Wall clock time and date at job start Tue Mar 31 2020 20:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.56871 * 2 1 4 4 C 1.50435 * 109.56951 * 239.63910 * 2 1 3 5 5 O 1.21279 * 118.49084 * 47.44690 * 4 2 1 6 6 N 1.33388 * 123.02321 * 227.47092 * 4 2 1 7 7 C 1.45639 * 124.59231 * 4.32121 * 6 4 2 8 8 C 1.53471 * 110.73683 * 337.97867 * 7 6 4 9 9 N 1.47058 * 109.56783 * 120.23519 * 2 1 3 10 10 S 1.65597 * 121.35074 * 342.53602 * 9 2 1 11 11 O 1.42100 * 106.40514 * 174.68665 * 10 9 2 12 12 O 1.42103 * 106.40371 * 41.77138 * 10 9 2 13 13 C 1.76204 * 107.22012 * 288.23222 * 10 9 2 14 14 C 1.37636 * 120.12909 * 113.64407 * 13 10 9 15 15 C 1.38615 * 120.24738 * 179.74626 * 14 13 10 16 16 C 1.38656 * 120.49922 * 0.25287 * 15 14 13 17 17 C 1.37604 * 120.25244 * 0.02562 * 16 15 14 18 18 C 1.40700 * 120.12469 * 293.91195 * 13 10 9 19 19 C 1.41402 * 120.24455 * 0.02562 * 18 13 10 20 20 H 1.07993 * 119.99962 * 29.94378 * 19 18 13 21 21 C 1.39942 * 119.99701 * 209.94888 * 19 18 13 22 22 N 1.30823 * 120.00539 * 10.65973 * 21 19 18 23 23 Si 1.86806 * 119.99705 * 190.66652 * 21 19 18 24 24 H 1.48498 * 109.46977 * 89.99885 * 23 21 19 25 25 H 1.48503 * 109.46843 * 209.99714 * 23 21 19 26 26 H 1.48494 * 109.47118 * 329.99472 * 23 21 19 27 27 H 1.08998 * 109.46933 * 296.54459 * 1 2 3 28 28 H 1.08998 * 109.47100 * 56.54828 * 1 2 3 29 29 H 1.09004 * 109.47135 * 176.54500 * 1 2 3 30 30 H 1.08997 * 109.47322 * 180.23464 * 3 2 1 31 31 H 1.08999 * 109.46959 * 300.23631 * 3 2 1 32 32 H 1.09001 * 109.47185 * 60.23390 * 3 2 1 33 33 H 0.96998 * 117.69986 * 184.34097 * 6 4 2 34 34 H 1.08998 * 109.22391 * 98.42766 * 7 6 4 35 35 H 1.08996 * 109.21992 * 217.81246 * 7 6 4 36 36 H 1.09000 * 109.84955 * 287.31788 * 8 7 6 37 37 H 1.08998 * 109.84396 * 166.50453 * 8 7 6 38 38 H 1.08003 * 119.87812 * 0.02562 * 14 13 10 39 39 H 1.07991 * 119.75237 * 180.22874 * 15 14 13 40 40 H 1.08006 * 119.87529 * 179.97438 * 16 15 14 41 41 H 1.07993 * 120.13067 * 180.02562 * 17 16 15 42 42 H 0.97001 * 120.00400 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0425 1.4416 0.0000 4 6 2.0339 -0.7164 -1.2231 5 8 1.5485 -0.4365 -2.2986 6 7 2.9897 -1.6458 -1.1790 7 6 3.5987 -2.1482 0.0449 8 6 3.4267 -1.1414 1.1904 9 7 2.0225 -0.6977 1.1972 10 16 1.0400 -0.9674 2.5026 11 8 1.7891 -1.7626 3.4113 12 8 -0.2211 -1.3631 1.9807 13 6 0.7857 0.5864 3.2938 14 6 -0.4663 1.1580 3.3074 15 6 -0.6702 2.3777 3.9337 16 6 0.3828 3.0380 4.5481 17 6 1.6441 2.4880 4.5419 18 6 1.8629 1.2502 3.9091 19 6 3.1548 0.6755 3.8960 20 1 3.4553 0.0412 3.0753 21 6 4.0438 0.9286 4.9467 22 7 3.6198 1.5183 6.0348 23 14 5.8363 0.4247 4.7953 24 1 6.6149 1.5389 4.1976 25 1 6.3771 0.1094 6.1420 26 1 5.9415 -0.7749 3.9264 27 1 -0.3633 0.4593 0.9193 28 1 -0.3633 0.5665 -0.8574 29 1 -0.3633 -1.0258 -0.0619 30 1 3.1324 1.4398 -0.0042 31 1 1.6765 1.9573 -0.8879 32 1 1.6834 1.9549 0.8921 33 1 3.3012 -2.0125 -2.0212 34 1 3.1266 -3.0914 0.3197 35 1 4.6620 -2.3158 -0.1261 36 1 4.0823 -0.2851 1.0320 37 1 3.6664 -1.6180 2.1409 38 1 -1.2939 0.6522 2.8323 39 1 -1.6567 2.8171 3.9428 40 1 0.2126 3.9881 5.0328 41 1 2.4628 3.0039 5.0214 42 1 4.2362 1.6941 6.7629 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798228484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:34 Heat of formation + Delta-G solvation = -95.875833 kcal Electronic energy + Delta-G solvation = -29750.707815 eV Core-core repulsion = 25821.986228 eV Total energy + Delta-G solvation = -3928.721586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.62642 -39.37169 -38.32937 -38.02056 -36.66848 -36.10008 -35.61661 -32.78374 -32.00078 -31.31791 -29.26963 -28.36701 -27.31958 -25.26995 -23.87711 -23.35637 -22.92385 -20.73391 -19.58787 -19.07560 -18.78020 -18.42271 -17.80910 -17.29202 -16.97387 -16.52261 -16.30101 -16.00709 -15.77123 -15.30964 -15.06656 -14.91015 -14.59564 -14.45934 -14.30570 -13.69145 -13.65727 -13.39626 -13.30786 -13.12738 -13.10555 -12.92251 -12.86668 -12.78553 -12.75173 -12.67800 -12.38626 -12.25282 -12.07850 -11.73077 -11.61175 -11.17581 -11.12200 -10.98734 -10.16544 -9.94997 -9.74473 -9.37913 -8.73678 -6.56333 -0.28168 0.56154 1.00872 1.41644 1.48745 1.53853 1.57180 2.00594 2.19532 2.30590 2.68181 2.96606 3.35492 3.47227 3.61774 3.72083 3.86688 3.97950 4.07962 4.31287 4.35922 4.51971 4.56717 4.65092 4.69398 4.73639 4.78755 4.81344 4.93059 5.00497 5.03191 5.18534 5.23126 5.29844 5.32572 5.48769 5.56360 5.74257 5.86211 5.88742 6.03842 6.12490 6.20336 6.51256 6.72791 6.87673 7.13832 8.22505 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011715 B = 0.006897 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.520623 B = 4058.711626 C = 5287.961834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.175 3.825 3 C -0.148 4.148 4 C 0.530 3.470 5 O -0.578 6.578 6 N -0.702 5.702 7 C 0.097 3.903 8 C 0.083 3.917 9 N -0.993 5.993 10 S 2.713 3.287 11 O -0.987 6.987 12 O -0.999 6.999 13 C -0.787 4.787 14 C -0.016 4.016 15 C -0.249 4.249 16 C -0.077 4.077 17 C -0.182 4.182 18 C 0.166 3.834 19 C -0.475 4.475 20 H 0.106 0.894 21 C 0.038 3.962 22 N -0.813 5.813 23 Si 0.968 3.032 24 H -0.252 1.252 25 H -0.275 1.275 26 H -0.235 1.235 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.410 0.590 34 H 0.076 0.924 35 H 0.135 0.865 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.182 -2.609 -8.617 10.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.085 3.915 3 C -0.207 4.207 4 C 0.314 3.686 5 O -0.458 6.458 6 N -0.353 5.353 7 C -0.028 4.028 8 C -0.041 4.041 9 N -0.832 5.832 10 S 2.813 3.187 11 O -0.978 6.978 12 O -0.990 6.990 13 C -0.881 4.881 14 C -0.036 4.036 15 C -0.269 4.269 16 C -0.096 4.096 17 C -0.202 4.202 18 C 0.162 3.838 19 C -0.503 4.503 20 H 0.124 0.876 21 C -0.179 4.179 22 N -0.437 5.437 23 Si 0.787 3.213 24 H -0.177 1.177 25 H -0.199 1.199 26 H -0.158 1.158 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.248 0.752 34 H 0.095 0.905 35 H 0.153 0.847 36 H 0.116 0.884 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.602 -3.191 -8.455 10.141 hybrid contribution 0.563 0.669 0.549 1.032 sum 5.165 -2.522 -7.906 9.775 Atomic orbital electron populations 1.22466 0.90915 1.04724 1.04213 1.20391 0.95807 0.93450 0.81896 1.22087 1.02560 0.92488 1.03595 1.20045 0.79068 0.79579 0.89862 1.90709 1.58212 1.66229 1.30623 1.45210 1.38423 1.40225 1.11437 1.22072 1.01311 0.96474 0.82917 1.22302 0.81195 0.99533 1.01093 1.58052 1.23392 1.72555 1.29168 1.00690 0.71917 0.74299 0.71822 1.93465 1.72438 1.68919 1.62985 1.93496 1.43114 1.82895 1.79474 1.30142 1.00822 1.25829 1.31300 1.20534 0.94300 0.94488 0.94259 1.20854 0.99095 0.98429 1.08554 1.21224 0.93298 0.98693 0.96367 1.21558 0.96885 0.96886 1.04883 1.17294 0.91196 0.89624 0.85732 1.20362 0.97351 1.25641 1.06955 0.87606 1.26842 1.05469 0.92249 0.93373 1.69834 1.38880 1.30475 1.04515 0.85385 0.75375 0.80960 0.79619 1.17657 1.19946 1.15770 0.90979 0.89191 0.90625 0.90667 0.90014 0.91445 0.75225 0.90540 0.84713 0.88409 0.86865 0.86190 0.85852 0.86365 0.86987 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.58 6.65 71.98 0.48 -5.10 16 2 C 0.18 5.54 1.01 2.67 0.00 5.54 16 3 C -0.15 -4.37 8.67 71.98 0.62 -3.75 16 4 C 0.53 15.69 6.61 87.79 0.58 16.28 16 5 O -0.58 -20.02 17.26 -3.02 -0.05 -20.07 16 6 N -0.70 -15.30 5.42 -466.30 -2.53 -17.83 16 7 C 0.10 1.80 7.35 86.70 0.64 2.44 16 8 C 0.08 2.21 4.57 86.39 0.39 2.60 16 9 N -0.99 -33.07 2.71 -472.29 -1.28 -34.35 16 10 S 2.71 113.46 4.50 -56.49 -0.25 113.20 16 11 O -0.99 -46.16 14.93 -128.00 -1.91 -48.07 16 12 O -1.00 -43.04 12.77 -128.00 -1.63 -44.68 16 13 C -0.79 -35.86 5.66 22.73 0.13 -35.73 16 14 C -0.02 -0.70 8.36 22.22 0.19 -0.51 16 15 C -0.25 -10.21 10.05 22.46 0.23 -9.99 16 16 C -0.08 -3.29 10.02 22.22 0.22 -3.07 16 17 C -0.18 -8.73 8.66 22.73 0.20 -8.53 16 18 C 0.17 8.06 5.54 -21.29 -0.12 7.94 16 19 C -0.48 -22.09 7.57 23.46 0.18 -21.92 16 20 H 0.11 4.38 3.34 -2.91 -0.01 4.37 16 21 C 0.04 1.73 5.25 85.26 0.45 2.17 16 22 N -0.81 -38.93 10.90 21.83 0.24 -38.69 16 23 Si 0.97 32.97 29.57 68.60 2.03 35.00 16 24 H -0.25 -8.05 7.11 99.48 0.71 -7.34 16 25 H -0.27 -9.36 7.11 99.48 0.71 -8.66 16 26 H -0.24 -7.26 7.11 99.48 0.71 -6.55 16 27 H 0.07 2.57 4.40 -2.39 -0.01 2.56 16 28 H 0.09 2.76 7.99 -2.39 -0.02 2.74 16 29 H 0.07 2.72 6.82 -2.38 -0.02 2.70 16 30 H 0.07 1.99 7.49 -2.39 -0.02 1.97 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.41 7.01 8.80 -92.71 -0.82 6.20 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.10 2.29 7.39 -2.39 -0.02 2.27 16 37 H 0.11 3.26 6.02 -2.39 -0.01 3.24 16 38 H 0.12 4.78 6.85 -2.91 -0.02 4.76 16 39 H 0.12 4.27 8.06 -2.92 -0.02 4.24 16 40 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 41 H 0.11 5.53 6.29 -2.91 -0.02 5.51 16 42 H 0.29 12.67 8.30 -92.71 -0.77 11.90 16 Total: -1.00 -64.86 337.74 -0.94 -65.81 By element: Atomic # 1 Polarization: 41.04 SS G_CDS: 0.27 Total: 41.31 kcal Atomic # 6 Polarization: -55.81 SS G_CDS: 4.19 Total: -51.62 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -3.57 Total: -90.87 kcal Atomic # 8 Polarization: -109.22 SS G_CDS: -3.60 Total: -112.82 kcal Atomic # 14 Polarization: 32.97 SS G_CDS: 2.03 Total: 35.00 kcal Atomic # 16 Polarization: 113.46 SS G_CDS: -0.25 Total: 113.20 kcal Total: -64.86 -0.94 -65.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798228484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.071 kcal (2) G-P(sol) polarization free energy of solvation -64.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds