Wall clock time and date at job start Tue Mar 31 2020 20:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29371 * 124.67098 * 2 1 4 4 C 1.30933 * 117.50041 * 180.26402 * 3 2 1 5 5 C 1.37124 * 113.83862 * 359.97438 * 4 3 2 6 6 C 1.41656 * 126.18990 * 179.97438 * 5 4 3 7 7 C 1.35680 * 119.99778 * 131.05726 * 6 5 4 8 8 C 1.41289 * 120.00440 * 346.60736 * 7 6 5 9 9 O 1.21718 * 119.99604 * 353.28240 * 8 7 6 10 10 O 1.34996 * 120.00560 * 173.28175 * 8 7 6 11 11 C 1.42895 * 117.00084 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47627 * 30.00177 * 11 10 8 13 13 C 1.52995 * 109.47103 * 270.00017 * 11 10 8 14 14 C 1.50704 * 109.47009 * 149.99966 * 11 10 8 15 15 O 1.21286 * 119.99928 * 14.90727 * 14 11 10 16 16 N 1.34774 * 119.99908 * 194.90428 * 14 11 10 17 17 C 1.46498 * 120.00357 * 4.99765 * 16 14 11 18 18 C 1.46505 * 119.99805 * 184.99751 * 16 14 11 19 19 C 1.50701 * 109.47323 * 90.00244 * 18 16 14 20 20 H 1.07998 * 119.99376 * 359.97438 * 19 18 16 21 21 C 1.37869 * 120.00242 * 179.97438 * 19 18 16 22 22 N 1.31514 * 120.00409 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99865 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47010 * 90.00153 * 23 21 19 25 25 H 1.48496 * 109.47113 * 210.00116 * 23 21 19 26 26 H 1.48497 * 109.46949 * 329.99973 * 23 21 19 27 27 S 1.70919 * 124.67483 * 180.29052 * 2 1 3 28 28 H 1.08993 * 109.47206 * 269.70254 * 1 2 3 29 29 H 1.09004 * 109.46743 * 29.70901 * 1 2 3 30 30 H 1.09005 * 109.46492 * 149.70609 * 1 2 3 31 31 H 1.07996 * 123.08346 * 179.97438 * 4 3 2 32 32 H 1.07994 * 119.99878 * 311.05709 * 6 5 4 33 33 H 1.08003 * 119.99897 * 166.59826 * 7 6 5 34 34 H 1.09000 * 109.47411 * 55.23556 * 13 11 10 35 35 H 1.09002 * 109.47568 * 175.23723 * 13 11 10 36 36 H 1.09010 * 109.47311 * 295.23201 * 13 11 10 37 37 H 1.08997 * 109.47236 * 92.27473 * 17 16 14 38 38 H 1.08992 * 109.47498 * 212.27611 * 17 16 14 39 39 H 1.09002 * 109.46774 * 332.28060 * 17 16 14 40 40 H 1.09004 * 109.46772 * 210.00024 * 18 16 14 41 41 H 1.08995 * 109.47037 * 329.99666 * 18 16 14 42 42 H 0.96997 * 120.00342 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2429 1.0640 0.0000 4 6 3.5420 0.9006 -0.0054 5 6 3.9353 -0.4131 -0.0097 6 6 5.2704 -0.8864 -0.0164 7 6 5.6557 -1.8423 0.8661 8 6 4.8282 -2.1639 1.9652 9 8 3.8315 -1.5026 2.1906 10 8 5.1430 -3.2046 2.7655 11 6 4.2621 -3.4722 3.8583 12 1 3.2496 -3.1688 3.5917 13 6 4.7224 -2.6875 5.0884 14 6 4.2794 -4.9470 4.1679 15 8 5.1576 -5.6512 3.7163 16 7 3.3190 -5.4834 4.9465 17 6 2.1985 -4.6568 5.4020 18 6 3.3955 -6.8933 5.3375 19 6 4.1595 -7.0152 6.6307 20 1 4.5495 -6.1310 7.1129 21 6 4.3607 -8.2555 7.1983 22 7 5.0279 -8.3620 8.3266 23 14 3.6855 -9.7847 6.3646 24 1 4.7004 -10.3252 5.4250 25 1 3.3669 -10.8087 7.3918 26 1 2.4524 -9.4359 5.6143 27 16 2.4794 -1.4056 -0.0071 28 1 -0.3633 -0.0053 1.0276 29 1 -0.3633 0.8926 -0.5093 30 1 -0.3632 -0.8874 -0.5184 31 1 4.2399 1.7248 -0.0062 32 1 5.9816 -0.4864 -0.7239 33 1 6.5948 -2.3576 0.7282 34 1 4.7911 -1.6286 4.8391 35 1 4.0041 -2.8245 5.8966 36 1 5.7001 -3.0502 5.4059 37 1 1.3718 -4.7450 4.6972 38 1 1.8744 -4.9945 6.3863 39 1 2.5158 -3.6156 5.4613 40 1 2.3884 -7.2882 5.4719 41 1 3.9066 -7.4590 4.5587 42 1 5.1691 -9.2345 8.7260 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732867707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:33 Heat of formation + Delta-G solvation = -35.445256 kcal Electronic energy + Delta-G solvation = -26758.631476 eV Core-core repulsion = 22832.530356 eV Total energy + Delta-G solvation = -3926.101120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.97736 -39.83104 -39.08727 -36.89471 -35.02413 -34.69289 -32.79149 -31.99656 -31.48650 -28.59851 -28.30841 -26.21690 -25.27890 -24.29431 -23.53258 -21.93086 -20.65292 -19.75015 -18.85748 -18.23497 -17.71586 -16.99974 -16.72064 -16.31117 -16.03726 -15.44201 -15.19991 -14.87901 -14.66185 -14.31541 -14.21858 -13.88807 -13.61112 -13.39326 -13.12151 -12.89614 -12.83596 -12.44929 -12.40531 -12.28737 -12.23967 -11.93988 -11.87015 -11.52329 -11.43413 -10.99634 -10.88653 -10.71168 -10.53868 -10.26780 -10.18315 -9.78428 -9.58188 -9.05707 -8.91453 -8.63497 -8.62290 -7.80164 -6.12152 -4.11757 -0.21310 0.91881 1.29012 1.60227 2.53332 2.63331 2.89462 3.15307 3.27485 3.33460 3.35430 3.84532 3.92320 4.36779 4.55058 4.70141 4.75483 4.76748 4.97055 5.00182 5.09516 5.10027 5.11931 5.15557 5.21316 5.42336 5.51648 5.57965 5.65578 5.71377 5.78171 5.82146 5.97879 6.06053 6.23769 6.39792 6.63794 6.88793 7.22614 7.51073 7.55586 7.68735 8.09953 8.41854 8.80465 8.91063 9.47509 11.01030 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.020621 B = 0.002648 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.510483 B =10570.469889 C =11058.238949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.034 3.966 3 N -0.482 5.482 4 C 0.077 3.923 5 C -0.231 4.231 6 C 0.031 3.969 7 C -0.190 4.190 8 C 0.485 3.515 9 O -0.502 6.502 10 O -0.318 6.318 11 C 0.072 3.928 12 H 0.101 0.899 13 C -0.165 4.165 14 C 0.513 3.487 15 O -0.520 6.520 16 N -0.592 5.592 17 C 0.073 3.927 18 C 0.216 3.784 19 C -0.532 4.532 20 H 0.075 0.925 21 C 0.073 3.927 22 N -0.896 5.896 23 Si 0.876 3.124 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.266 1.266 27 S 0.204 5.796 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.177 0.823 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.033 0.967 41 H 0.039 0.961 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.441 18.330 -18.372 26.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.240 4.240 3 N -0.196 5.196 4 C -0.079 4.079 5 C -0.353 4.353 6 C 0.011 3.989 7 C -0.213 4.213 8 C 0.332 3.668 9 O -0.393 6.393 10 O -0.233 6.233 11 C 0.013 3.987 12 H 0.118 0.882 13 C -0.222 4.222 14 C 0.297 3.703 15 O -0.396 6.396 16 N -0.325 5.325 17 C -0.071 4.071 18 C 0.096 3.904 19 C -0.571 4.571 20 H 0.093 0.907 21 C -0.129 4.129 22 N -0.534 5.534 23 Si 0.703 3.297 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.190 1.190 27 S 0.463 5.537 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.194 0.806 32 H 0.173 0.827 33 H 0.171 0.829 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.816 17.377 -18.382 26.197 hybrid contribution 0.402 -0.061 0.090 0.416 sum -6.414 17.316 -18.292 25.992 Atomic orbital electron populations 1.20462 0.85332 1.04072 1.04062 1.27193 1.01937 0.91576 1.03264 1.65932 1.05166 1.31484 1.17050 1.22345 0.90980 0.94524 1.00098 1.23743 0.98436 0.97303 1.15795 1.20701 0.91859 0.91153 0.95199 1.21600 1.03062 1.01595 0.95025 1.20101 0.84098 0.78831 0.83750 1.90985 1.26630 1.49901 1.71793 1.86352 1.51337 1.47217 1.38429 1.22184 0.95050 0.95045 0.86415 0.88175 1.22192 1.03968 0.99769 0.96273 1.19823 0.82640 0.87870 0.79928 1.90692 1.35575 1.61808 1.51506 1.47732 1.22653 1.13025 1.49107 1.21879 0.89169 0.95024 1.01041 1.19724 0.97477 0.76461 0.96737 1.21316 1.35229 0.95112 1.05426 0.90651 1.24847 0.94603 0.98777 0.94698 1.69890 1.40501 1.24562 1.18471 0.86847 0.80062 0.83214 0.79571 1.19823 1.21014 1.19027 1.83884 0.95896 1.10791 1.63085 0.89409 0.89320 0.90161 0.80602 0.82682 0.82856 0.91359 0.89673 0.90591 0.93272 0.90093 0.91712 0.94876 0.94298 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.46 36.01 0.38 -0.17 16 2 C 0.03 0.35 7.37 -13.31 -0.10 0.25 16 3 N -0.48 -5.60 10.50 -11.17 -0.12 -5.72 16 4 C 0.08 0.79 11.38 -18.34 -0.21 0.58 16 5 C -0.23 -2.35 4.36 -38.68 -0.17 -2.51 16 6 C 0.03 0.25 9.91 -39.19 -0.39 -0.14 16 7 C -0.19 -1.91 9.95 -39.34 -0.39 -2.30 16 8 C 0.48 6.67 7.23 31.89 0.23 6.90 16 9 O -0.50 -7.30 11.53 -19.43 -0.22 -7.52 16 10 O -0.32 -5.27 9.33 -47.94 -0.45 -5.72 16 11 C 0.07 1.20 2.08 -27.88 -0.06 1.15 16 12 H 0.10 1.51 6.22 -51.93 -0.32 1.18 16 13 C -0.16 -2.44 9.24 37.16 0.34 -2.10 16 14 C 0.51 10.84 6.96 -10.98 -0.08 10.76 16 15 O -0.52 -13.22 16.12 -13.90 -0.22 -13.44 16 16 N -0.59 -12.26 2.86 -182.95 -0.52 -12.78 16 17 C 0.07 1.11 9.98 59.85 0.60 1.71 16 18 C 0.22 5.27 4.28 -5.19 -0.02 5.24 16 19 C -0.53 -15.15 9.94 -34.44 -0.34 -15.49 16 20 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 21 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 22 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 23 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 27 S 0.20 2.17 20.30 -107.50 -2.18 -0.01 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.15 1.23 8.06 -52.48 -0.42 0.80 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.17 6.19 -51.93 -0.32 0.85 16 36 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.26 8.09 -51.93 -0.42 0.84 16 39 H 0.06 0.85 4.49 -51.93 -0.23 0.61 16 40 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 41 H 0.04 1.01 6.79 -51.93 -0.35 0.66 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 369.71 15.07 5.57 5.57 Total: -1.00 -36.97 369.71 -7.76 -44.73 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -5.42 Total: -1.09 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -0.30 Total: 5.90 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.13 Total: -45.14 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.90 Total: -26.68 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.18 Total: -0.01 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.97 -7.76 -44.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732867707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.283 kcal (2) G-P(sol) polarization free energy of solvation -36.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds