Wall clock time and date at job start Tue Mar 31 2020 21:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47348 * 2 1 4 4 C 1.53002 * 109.47188 * 239.99395 * 2 1 3 5 5 S 1.81404 * 109.47192 * 119.99536 * 2 1 3 6 6 C 1.76203 * 102.99769 * 59.99877 * 5 2 1 7 7 C 1.39183 * 119.64621 * 179.97438 * 6 5 2 8 8 C 1.39521 * 118.92043 * 179.70153 * 7 6 5 9 9 C 1.48057 * 120.88247 * 180.25632 * 8 7 6 10 10 O 1.21421 * 120.00188 * 359.97438 * 9 8 7 11 11 O 1.34670 * 119.99617 * 180.02562 * 9 8 7 12 12 C 1.45203 * 116.99997 * 180.02562 * 11 9 8 13 13 C 1.50693 * 109.47291 * 179.97438 * 12 11 9 14 14 O 1.21296 * 120.00278 * 0.02562 * 13 12 11 15 15 N 1.34783 * 120.00064 * 179.97438 * 13 12 11 16 16 C 1.37094 * 119.99944 * 180.02562 * 15 13 12 17 17 H 1.08005 * 120.00125 * 359.97438 * 16 15 13 18 18 C 1.38950 * 120.00096 * 180.02562 * 16 15 13 19 19 N 1.31412 * 119.99555 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00228 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47022 * 59.99722 * 20 18 16 22 22 H 1.48504 * 109.46866 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47151 * 299.99936 * 20 18 16 24 24 C 1.40085 * 118.22951 * 0.27874 * 8 7 6 25 25 C 1.37951 * 119.18417 * 359.97438 * 24 8 7 26 26 N 1.31906 * 121.01296 * 0.02562 * 25 24 8 27 27 H 1.09003 * 109.46913 * 300.00715 * 1 2 3 28 28 H 1.08994 * 109.47198 * 60.00129 * 1 2 3 29 29 H 1.08996 * 109.47405 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47395 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46503 * 299.99520 * 3 2 1 32 32 H 1.08997 * 109.47574 * 59.99323 * 3 2 1 33 33 H 1.08996 * 109.47096 * 300.00370 * 4 2 1 34 34 H 1.08994 * 109.46662 * 60.00148 * 4 2 1 35 35 H 1.08999 * 109.47138 * 179.97438 * 4 2 1 36 36 H 1.08002 * 120.54384 * 359.97438 * 7 6 5 37 37 H 1.09000 * 109.46771 * 299.99754 * 12 11 9 38 38 H 1.09003 * 109.46982 * 59.99540 * 12 11 9 39 39 H 0.96997 * 119.99940 * 0.02562 * 15 13 12 40 40 H 0.97001 * 119.99587 * 179.97438 * 19 18 16 41 41 H 1.08005 * 120.40464 * 179.97438 * 24 8 7 42 42 H 1.08001 * 119.49091 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 16 2.1347 -0.8550 1.4812 6 6 1.4574 -2.4726 1.3093 7 6 1.7144 -3.4336 2.2828 8 6 1.1653 -4.7076 2.1347 9 6 1.4059 -5.7612 3.1468 10 8 2.0893 -5.5220 4.1215 11 8 0.8676 -6.9850 2.9857 12 6 1.1449 -7.9682 4.0176 13 6 0.4647 -9.2671 3.6697 14 8 -0.1891 -9.3558 2.6519 15 7 0.5837 -10.3307 4.4890 16 6 -0.0347 -11.5126 4.1722 17 1 -0.6175 -11.5912 3.2663 18 6 0.0875 -12.6089 5.0171 19 7 0.7963 -12.5130 6.1195 20 14 -0.7557 -14.2191 4.5858 21 1 -0.2438 -14.7121 3.2819 22 1 -0.4715 -15.2247 5.6409 23 1 -2.2214 -14.0005 4.4915 24 6 0.3808 -4.9636 1.0027 25 6 0.1794 -3.9562 0.0821 26 7 0.7137 -2.7623 0.2532 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6766 -1.7490 -1.2491 34 1 1.6767 -0.2076 -2.1391 35 1 3.1300 -0.7210 -1.2494 36 1 2.3251 -3.1957 3.1412 37 1 2.2209 -8.1283 4.0870 38 1 0.7689 -7.6064 4.9746 39 1 1.1069 -10.2600 5.3027 40 1 0.8813 -13.2782 6.7095 41 1 -0.0610 -5.9377 0.8527 42 1 -0.4242 -4.1482 -0.7927 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778863184.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:58 Heat of formation + Delta-G solvation = -86.188834 kcal Electronic energy + Delta-G solvation = -25544.783047 eV Core-core repulsion = 21616.481521 eV Total energy + Delta-G solvation = -3928.301527 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.89059 -39.77111 -38.16660 -36.61388 -36.24256 -34.05121 -33.13118 -31.67953 -31.42289 -28.61915 -27.70720 -27.61124 -25.54414 -24.44720 -23.96945 -21.48723 -20.92974 -19.65597 -18.76716 -18.13742 -17.37269 -16.63597 -16.46528 -16.42616 -15.94609 -15.73270 -15.21802 -14.73108 -14.60737 -14.58672 -14.48552 -14.14703 -14.02357 -13.93705 -13.16142 -12.92064 -12.64421 -12.62940 -12.41687 -12.12742 -11.95569 -11.79793 -11.65379 -11.50117 -11.42894 -11.14568 -10.79596 -10.53955 -10.51793 -10.36917 -10.34789 -10.32832 -10.08813 -9.79597 -9.63552 -8.58542 -8.12589 -7.88494 -6.53534 -3.95866 0.27052 0.66182 1.08890 1.85872 2.38661 2.46028 3.12713 3.20759 3.25012 3.40243 3.68584 4.04692 4.17708 4.33472 4.38323 4.38461 4.61453 4.65984 4.74930 4.87120 4.98222 5.10954 5.16917 5.24255 5.29468 5.33811 5.40480 5.47623 5.50556 5.52999 5.57889 5.61929 5.66572 5.79373 5.97779 5.98734 5.99948 6.24539 6.40806 7.30451 7.44094 7.63662 7.89734 8.43651 9.02844 9.34535 9.83950 10.63428 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.037901 B = 0.001843 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.584844 B =15190.004376 C =15732.199788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.039 4.039 3 C -0.133 4.133 4 C -0.150 4.150 5 S -0.068 6.068 6 C 0.114 3.886 7 C -0.090 4.090 8 C -0.053 4.053 9 C 0.505 3.495 10 O -0.499 6.499 11 O -0.316 6.316 12 C 0.061 3.939 13 C 0.437 3.563 14 O -0.577 6.577 15 N -0.550 5.550 16 C -0.304 4.304 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.896 5.896 20 Si 0.935 3.065 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 C -0.118 4.118 25 C 0.105 3.895 26 N -0.464 5.464 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.153 0.847 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.395 0.605 40 H 0.275 0.725 41 H 0.160 0.840 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.343 24.689 -10.601 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.191 4.191 4 C -0.208 4.208 5 S 0.173 5.827 6 C -0.135 4.135 7 C -0.116 4.116 8 C -0.064 4.064 9 C 0.348 3.652 10 O -0.387 6.387 11 O -0.230 6.230 12 C -0.016 4.016 13 C 0.222 3.778 14 O -0.461 6.461 15 N -0.187 5.187 16 C -0.433 4.433 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.536 5.536 20 Si 0.762 3.238 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.141 4.141 25 C -0.054 4.054 26 N -0.177 5.177 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.171 0.829 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.229 0.771 40 H 0.085 0.915 41 H 0.178 0.822 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.721 25.701 -10.583 27.927 hybrid contribution -0.570 -2.038 0.261 2.133 sum 2.151 23.662 -10.322 25.905 Atomic orbital electron populations 1.22224 0.91932 1.04651 1.01983 1.22812 0.99535 0.97512 0.95027 1.21738 1.01719 0.92668 1.03013 1.22231 1.01006 1.02553 0.95030 1.85594 1.64076 1.00906 1.32080 1.22854 0.98611 0.98690 0.93299 1.21755 0.99172 0.90970 0.99679 1.19355 0.99739 0.92335 0.94936 1.21000 0.77069 0.82462 0.84669 1.90837 1.36260 1.81621 1.30029 1.86568 1.67683 1.19942 1.48841 1.22840 1.01694 0.87500 0.89591 1.19251 0.87193 0.84476 0.86874 1.90559 1.44766 1.83768 1.26996 1.41690 1.45719 1.09498 1.21829 1.19679 1.28447 0.86847 1.08339 0.87616 1.25324 0.97174 0.99967 0.95235 1.69606 1.39472 1.32575 1.11962 0.85846 0.79595 0.80238 0.78140 1.19737 1.20842 1.19735 1.22621 0.96426 1.02206 0.92831 1.22823 0.96416 0.87490 0.98712 1.67863 1.08525 1.21524 1.19834 0.92341 0.91997 0.89615 0.91692 0.90695 0.91695 0.89555 0.92013 0.92348 0.82907 0.89231 0.89238 0.77114 0.91518 0.82187 0.81301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.27 37.16 0.31 -0.84 16 2 C -0.04 -0.30 0.86 -90.62 -0.08 -0.38 16 3 C -0.13 -0.79 8.48 37.16 0.32 -0.47 16 4 C -0.15 -1.15 8.27 37.16 0.31 -0.85 16 5 S -0.07 -0.66 20.85 -107.50 -2.24 -2.90 16 6 C 0.11 1.26 6.67 -16.96 -0.11 1.14 16 7 C -0.09 -1.08 9.41 -38.75 -0.36 -1.44 16 8 C -0.05 -0.70 5.90 -104.70 -0.62 -1.31 16 9 C 0.51 8.03 7.92 34.76 0.28 8.30 16 10 O -0.50 -8.65 16.23 -19.20 -0.31 -8.96 16 11 O -0.32 -5.68 9.11 -47.09 -0.43 -6.11 16 12 C 0.06 1.13 5.95 36.00 0.21 1.34 16 13 C 0.44 10.26 7.86 -10.99 -0.09 10.18 16 14 O -0.58 -15.53 16.08 -14.11 -0.23 -15.76 16 15 N -0.55 -13.64 5.29 -10.96 -0.06 -13.69 16 16 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 17 H 0.11 2.98 7.16 -52.48 -0.38 2.61 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 19 N -0.90 -23.70 13.05 55.50 0.72 -22.98 16 20 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 C -0.12 -1.33 9.70 -38.99 -0.38 -1.70 16 25 C 0.10 0.99 11.16 -17.62 -0.20 0.79 16 26 N -0.46 -4.76 4.61 -12.16 -0.06 -4.82 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.78 5.44 -51.93 -0.28 0.50 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.79 5.42 -51.93 -0.28 0.50 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.15 1.78 7.74 -52.49 -0.41 1.37 16 37 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.40 9.28 7.90 -40.82 -0.32 8.96 16 40 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.16 1.80 7.71 -52.48 -0.40 1.40 16 42 H 0.17 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 372.72 15.07 5.62 5.62 Total: -1.00 -31.29 372.72 -8.10 -39.38 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.43 Total: 7.89 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -0.66 Total: 6.94 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.61 Total: -41.49 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.97 Total: -30.83 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: -0.66 SS G_CDS: -2.24 Total: -2.90 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.29 -8.10 -39.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778863184.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.806 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds