Wall clock time and date at job start Tue Mar 31 2020 21:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47311 * 2 1 4 4 C 1.52999 * 109.47043 * 240.00271 * 2 1 3 5 5 O 1.45199 * 109.47305 * 120.00519 * 2 1 3 6 6 C 1.34635 * 117.00133 * 59.99915 * 5 2 1 7 7 O 1.21515 * 120.00085 * 359.97438 * 6 5 2 8 8 N 1.34775 * 120.00007 * 180.02562 * 6 5 2 9 9 N 1.40096 * 120.00243 * 359.97438 * 8 6 5 10 10 C 1.34778 * 120.00341 * 180.28019 * 9 8 6 11 11 O 1.21612 * 119.99727 * 359.71871 * 10 9 8 12 12 C 1.47421 * 119.99994 * 179.72597 * 10 9 8 13 13 C 1.39672 * 120.21909 * 359.97438 * 12 10 9 14 14 C 1.37804 * 119.94363 * 180.02562 * 13 12 10 15 15 C 1.38661 * 120.37880 * 359.97438 * 14 13 12 16 16 C 1.37914 * 120.43994 * 0.02578 * 15 14 13 17 17 C 1.39115 * 120.04469 * 359.67379 * 16 15 14 18 18 S 1.76201 * 120.18647 * 180.32139 * 17 16 15 19 19 C 1.76201 * 100.00134 * 6.85621 * 18 17 16 20 20 H 1.08000 * 119.99961 * 5.65174 * 19 18 17 21 21 C 1.38808 * 120.00125 * 185.65518 * 19 18 17 22 22 N 1.31553 * 119.99937 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00023 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47037 * 90.00238 * 23 21 19 25 25 H 1.48501 * 109.47112 * 209.99989 * 23 21 19 26 26 H 1.48500 * 109.47333 * 330.00311 * 23 21 19 27 27 H 1.08998 * 109.47237 * 299.99401 * 1 2 3 28 28 H 1.08995 * 109.47257 * 59.99872 * 1 2 3 29 29 H 1.09007 * 109.46844 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47321 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47065 * 300.00246 * 3 2 1 32 32 H 1.08998 * 109.46481 * 60.00136 * 3 2 1 33 33 H 1.08998 * 109.47546 * 300.00125 * 4 2 1 34 34 H 1.09004 * 109.47414 * 59.99674 * 4 2 1 35 35 H 1.09003 * 109.47492 * 179.97438 * 4 2 1 36 36 H 0.97005 * 119.99866 * 180.02562 * 8 6 5 37 37 H 0.97006 * 120.00008 * 359.97438 * 9 8 6 38 38 H 1.08000 * 120.03077 * 359.97438 * 13 12 10 39 39 H 1.07997 * 119.81325 * 179.97438 * 14 13 12 40 40 H 1.07996 * 119.78131 * 179.97438 * 15 14 13 41 41 H 1.07993 * 119.97339 * 179.97438 * 16 15 14 42 42 H 0.96995 * 120.00039 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9509 -2.5095 0.5038 8 7 2.0673 -2.6656 2.4169 9 7 2.8756 -2.0462 3.3792 10 6 3.2953 -2.7410 4.4551 11 8 2.9681 -3.9041 4.5932 12 6 4.1507 -2.0910 5.4645 13 6 4.5295 -0.7555 5.3101 14 6 5.3298 -0.1537 6.2569 15 6 5.7623 -0.8663 7.3649 16 6 5.3978 -2.1857 7.5331 17 6 4.5853 -2.8093 6.5916 18 16 4.1104 -4.4923 6.8069 19 6 4.7538 -4.7877 8.4205 20 1 5.1857 -3.9757 8.9866 21 6 4.7055 -6.0641 8.9640 22 7 4.1798 -7.0533 8.2742 23 14 5.3882 -6.3774 10.6743 24 1 4.3141 -6.1776 11.6802 25 1 5.8920 -7.7718 10.7584 26 1 6.5010 -5.4318 10.9439 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6767 -1.7488 -1.2494 34 1 1.6766 -0.2074 -2.1393 35 1 3.1300 -0.7208 -1.2496 36 1 1.8070 -3.5936 2.5267 37 1 3.1368 -1.1186 3.2688 38 1 4.1962 -0.1952 4.4491 39 1 5.6217 0.8790 6.1353 40 1 6.3896 -0.3852 8.1008 41 1 5.7394 -2.7338 8.3987 42 1 4.1464 -7.9452 8.6538 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767179718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:49 Heat of formation + Delta-G solvation = -75.369998 kcal Electronic energy + Delta-G solvation = -26450.693661 eV Core-core repulsion = 22522.861275 eV Total energy + Delta-G solvation = -3927.832387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.08892 -41.03940 -39.14869 -38.25123 -36.93788 -34.90323 -34.76296 -33.12545 -31.80001 -30.94011 -28.33311 -28.24746 -27.83679 -25.06555 -24.28970 -23.42777 -22.13743 -21.18653 -20.16004 -19.56623 -18.86305 -18.10609 -17.49454 -17.34908 -17.17205 -16.91528 -16.15026 -16.10336 -15.92610 -15.50770 -15.34736 -15.33875 -14.75321 -14.55950 -14.44607 -13.72976 -13.34479 -13.31671 -13.27919 -12.98417 -12.91403 -12.89936 -12.86228 -12.75468 -12.56310 -12.44389 -12.25896 -12.04586 -11.65595 -11.43577 -11.43337 -11.36668 -11.25613 -10.41102 -10.00767 -9.92189 -9.51913 -8.47031 -8.45391 -6.24347 -0.03396 0.53802 0.55041 1.27795 1.37617 1.45719 1.46341 1.58433 1.64821 1.93021 2.21638 2.87571 3.02165 3.22383 3.38420 3.76334 3.82312 3.92714 3.97670 4.00494 4.29044 4.53205 4.61282 4.63552 4.65986 4.76874 4.81543 4.82650 4.88957 4.93553 5.03185 5.12790 5.25093 5.31963 5.32043 5.35205 5.45410 5.50575 5.60248 5.69574 5.83585 6.10140 6.16697 6.37286 6.91104 6.96567 7.31282 8.60139 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.019830 B = 0.002682 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.668813 B =10437.865014 C =11649.379432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.125 3.875 3 C -0.136 4.136 4 C -0.183 4.183 5 O -0.362 6.362 6 C 0.662 3.338 7 O -0.575 6.575 8 N -0.495 5.495 9 N -0.509 5.509 10 C 0.554 3.446 11 O -0.546 6.546 12 C -0.173 4.173 13 C -0.051 4.051 14 C -0.154 4.154 15 C -0.063 4.063 16 C -0.173 4.173 17 C -0.067 4.067 18 S 0.068 5.932 19 C -0.601 4.601 20 H 0.097 0.903 21 C 0.024 3.976 22 N -0.905 5.905 23 Si 0.992 3.008 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.256 1.256 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.448 0.552 37 H 0.441 0.559 38 H 0.162 0.838 39 H 0.169 0.831 40 H 0.151 0.849 41 H 0.121 0.879 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.711 22.214 -13.901 26.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.089 3.911 3 C -0.193 4.193 4 C -0.240 4.240 5 O -0.276 6.276 6 C 0.416 3.584 7 O -0.462 6.462 8 N -0.254 5.254 9 N -0.264 5.264 10 C 0.344 3.656 11 O -0.424 6.424 12 C -0.188 4.188 13 C -0.071 4.071 14 C -0.176 4.176 15 C -0.085 4.085 16 C -0.198 4.198 17 C -0.185 4.185 18 S 0.328 5.672 19 C -0.747 4.747 20 H 0.115 0.885 21 C -0.181 4.181 22 N -0.540 5.540 23 Si 0.814 3.186 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.179 1.179 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.295 0.705 37 H 0.287 0.713 38 H 0.179 0.821 39 H 0.186 0.814 40 H 0.169 0.831 41 H 0.138 0.862 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.872 20.189 -14.857 25.136 hybrid contribution 0.741 -0.402 1.775 1.965 sum -1.131 19.787 -13.082 23.748 Atomic orbital electron populations 1.22514 0.93894 1.03662 1.03965 1.22552 0.94687 0.92904 0.80938 1.21910 1.02745 0.89973 1.04654 1.22514 1.01894 1.02119 0.97506 1.86258 1.71422 1.21806 1.48128 1.17741 0.78613 0.81634 0.80460 1.91003 1.42180 1.71044 1.41997 1.43972 1.50597 1.14452 1.16398 1.44635 1.49704 1.14736 1.17339 1.18633 0.80316 0.85964 0.80729 1.90836 1.57979 1.17809 1.75791 1.18991 1.07087 0.96496 0.96255 1.21453 0.95242 0.90871 0.99518 1.21337 1.00314 1.01713 0.94281 1.21587 0.96689 0.92198 0.97988 1.21454 1.01056 0.97199 1.00109 1.22929 0.98288 1.00646 0.96656 1.84906 1.62784 1.01773 1.17785 1.24248 1.47347 0.98809 1.04318 0.88504 1.26138 0.94283 0.94421 1.03284 1.70122 1.42426 1.01820 1.39616 0.85045 0.78964 0.78072 0.76568 1.19210 1.20011 1.17936 0.91701 0.88690 0.92208 0.90774 0.87800 0.90785 0.92210 0.88691 0.91696 0.70508 0.71323 0.82098 0.81366 0.83106 0.86168 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 8.37 71.98 0.60 -2.32 16 2 C 0.12 1.96 1.13 -10.79 -0.01 1.95 16 3 C -0.14 -1.18 8.85 71.98 0.64 -0.54 16 4 C -0.18 -2.92 8.37 71.98 0.60 -2.32 16 5 O -0.36 -7.44 8.96 -55.45 -0.50 -7.94 16 6 C 0.66 17.39 8.11 129.79 1.05 18.44 16 7 O -0.57 -17.30 12.72 19.79 0.25 -17.05 16 8 N -0.50 -13.92 6.26 -297.02 -1.86 -15.78 16 9 N -0.51 -13.74 6.22 -175.88 -1.09 -14.83 16 10 C 0.55 20.28 7.87 86.66 0.68 20.97 16 11 O -0.55 -25.41 13.61 -4.07 -0.06 -25.46 16 12 C -0.17 -6.16 5.89 -19.95 -0.12 -6.28 16 13 C -0.05 -1.21 9.53 22.51 0.21 -1.00 16 14 C -0.15 -3.28 10.02 22.27 0.22 -3.06 16 15 C -0.06 -1.72 10.03 22.29 0.22 -1.50 16 16 C -0.17 -6.71 9.22 22.40 0.21 -6.50 16 17 C -0.07 -2.94 6.15 23.04 0.14 -2.80 16 18 S 0.07 3.79 18.56 -56.49 -1.05 2.74 16 19 C -0.60 -34.08 9.00 67.96 0.61 -33.47 16 20 H 0.10 5.14 4.98 -2.91 -0.01 5.13 16 21 C 0.02 1.38 5.49 84.87 0.47 1.84 16 22 N -0.91 -54.68 13.22 21.65 0.29 -54.40 16 23 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 25 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.33 5.88 -2.38 -0.01 1.31 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 1.33 5.88 -2.39 -0.01 1.31 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.45 13.67 8.10 -213.32 -1.73 11.94 16 37 H 0.44 8.68 5.98 -213.32 -1.28 7.40 16 38 H 0.16 2.28 6.40 -2.91 -0.02 2.26 16 39 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 41 H 0.12 5.10 5.04 -2.91 -0.01 5.08 16 42 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -77.24 362.14 1.63 -75.61 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: -1.91 Total: 28.56 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 5.53 Total: -16.59 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -2.67 Total: -85.00 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -0.30 Total: -50.45 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.05 Total: 2.74 kcal Total: -77.24 1.63 -75.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767179718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.239 kcal (2) G-P(sol) polarization free energy of solvation -77.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds