Wall clock time and date at job start Tue Mar 31 2020 20:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.56902 * 2 1 4 4 C 1.50432 * 109.56900 * 120.23986 * 2 1 3 5 5 O 1.21276 * 118.49080 * 287.10992 * 4 2 1 6 6 N 1.33383 * 123.02445 * 107.09060 * 4 2 1 7 7 C 1.45648 * 124.58805 * 4.33658 * 6 4 2 8 8 C 1.52992 * 110.74090 * 338.12624 * 7 6 4 9 9 N 1.47049 * 109.56333 * 239.64652 * 2 1 3 10 10 S 1.65601 * 121.35704 * 102.93285 * 9 2 1 11 11 O 1.42092 * 106.40648 * 198.74461 * 10 9 2 12 12 O 1.42107 * 106.39716 * 331.66304 * 10 9 2 13 13 C 1.76197 * 107.21894 * 85.20166 * 10 9 2 14 14 C 1.38660 * 119.87649 * 269.73433 * 13 10 9 15 15 C 1.38617 * 120.49826 * 179.72420 * 14 13 10 16 16 C 1.37631 * 120.24770 * 0.54915 * 15 14 13 17 17 C 1.40696 * 119.74940 * 359.72289 * 16 15 14 18 18 C 1.41392 * 120.24528 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99455 * 155.24383 * 18 17 16 20 20 C 1.39940 * 120.00415 * 335.24254 * 18 17 16 21 21 N 1.30822 * 119.99671 * 344.96667 * 20 18 17 22 22 Si 1.86800 * 120.00287 * 164.96430 * 20 18 17 23 23 H 1.48505 * 109.46712 * 89.99893 * 22 20 18 24 24 H 1.48498 * 109.47393 * 210.00058 * 22 20 18 25 25 H 1.48497 * 109.46985 * 330.00310 * 22 20 18 26 26 C 1.37595 * 119.87784 * 90.00430 * 13 10 9 27 27 H 1.09003 * 109.46848 * 299.75960 * 1 2 3 28 28 H 1.09002 * 109.47424 * 59.75904 * 1 2 3 29 29 H 1.09000 * 109.47588 * 179.76324 * 1 2 3 30 30 H 1.08996 * 109.47089 * 188.47887 * 3 2 1 31 31 H 1.09001 * 109.46659 * 308.48148 * 3 2 1 32 32 H 1.09000 * 109.46761 * 68.47673 * 3 2 1 33 33 H 0.96996 * 117.70965 * 184.32017 * 6 4 2 34 34 H 1.09006 * 109.21344 * 98.43690 * 7 6 4 35 35 H 1.09002 * 109.22179 * 217.81146 * 7 6 4 36 36 H 1.08996 * 109.72295 * 166.37497 * 8 7 6 37 37 H 1.09000 * 109.71521 * 287.02840 * 8 7 6 38 38 H 1.07998 * 119.75067 * 359.97438 * 14 13 10 39 39 H 1.08001 * 119.87201 * 180.24874 * 15 14 13 40 40 H 1.08005 * 120.12340 * 179.70998 * 16 15 14 41 41 H 0.97002 * 119.99645 * 180.02562 * 21 20 18 42 42 H 1.08008 * 120.12412 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0425 1.4416 0.0000 4 6 2.0339 -0.7138 1.2245 5 8 1.9322 -0.1612 2.2993 6 7 2.5870 -1.9268 1.1828 7 6 2.8562 -2.6712 -0.0398 8 6 1.9728 -2.1709 -1.1843 9 7 2.0224 -0.7002 -1.1957 10 16 2.6092 0.1324 -2.5014 11 8 2.5766 -0.7687 -3.5996 12 8 1.9456 1.3890 -2.5071 13 6 4.3094 0.4689 -2.1843 14 6 4.6728 1.6414 -1.5394 15 6 6.0061 1.9165 -1.2783 16 6 6.9857 1.0316 -1.6676 17 6 6.6291 -0.1586 -2.3277 18 6 7.6269 -1.0753 -2.7318 19 1 7.3809 -2.1191 -2.8606 20 6 8.9330 -0.6303 -2.9647 21 7 9.1741 0.6484 -3.0992 22 14 10.3323 -1.8622 -3.0836 23 1 10.4928 -2.2941 -4.4954 24 1 11.5906 -1.2290 -2.6136 25 1 10.0257 -3.0427 -2.2366 26 6 5.2719 -0.4301 -2.5824 27 1 -0.3633 0.5101 0.8922 28 1 -0.3634 0.5176 -0.8878 29 1 -0.3634 -1.0276 -0.0042 30 1 3.1219 1.4435 -0.1515 31 1 1.5616 1.9981 -0.8045 32 1 1.8089 1.9102 0.9560 33 1 2.8271 -2.3423 2.0258 34 1 3.9038 -2.5447 -0.3135 35 1 2.6557 -3.7287 0.1324 36 1 2.3453 -2.5580 -2.1327 37 1 0.9463 -2.5029 -1.0286 38 1 3.9111 2.3437 -1.2346 39 1 6.2775 2.8310 -0.7718 40 1 8.0243 1.2502 -1.4673 41 1 10.0795 0.9568 -3.2611 42 1 4.9869 -1.3409 -3.0881 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795100785.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:29 Heat of formation + Delta-G solvation = -93.203403 kcal Electronic energy + Delta-G solvation = -28853.386547 eV Core-core repulsion = 24924.780846 eV Total energy + Delta-G solvation = -3928.605701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.66887 -39.49773 -38.58029 -38.07128 -36.96867 -36.10360 -35.68466 -32.82192 -31.96029 -31.63801 -29.35795 -28.53208 -27.25853 -25.30688 -23.93598 -23.59113 -22.83187 -20.93442 -19.88641 -19.27523 -18.59687 -18.50346 -17.77453 -17.31263 -16.98672 -16.80181 -16.42835 -16.40098 -15.68377 -15.37184 -15.25225 -15.05047 -14.69303 -14.37247 -14.27995 -13.88721 -13.78837 -13.47841 -13.42191 -13.21615 -13.19313 -13.11756 -13.04219 -12.88952 -12.83256 -12.64264 -12.50138 -12.34889 -11.99033 -11.92909 -11.49913 -11.48262 -11.15136 -11.05280 -10.21396 -10.02811 -9.82419 -9.53922 -8.70841 -6.45610 -0.63252 0.39182 0.82755 1.37885 1.44881 1.48306 1.52435 1.84087 2.17195 2.24361 2.55224 2.71990 3.27785 3.34173 3.50242 3.59305 3.79398 3.95002 4.03504 4.25767 4.31762 4.40136 4.50643 4.62308 4.69586 4.78330 4.80677 4.82463 4.88664 4.92316 4.97831 5.04473 5.19037 5.20509 5.35407 5.35720 5.42389 5.54197 5.82429 5.88340 5.93897 6.08441 6.22594 6.52442 6.80310 6.84196 7.11999 8.25883 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.004218 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.893996 B = 6635.912135 C = 6914.961806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.178 3.822 3 C -0.221 4.221 4 C 0.522 3.478 5 O -0.582 6.582 6 N -0.704 5.704 7 C 0.088 3.912 8 C 0.090 3.910 9 N -0.992 5.992 10 S 2.715 3.285 11 O -0.981 6.981 12 O -0.971 6.971 13 C -0.643 4.643 14 C -0.154 4.154 15 C -0.127 4.127 16 C -0.141 4.141 17 C 0.062 3.938 18 C -0.491 4.491 19 H 0.086 0.914 20 C 0.033 3.967 21 N -0.828 5.828 22 Si 0.985 3.015 23 H -0.263 1.263 24 H -0.268 1.268 25 H -0.254 1.254 26 C -0.137 4.137 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.122 0.878 32 H 0.092 0.908 33 H 0.407 0.593 34 H 0.062 0.938 35 H 0.135 0.865 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.136 0.864 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.290 0.710 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.723 -7.194 5.573 14.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.087 3.913 3 C -0.279 4.279 4 C 0.307 3.693 5 O -0.462 6.462 6 N -0.354 5.354 7 C -0.037 4.037 8 C -0.034 4.034 9 N -0.831 5.831 10 S 2.810 3.190 11 O -0.972 6.972 12 O -0.962 6.962 13 C -0.731 4.731 14 C -0.174 4.174 15 C -0.146 4.146 16 C -0.161 4.161 17 C 0.059 3.941 18 C -0.521 4.521 19 H 0.104 0.896 20 C -0.182 4.182 21 N -0.454 5.454 22 Si 0.805 3.195 23 H -0.188 1.188 24 H -0.193 1.193 25 H -0.178 1.178 26 C -0.158 4.158 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.141 0.859 32 H 0.111 0.889 33 H 0.243 0.757 34 H 0.080 0.920 35 H 0.153 0.847 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.154 0.846 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.101 0.899 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.120 -6.437 5.067 14.629 hybrid contribution 1.985 -0.257 0.480 2.058 sum -10.135 -6.693 5.547 13.353 Atomic orbital electron populations 1.22131 0.89658 1.04416 1.04474 1.20436 0.97392 0.92383 0.81052 1.23292 1.03512 0.93835 1.07265 1.20283 0.76903 0.81736 0.90372 1.90718 1.58808 1.65584 1.31099 1.45259 1.61340 1.17401 1.11425 1.22030 0.99930 0.98093 0.83622 1.22208 1.03373 0.76987 1.00831 1.58041 1.77054 1.16209 1.31824 1.01102 0.73259 0.72542 0.72120 1.93490 1.87618 1.65805 1.50261 1.93442 1.73652 1.42884 1.86200 1.30335 1.23316 1.04513 1.14944 1.20603 0.96583 0.96590 1.03620 1.21146 0.93387 0.99254 1.00853 1.21714 0.99017 0.96316 0.99092 1.18045 0.92523 0.93305 0.90218 1.19888 0.94040 0.96430 1.41701 0.89632 1.26804 1.02408 0.97640 0.91337 1.69820 1.23958 1.17022 1.34619 0.85151 0.76110 0.78518 0.79689 1.18773 1.19292 1.17772 1.20829 0.92945 0.99307 1.02737 0.89915 0.89982 0.89874 0.91163 0.85942 0.88898 0.75675 0.91979 0.84676 0.86352 0.86391 0.84614 0.86161 0.86832 0.89899 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.66 71.98 0.62 -2.37 16 2 C 0.18 4.66 0.93 2.67 0.00 4.66 16 3 C -0.22 -6.54 6.53 71.98 0.47 -6.07 16 4 C 0.52 14.39 6.61 87.79 0.58 14.97 16 5 O -0.58 -19.63 17.03 -3.02 -0.05 -19.68 16 6 N -0.70 -15.00 5.42 -467.08 -2.53 -17.53 16 7 C 0.09 1.50 7.34 86.54 0.64 2.14 16 8 C 0.09 1.69 6.41 86.25 0.55 2.25 16 9 N -0.99 -26.19 2.93 -473.40 -1.39 -27.58 16 10 S 2.71 94.46 5.18 -56.49 -0.29 94.17 16 11 O -0.98 -37.40 15.85 -128.00 -2.03 -39.42 16 12 O -0.97 -35.38 13.48 -128.00 -1.72 -37.11 16 13 C -0.64 -27.04 5.77 22.22 0.13 -26.91 16 14 C -0.15 -6.50 7.67 22.46 0.17 -6.33 16 15 C -0.13 -5.74 10.02 22.22 0.22 -5.51 16 16 C -0.14 -7.17 8.70 22.73 0.20 -6.97 16 17 C 0.06 3.21 5.58 -21.29 -0.12 3.09 16 18 C -0.49 -25.01 9.07 23.46 0.21 -24.79 16 19 H 0.09 4.10 7.89 -2.91 -0.02 4.07 16 20 C 0.03 1.58 5.20 85.26 0.44 2.02 16 21 N -0.83 -41.72 10.81 21.82 0.24 -41.48 16 22 Si 0.98 36.19 29.59 68.60 2.03 38.22 16 23 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 24 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 25 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 26 C -0.14 -6.38 9.26 22.73 0.21 -6.17 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.08 1.31 7.48 -2.39 -0.02 1.29 16 30 H 0.07 2.32 3.81 -2.39 -0.01 2.31 16 31 H 0.12 3.65 5.46 -2.39 -0.01 3.64 16 32 H 0.09 2.61 7.61 -2.39 -0.02 2.59 16 33 H 0.41 7.43 8.80 -92.71 -0.82 6.62 16 34 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.12 2.23 6.95 -2.39 -0.02 2.21 16 37 H 0.12 1.44 7.49 -2.39 -0.02 1.42 16 38 H 0.14 5.10 5.63 -2.91 -0.02 5.08 16 39 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 40 H 0.11 5.97 6.07 -2.91 -0.02 5.95 16 41 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 42 H 0.12 5.10 7.60 -2.91 -0.02 5.08 16 Total: -1.00 -68.01 343.07 -1.16 -69.17 By element: Atomic # 1 Polarization: 37.00 SS G_CDS: 0.26 Total: 37.26 kcal Atomic # 6 Polarization: -60.35 SS G_CDS: 4.33 Total: -56.02 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -3.69 Total: -86.60 kcal Atomic # 8 Polarization: -92.41 SS G_CDS: -3.80 Total: -96.21 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Atomic # 16 Polarization: 94.46 SS G_CDS: -0.29 Total: 94.17 kcal Total: -68.01 -1.16 -69.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795100785.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.036 kcal (2) G-P(sol) polarization free energy of solvation -68.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds