Wall clock time and date at job start Tue Mar 31 2020 21:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47348 * 2 1 4 4 C 1.53002 * 109.47188 * 239.99395 * 2 1 3 5 5 S 1.81404 * 109.47192 * 119.99536 * 2 1 3 6 6 C 1.76203 * 102.99769 * 59.99877 * 5 2 1 7 7 C 1.39183 * 119.64621 * 179.97438 * 6 5 2 8 8 C 1.39521 * 118.92043 * 179.70153 * 7 6 5 9 9 C 1.48057 * 120.88247 * 180.25632 * 8 7 6 10 10 O 1.21421 * 120.00188 * 359.97438 * 9 8 7 11 11 O 1.34670 * 119.99617 * 180.02562 * 9 8 7 12 12 C 1.45203 * 116.99997 * 180.02562 * 11 9 8 13 13 C 1.50693 * 109.47291 * 179.97438 * 12 11 9 14 14 O 1.21296 * 120.00278 * 0.02562 * 13 12 11 15 15 N 1.34783 * 120.00064 * 179.97438 * 13 12 11 16 16 C 1.37094 * 119.99944 * 180.02562 * 15 13 12 17 17 H 1.08005 * 120.00125 * 359.97438 * 16 15 13 18 18 C 1.38950 * 120.00096 * 180.02562 * 16 15 13 19 19 N 1.31412 * 119.99555 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00228 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47022 * 59.99722 * 20 18 16 22 22 H 1.48504 * 109.46866 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47151 * 299.99936 * 20 18 16 24 24 C 1.40085 * 118.22951 * 0.27874 * 8 7 6 25 25 C 1.37951 * 119.18417 * 359.97438 * 24 8 7 26 26 N 1.31906 * 121.01296 * 0.02562 * 25 24 8 27 27 H 1.09003 * 109.46913 * 300.00715 * 1 2 3 28 28 H 1.08994 * 109.47198 * 60.00129 * 1 2 3 29 29 H 1.08996 * 109.47405 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47395 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46503 * 299.99520 * 3 2 1 32 32 H 1.08997 * 109.47574 * 59.99323 * 3 2 1 33 33 H 1.08996 * 109.47096 * 300.00370 * 4 2 1 34 34 H 1.08994 * 109.46662 * 60.00148 * 4 2 1 35 35 H 1.08999 * 109.47138 * 179.97438 * 4 2 1 36 36 H 1.08002 * 120.54384 * 359.97438 * 7 6 5 37 37 H 1.09000 * 109.46771 * 299.99754 * 12 11 9 38 38 H 1.09003 * 109.46982 * 59.99540 * 12 11 9 39 39 H 0.96997 * 119.99940 * 0.02562 * 15 13 12 40 40 H 0.97001 * 119.99587 * 179.97438 * 19 18 16 41 41 H 1.08005 * 120.40464 * 179.97438 * 24 8 7 42 42 H 1.08001 * 119.49091 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 16 2.1347 -0.8550 1.4812 6 6 1.4574 -2.4726 1.3093 7 6 1.7144 -3.4336 2.2828 8 6 1.1653 -4.7076 2.1347 9 6 1.4059 -5.7612 3.1468 10 8 2.0893 -5.5220 4.1215 11 8 0.8676 -6.9850 2.9857 12 6 1.1449 -7.9682 4.0176 13 6 0.4647 -9.2671 3.6697 14 8 -0.1891 -9.3558 2.6519 15 7 0.5837 -10.3307 4.4890 16 6 -0.0347 -11.5126 4.1722 17 1 -0.6175 -11.5912 3.2663 18 6 0.0875 -12.6089 5.0171 19 7 0.7963 -12.5130 6.1195 20 14 -0.7557 -14.2191 4.5858 21 1 -0.2438 -14.7121 3.2819 22 1 -0.4715 -15.2247 5.6409 23 1 -2.2214 -14.0005 4.4915 24 6 0.3808 -4.9636 1.0027 25 6 0.1794 -3.9562 0.0821 26 7 0.7137 -2.7623 0.2532 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6766 -1.7490 -1.2491 34 1 1.6767 -0.2076 -2.1391 35 1 3.1300 -0.7210 -1.2494 36 1 2.3251 -3.1957 3.1412 37 1 2.2209 -8.1283 4.0870 38 1 0.7689 -7.6064 4.9746 39 1 1.1069 -10.2600 5.3027 40 1 0.8813 -13.2782 6.7095 41 1 -0.0610 -5.9377 0.8527 42 1 -0.4242 -4.1482 -0.7927 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778863184.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:57 Heat of formation + Delta-G solvation = -102.776287 kcal Electronic energy + Delta-G solvation = -25545.502333 eV Core-core repulsion = 21616.481521 eV Total energy + Delta-G solvation = -3929.020812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.04125 -40.88928 -39.98448 -37.68101 -37.18275 -36.04679 -34.08050 -33.42161 -32.53148 -30.20090 -28.23797 -28.20155 -27.00203 -25.96015 -24.86380 -22.62852 -21.56345 -21.46518 -20.09710 -19.86711 -18.56042 -17.86322 -17.85729 -17.44003 -17.14343 -16.91162 -16.51973 -16.03356 -15.92313 -15.75972 -15.34884 -15.24903 -15.13437 -14.89812 -14.58378 -14.05851 -13.88769 -13.59957 -13.54874 -13.21637 -13.16278 -12.93970 -12.56167 -12.53330 -12.49307 -12.25305 -12.13158 -12.00298 -11.98184 -11.96595 -11.57864 -11.25222 -11.02743 -10.93637 -10.62516 -10.52725 -10.12961 -8.65776 -8.52894 -6.03659 -0.72081 -0.19730 0.31984 1.14995 1.17338 1.23725 1.37345 1.43824 1.54950 1.85493 2.28153 2.49978 2.90192 3.12634 3.38200 3.40734 3.72201 3.75436 3.81400 3.84194 3.90535 4.07924 4.10786 4.18728 4.19076 4.47012 4.53550 4.70536 4.73786 4.87992 4.89124 4.93848 4.95455 4.97548 5.06281 5.18261 5.25267 5.36343 5.39870 5.54448 5.87328 6.33783 6.47160 6.48622 7.01629 7.38242 7.91113 8.63695 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.037901 B = 0.001843 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.584844 B =15190.004376 C =15732.199788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.036 4.036 3 C -0.130 4.130 4 C -0.147 4.147 5 S -0.080 6.080 6 C 0.109 3.891 7 C -0.097 4.097 8 C -0.069 4.069 9 C 0.509 3.491 10 O -0.517 6.517 11 O -0.330 6.330 12 C 0.071 3.929 13 C 0.437 3.563 14 O -0.615 6.615 15 N -0.556 5.556 16 C -0.339 4.339 17 H 0.086 0.914 18 C -0.009 4.009 19 N -0.914 5.914 20 Si 0.998 3.002 21 H -0.270 1.270 22 H -0.270 1.270 23 H -0.270 1.270 24 C -0.120 4.120 25 C 0.116 3.884 26 N -0.458 5.458 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.151 0.849 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.400 0.600 40 H 0.281 0.719 41 H 0.159 0.841 42 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.105 25.807 -11.636 28.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.189 4.189 4 C -0.206 4.206 5 S 0.162 5.838 6 C -0.138 4.138 7 C -0.123 4.123 8 C -0.079 4.079 9 C 0.354 3.646 10 O -0.406 6.406 11 O -0.244 6.244 12 C -0.006 4.006 13 C 0.224 3.776 14 O -0.502 6.502 15 N -0.194 5.194 16 C -0.468 4.468 17 H 0.104 0.896 18 C -0.210 4.210 19 N -0.554 5.554 20 Si 0.821 3.179 21 H -0.195 1.195 22 H -0.195 1.195 23 H -0.195 1.195 24 C -0.143 4.143 25 C -0.044 4.044 26 N -0.172 5.172 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.169 0.831 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.235 0.765 40 H 0.090 0.910 41 H 0.176 0.824 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.507 26.844 -11.594 29.348 hybrid contribution -0.488 -2.264 0.525 2.374 sum 2.019 24.581 -11.070 27.034 Atomic orbital electron populations 1.22191 0.91759 1.03943 1.02677 1.22962 0.99626 0.98177 0.93787 1.21756 1.01835 0.91403 1.03936 1.22197 1.00885 1.01925 0.95594 1.85656 1.64029 1.00307 1.33786 1.23033 0.98501 0.99183 0.93110 1.21767 0.99486 0.90868 1.00153 1.19275 1.01509 0.91931 0.95200 1.21417 0.76256 0.81984 0.84980 1.90818 1.37140 1.81706 1.30976 1.86560 1.68347 1.20731 1.48805 1.22627 1.02177 0.85473 0.90350 1.19996 0.86214 0.85630 0.85789 1.90525 1.46366 1.84768 1.28545 1.41726 1.45851 1.09538 1.22259 1.19696 1.29972 0.88515 1.08586 0.89594 1.26134 0.97322 1.02666 0.94829 1.69668 1.39714 1.33677 1.12366 0.84910 0.78494 0.76302 0.78177 1.19472 1.19484 1.19463 1.22687 0.96196 1.02736 0.92674 1.23351 0.95580 0.86485 0.98951 1.68007 1.08148 1.21723 1.19323 0.92536 0.90410 0.90950 0.91576 0.88918 0.91576 0.90890 0.90428 0.92545 0.83111 0.87213 0.87218 0.76544 0.90961 0.82373 0.77847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.27 71.98 0.60 -1.37 16 2 C -0.04 -0.48 0.86 -10.79 -0.01 -0.49 16 3 C -0.13 -1.26 8.48 71.98 0.61 -0.64 16 4 C -0.15 -1.98 8.27 71.98 0.60 -1.38 16 5 S -0.08 -1.46 20.85 -56.49 -1.18 -2.64 16 6 C 0.11 2.34 6.67 84.84 0.57 2.90 16 7 C -0.10 -2.32 9.41 22.81 0.21 -2.10 16 8 C -0.07 -1.80 5.90 -19.91 -0.12 -1.92 16 9 C 0.51 16.24 7.92 70.43 0.56 16.80 16 10 O -0.52 -17.93 16.23 20.09 0.33 -17.61 16 11 O -0.33 -11.89 9.11 -49.41 -0.45 -12.34 16 12 C 0.07 2.60 5.95 71.23 0.42 3.02 16 13 C 0.44 20.84 7.86 87.65 0.69 21.53 16 14 O -0.62 -33.95 16.08 15.72 0.25 -33.70 16 15 N -0.56 -28.03 5.29 -306.98 -1.62 -29.66 16 16 C -0.34 -18.71 9.68 84.04 0.81 -17.89 16 17 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 18 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 19 N -0.91 -48.05 13.05 21.66 0.28 -47.76 16 20 Si 1.00 41.48 29.55 68.60 2.03 43.50 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 24 C -0.12 -2.62 9.70 22.65 0.22 -2.40 16 25 C 0.12 1.98 11.16 84.61 0.94 2.92 16 26 N -0.46 -8.76 4.61 -192.38 -0.89 -9.64 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 29 H 0.07 1.18 5.44 -2.39 -0.01 1.17 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 1.19 5.42 -2.39 -0.01 1.18 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.15 3.58 7.74 -2.91 -0.02 3.56 16 37 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 38 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 39 H 0.40 19.01 7.90 -92.71 -0.73 18.28 16 40 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 41 H 0.16 3.52 7.71 -2.91 -0.02 3.50 16 42 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -67.37 372.72 5.65 -61.72 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.33 Total: 29.13 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 6.57 Total: 19.00 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -2.23 Total: -87.06 kcal Atomic # 8 Polarization: -63.78 SS G_CDS: 0.13 Total: -63.65 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -1.18 Total: -2.64 kcal Total: -67.37 5.65 -61.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778863184.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.055 kcal (2) G-P(sol) polarization free energy of solvation -67.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds