Wall clock time and date at job start Tue Mar 31 2020 20:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.56902 * 2 1 4 4 C 1.50432 * 109.56900 * 120.23986 * 2 1 3 5 5 O 1.21276 * 118.49080 * 287.10992 * 4 2 1 6 6 N 1.33383 * 123.02445 * 107.09060 * 4 2 1 7 7 C 1.45648 * 124.58805 * 4.33658 * 6 4 2 8 8 C 1.52992 * 110.74090 * 338.12624 * 7 6 4 9 9 N 1.47049 * 109.56333 * 239.64652 * 2 1 3 10 10 S 1.65601 * 121.35704 * 102.93285 * 9 2 1 11 11 O 1.42092 * 106.40648 * 198.74461 * 10 9 2 12 12 O 1.42107 * 106.39716 * 331.66304 * 10 9 2 13 13 C 1.76197 * 107.21894 * 85.20166 * 10 9 2 14 14 C 1.38660 * 119.87649 * 269.73433 * 13 10 9 15 15 C 1.38617 * 120.49826 * 179.72420 * 14 13 10 16 16 C 1.37631 * 120.24770 * 0.54915 * 15 14 13 17 17 C 1.40696 * 119.74940 * 359.72289 * 16 15 14 18 18 C 1.41392 * 120.24528 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99455 * 155.24383 * 18 17 16 20 20 C 1.39940 * 120.00415 * 335.24254 * 18 17 16 21 21 N 1.30822 * 119.99671 * 344.96667 * 20 18 17 22 22 Si 1.86800 * 120.00287 * 164.96430 * 20 18 17 23 23 H 1.48505 * 109.46712 * 89.99893 * 22 20 18 24 24 H 1.48498 * 109.47393 * 210.00058 * 22 20 18 25 25 H 1.48497 * 109.46985 * 330.00310 * 22 20 18 26 26 C 1.37595 * 119.87784 * 90.00430 * 13 10 9 27 27 H 1.09003 * 109.46848 * 299.75960 * 1 2 3 28 28 H 1.09002 * 109.47424 * 59.75904 * 1 2 3 29 29 H 1.09000 * 109.47588 * 179.76324 * 1 2 3 30 30 H 1.08996 * 109.47089 * 188.47887 * 3 2 1 31 31 H 1.09001 * 109.46659 * 308.48148 * 3 2 1 32 32 H 1.09000 * 109.46761 * 68.47673 * 3 2 1 33 33 H 0.96996 * 117.70965 * 184.32017 * 6 4 2 34 34 H 1.09006 * 109.21344 * 98.43690 * 7 6 4 35 35 H 1.09002 * 109.22179 * 217.81146 * 7 6 4 36 36 H 1.08996 * 109.72295 * 166.37497 * 8 7 6 37 37 H 1.09000 * 109.71521 * 287.02840 * 8 7 6 38 38 H 1.07998 * 119.75067 * 359.97438 * 14 13 10 39 39 H 1.08001 * 119.87201 * 180.24874 * 15 14 13 40 40 H 1.08005 * 120.12340 * 179.70998 * 16 15 14 41 41 H 0.97002 * 119.99645 * 180.02562 * 21 20 18 42 42 H 1.08008 * 120.12412 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0425 1.4416 0.0000 4 6 2.0339 -0.7138 1.2245 5 8 1.9322 -0.1612 2.2993 6 7 2.5870 -1.9268 1.1828 7 6 2.8562 -2.6712 -0.0398 8 6 1.9728 -2.1709 -1.1843 9 7 2.0224 -0.7002 -1.1957 10 16 2.6092 0.1324 -2.5014 11 8 2.5766 -0.7687 -3.5996 12 8 1.9456 1.3890 -2.5071 13 6 4.3094 0.4689 -2.1843 14 6 4.6728 1.6414 -1.5394 15 6 6.0061 1.9165 -1.2783 16 6 6.9857 1.0316 -1.6676 17 6 6.6291 -0.1586 -2.3277 18 6 7.6269 -1.0753 -2.7318 19 1 7.3809 -2.1191 -2.8606 20 6 8.9330 -0.6303 -2.9647 21 7 9.1741 0.6484 -3.0992 22 14 10.3323 -1.8622 -3.0836 23 1 10.4928 -2.2941 -4.4954 24 1 11.5906 -1.2290 -2.6136 25 1 10.0257 -3.0427 -2.2366 26 6 5.2719 -0.4301 -2.5824 27 1 -0.3633 0.5101 0.8922 28 1 -0.3634 0.5176 -0.8878 29 1 -0.3634 -1.0276 -0.0042 30 1 3.1219 1.4435 -0.1515 31 1 1.5616 1.9981 -0.8045 32 1 1.8089 1.9102 0.9560 33 1 2.8271 -2.3423 2.0258 34 1 3.9038 -2.5447 -0.3135 35 1 2.6557 -3.7287 0.1324 36 1 2.3453 -2.5580 -2.1327 37 1 0.9463 -2.5029 -1.0286 38 1 3.9111 2.3437 -1.2346 39 1 6.2775 2.8310 -0.7718 40 1 8.0243 1.2502 -1.4673 41 1 10.0795 0.9568 -3.2611 42 1 4.9869 -1.3409 -3.0881 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795100785.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:30 Heat of formation + Delta-G solvation = -71.314433 kcal Electronic energy + Delta-G solvation = -28852.437370 eV Core-core repulsion = 24924.780846 eV Total energy + Delta-G solvation = -3927.656524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.57773 -37.75199 -37.11646 -36.93662 -35.47987 -35.03186 -33.92176 -31.73128 -30.19173 -29.90250 -28.38138 -27.38391 -25.50879 -24.23116 -22.90420 -21.91961 -21.07813 -19.63910 -18.33389 -18.02621 -17.41124 -17.32395 -16.23162 -15.97641 -15.61137 -15.39030 -15.06733 -14.83292 -14.49894 -14.24674 -13.65037 -13.53764 -13.46366 -13.21090 -12.71872 -12.67047 -12.38022 -12.31231 -12.11919 -12.00680 -11.79702 -11.68173 -11.57409 -11.48835 -11.44088 -11.16505 -11.06709 -10.86520 -10.63938 -10.51297 -10.08636 -9.77465 -9.60593 -9.41515 -9.17090 -8.91450 -8.08221 -7.73677 -6.94867 -4.59718 0.79791 2.11420 2.57504 2.60544 2.96473 2.97591 3.02278 3.06440 3.35727 3.78404 4.10349 4.32265 4.42594 4.57856 4.60617 4.86340 4.93169 5.02141 5.15880 5.29210 5.37153 5.51626 5.62997 5.70896 5.81290 5.93178 5.98357 6.00953 6.07957 6.15382 6.37708 6.56566 6.59447 6.71763 6.74027 6.84733 6.99765 7.16003 7.24703 7.30570 7.67498 7.74553 7.89009 8.17460 8.34501 8.62110 8.65765 9.99464 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.004218 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.893996 B = 6635.912135 C = 6914.961806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.181 3.819 3 C -0.219 4.219 4 C 0.526 3.474 5 O -0.548 6.548 6 N -0.713 5.713 7 C 0.091 3.909 8 C 0.103 3.897 9 N -0.999 5.999 10 S 2.688 3.312 11 O -0.966 6.966 12 O -0.964 6.964 13 C -0.633 4.633 14 C -0.152 4.152 15 C -0.120 4.120 16 C -0.115 4.115 17 C 0.091 3.909 18 C -0.458 4.458 19 H 0.082 0.918 20 C 0.073 3.927 21 N -0.795 5.795 22 Si 0.913 3.087 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.260 1.260 26 C -0.126 4.126 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.124 0.876 32 H 0.087 0.913 33 H 0.398 0.602 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.128 0.872 41 H 0.284 0.716 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.334 -5.505 5.211 12.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.091 3.909 3 C -0.277 4.277 4 C 0.311 3.689 5 O -0.425 6.425 6 N -0.364 5.364 7 C -0.035 4.035 8 C -0.023 4.023 9 N -0.836 5.836 10 S 2.787 3.213 11 O -0.957 6.957 12 O -0.954 6.954 13 C -0.725 4.725 14 C -0.173 4.173 15 C -0.140 4.140 16 C -0.135 4.135 17 C 0.088 3.912 18 C -0.488 4.488 19 H 0.100 0.900 20 C -0.145 4.145 21 N -0.420 5.420 22 Si 0.737 3.263 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.184 1.184 26 C -0.147 4.147 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.142 0.858 32 H 0.106 0.894 33 H 0.233 0.767 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.134 0.866 37 H 0.100 0.900 38 H 0.133 0.867 39 H 0.117 0.883 40 H 0.146 0.854 41 H 0.095 0.905 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.771 -4.733 4.717 12.676 hybrid contribution 1.692 -0.796 0.550 1.949 sum -9.079 -5.530 5.267 11.864 Atomic orbital electron populations 1.22106 0.91996 1.02745 1.04029 1.20317 0.95657 0.93356 0.81614 1.23329 1.04807 0.92535 1.07030 1.20186 0.76785 0.81128 0.90794 1.90730 1.57126 1.64572 1.30096 1.45252 1.62794 1.18152 1.10216 1.21839 1.01081 0.95869 0.84717 1.21766 1.00914 0.79353 1.00217 1.58311 1.78056 1.14630 1.32637 1.01827 0.74809 0.72795 0.71840 1.93512 1.87876 1.65445 1.48873 1.93449 1.74385 1.41892 1.85695 1.29730 1.21001 1.05214 1.16547 1.20262 0.96516 0.96169 1.04387 1.20849 0.93150 0.98857 1.01125 1.21736 0.99132 0.95289 0.97366 1.17681 0.91263 0.92713 0.89566 1.19592 0.92853 0.96130 1.40193 0.90004 1.25942 1.00353 0.95881 0.92292 1.69756 1.23055 1.15269 1.33953 0.86224 0.79461 0.80997 0.79608 1.19281 1.19993 1.18374 1.20703 0.93212 0.98515 1.02318 0.90419 0.90351 0.92095 0.89339 0.85770 0.89445 0.76657 0.90242 0.89327 0.86622 0.90030 0.86673 0.88299 0.85400 0.90512 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.66 37.16 0.32 -1.41 16 2 C 0.18 2.56 0.93 -132.80 -0.12 2.44 16 3 C -0.22 -3.36 6.53 37.16 0.24 -3.12 16 4 C 0.53 7.74 6.61 -11.74 -0.08 7.66 16 5 O -0.55 -9.56 17.03 5.56 0.09 -9.46 16 6 N -0.71 -8.45 5.42 -61.32 -0.33 -8.78 16 7 C 0.09 0.91 7.34 -4.50 -0.03 0.88 16 8 C 0.10 1.13 6.41 -3.68 -0.02 1.11 16 9 N -1.00 -14.28 2.93 -100.98 -0.30 -14.58 16 10 S 2.69 48.40 5.18 -107.50 -0.56 47.85 16 11 O -0.97 -19.03 15.85 -57.17 -0.91 -19.94 16 12 O -0.96 -18.20 13.48 -57.17 -0.77 -18.97 16 13 C -0.63 -13.29 5.77 -39.66 -0.23 -13.52 16 14 C -0.15 -3.22 7.67 -39.29 -0.30 -3.52 16 15 C -0.12 -2.66 10.02 -39.66 -0.40 -3.06 16 16 C -0.12 -2.81 8.70 -38.88 -0.34 -3.15 16 17 C 0.09 2.27 5.58 -106.83 -0.60 1.68 16 18 C -0.46 -11.32 9.07 -37.75 -0.34 -11.67 16 19 H 0.08 1.91 7.89 -52.48 -0.41 1.49 16 20 C 0.07 1.73 5.20 -17.34 -0.09 1.64 16 21 N -0.80 -19.44 10.81 55.55 0.60 -18.84 16 22 Si 0.91 17.57 29.59 -169.99 -5.03 12.54 16 23 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 24 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 25 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 26 C -0.13 -2.88 9.26 -38.87 -0.36 -3.24 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.60 7.48 -51.93 -0.39 0.21 16 30 H 0.09 1.49 3.81 -51.93 -0.20 1.29 16 31 H 0.12 1.93 5.46 -51.93 -0.28 1.65 16 32 H 0.09 1.26 7.61 -51.93 -0.40 0.86 16 33 H 0.40 4.09 8.80 -40.82 -0.36 3.73 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.12 1.25 6.95 -51.93 -0.36 0.89 16 37 H 0.08 0.69 7.49 -51.93 -0.39 0.30 16 38 H 0.12 2.19 5.63 -52.49 -0.30 1.89 16 39 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 40 H 0.13 3.19 6.07 -52.48 -0.32 2.87 16 41 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 42 H 0.11 2.36 7.60 -52.48 -0.40 1.96 16 LS Contribution 343.07 15.07 5.17 5.17 Total: -1.00 -30.75 343.07 -9.42 -40.18 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -5.05 Total: 12.12 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: -2.35 Total: -27.28 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: -0.03 Total: -42.20 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -1.58 Total: -48.37 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Atomic # 16 Polarization: 48.40 SS G_CDS: -0.56 Total: 47.85 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.75 -9.42 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795100785.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.138 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds