H 0.12 4.91 8.14 -2.39 -0.02 4.89 16 41 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 42 H 0.10 4.58 6.24 -2.91 -0.02 4.56 16 Total: -1.00 -87.48 380.14 2.78 -84.69 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -0.54 Total: 18.72 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 6.21 Total: 3.05 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -4.07 Total: -84.90 kcal Atomic # 8 Polarization: -59.17 SS G_CDS: 0.32 Total: -58.84 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -7.53 SS G_CDS: -1.16 Total: -8.70 kcal Total: -87.48 2.78 -84.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729212023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.700 kcal (2) G-P(sol) polarization free energy of solvation -87.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds