Wall clock time and date at job start Tue Mar 31 2020 20:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47212 * 2 1 4 4 C 1.47199 * 109.46954 * 240.00351 * 2 1 3 5 5 N 2.60807 * 109.46915 * 240.00268 * 2 1 3 6 6 C 1.53002 * 109.47186 * 120.00167 * 2 1 3 7 7 C 1.52994 * 109.47169 * 299.99788 * 6 2 1 8 8 S 1.81401 * 109.47139 * 179.97438 * 7 6 2 9 9 O 1.42107 * 110.53960 * 73.27082 * 8 7 6 10 10 O 1.42099 * 110.54398 * 296.52225 * 8 7 6 11 11 N 1.65600 * 104.45135 * 184.89591 * 8 7 6 12 12 C 1.39670 * 119.99952 * 62.86338 * 11 8 7 13 13 C 1.39003 * 120.04231 * 74.93086 * 12 11 8 14 14 C 1.38147 * 120.06716 * 180.02562 * 13 12 11 15 15 C 1.38184 * 120.14075 * 359.72064 * 14 13 12 16 16 C 1.38912 * 120.07277 * 0.55522 * 15 14 13 17 17 O 1.35748 * 120.02797 * 179.71769 * 16 15 14 18 18 C 1.34835 * 117.00233 * 174.26805 * 17 16 15 19 19 H 1.07998 * 119.99549 * 5.07835 * 18 17 16 20 20 C 1.38651 * 119.99830 * 185.07002 * 18 17 16 21 21 N 1.31551 * 120.00634 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99714 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46987 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47091 * 120.00116 * 22 20 18 25 25 H 1.48496 * 109.47396 * 240.00634 * 22 20 18 26 26 C 1.38758 * 119.94427 * 359.44755 * 16 15 14 27 27 H 1.09005 * 109.47002 * 299.99857 * 1 2 3 28 28 H 1.08997 * 109.47413 * 59.99661 * 1 2 3 29 29 H 1.09005 * 109.47388 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47012 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47208 * 300.00464 * 3 2 1 32 32 H 1.08999 * 109.46619 * 60.00260 * 3 2 1 33 33 H 1.08997 * 109.46782 * 179.97438 * 6 2 1 34 34 H 1.09002 * 109.46827 * 60.00096 * 6 2 1 35 35 H 1.09005 * 109.47155 * 60.00051 * 7 6 2 36 36 H 1.08990 * 109.47313 * 300.00339 * 7 6 2 37 37 H 0.97001 * 119.99766 * 242.87127 * 11 8 7 38 38 H 1.08006 * 119.96619 * 359.97438 * 13 12 11 39 39 H 1.07998 * 119.93119 * 180.02562 * 14 13 12 40 40 H 1.07997 * 119.95807 * 180.29698 * 15 14 13 41 41 H 0.96998 * 120.00220 * 179.97438 * 21 20 18 42 42 H 1.08005 * 120.07677 * 180.25094 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6938 -1.2019 5 7 2.3992 -1.2294 -2.1296 6 6 2.0400 -0.7213 1.2492 7 6 1.5301 -0.0001 2.4985 8 16 2.1341 -0.8557 3.9796 9 8 3.5215 -0.6109 4.1658 10 8 1.6078 -2.1741 4.0433 11 7 1.4070 -0.0643 5.2394 12 6 0.0156 -0.0740 5.3604 13 6 -0.6363 -1.2186 5.8044 14 6 -2.0126 -1.2289 5.9238 15 6 -2.7449 -0.1005 5.6080 16 6 -2.0999 1.0447 5.1583 17 8 -2.8207 2.1509 4.8429 18 6 -2.1278 3.2637 4.5273 19 1 -1.0510 3.2264 4.4532 20 6 -2.7977 4.4557 4.2979 21 7 -4.1093 4.5013 4.3885 22 14 -1.8378 5.9973 3.8600 23 1 -0.3869 5.6827 3.8215 24 1 -2.2726 6.4896 2.5281 25 1 -2.0905 7.0448 4.8818 26 6 -0.7177 1.0587 5.0371 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 3.1300 -0.7216 1.2489 34 1 1.6766 -1.7490 1.2491 35 1 0.4400 -0.0001 2.4985 36 1 1.8933 1.0275 2.4985 37 1 1.9475 0.4061 5.8933 38 1 -0.0664 -2.1010 6.0555 39 1 -2.5168 -2.1193 6.2693 40 1 -3.8203 -0.1103 5.7069 41 1 -4.5779 5.3353 4.2284 42 1 -0.2137 1.9493 4.6916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844650234.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:36 Heat of formation + Delta-G solvation = -54.230348 kcal Electronic energy + Delta-G solvation = -27270.317598 eV Core-core repulsion = 23343.401895 eV Total energy + Delta-G solvation = -3926.915703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.33936 -38.84443 -37.28049 -36.90156 -35.97762 -35.70386 -34.30670 -32.37079 -31.05738 -29.32039 -28.44581 -27.69355 -25.65413 -25.43834 -22.10078 -21.78834 -21.60527 -19.33310 -18.33061 -17.99945 -17.77199 -17.19438 -16.15852 -16.06090 -15.51505 -15.18608 -15.03523 -14.86315 -14.61572 -14.27937 -14.15227 -13.78632 -13.76559 -13.23331 -13.20158 -12.78895 -12.70202 -12.61328 -12.48637 -12.25600 -12.10360 -12.01436 -11.90991 -11.67385 -11.64206 -11.58791 -11.44416 -11.24801 -11.13033 -11.04153 -10.95300 -10.64563 -10.55569 -9.73498 -9.62762 -8.98705 -8.29556 -7.44420 -6.59314 -4.19846 0.15942 1.82086 2.16556 2.48648 2.53087 2.67336 3.00986 3.03099 3.08366 3.44396 3.72497 3.82567 4.13330 4.29770 4.30410 4.39876 4.44796 4.72741 4.80594 4.92114 5.11001 5.14055 5.34670 5.37393 5.40347 5.47335 5.53625 5.59645 5.62076 5.65561 5.79178 5.89884 5.95012 6.01016 6.11978 6.43505 6.57443 6.86064 7.01458 7.06937 7.13572 7.25587 7.29545 7.62641 7.83678 8.85876 9.53586 10.58142 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.008631 B = 0.004522 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3243.273631 B = 6190.500062 C = 7993.557538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 C -0.150 4.150 4 C 0.217 3.783 5 N -0.434 5.434 6 C -0.099 4.099 7 C -0.637 4.637 8 S 2.609 3.391 9 O -0.963 6.963 10 O -0.945 6.945 11 N -1.060 6.060 12 C 0.154 3.846 13 C -0.191 4.191 14 C -0.071 4.071 15 C -0.180 4.180 16 C 0.156 3.844 17 O -0.173 6.173 18 C -0.396 4.396 19 H 0.093 0.907 20 C 0.042 3.958 21 N -0.858 5.858 22 Si 0.938 3.062 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.233 4.233 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.420 0.580 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.271 0.729 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.078 -5.441 -2.894 10.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 C -0.208 4.208 4 C -0.101 4.101 5 N -0.108 5.108 6 C -0.139 4.139 7 C -0.765 4.765 8 S 2.703 3.297 9 O -0.953 6.953 10 O -0.935 6.935 11 N -0.815 5.815 12 C 0.060 3.940 13 C -0.213 4.213 14 C -0.090 4.090 15 C -0.199 4.199 16 C 0.102 3.898 17 O -0.076 6.076 18 C -0.472 4.472 19 H 0.110 0.890 20 C -0.163 4.163 21 N -0.492 5.492 22 Si 0.763 3.237 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.256 4.256 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.168 0.832 36 H 0.162 0.838 37 H 0.258 0.742 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.081 0.919 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.765 -6.852 -4.405 12.716 hybrid contribution 0.168 1.851 0.164 1.866 sum 9.932 -5.001 -4.241 11.901 Atomic orbital electron populations 1.22047 0.90582 1.03838 1.04493 1.18174 0.97477 0.94804 0.85553 1.22030 1.01971 0.92521 1.04302 1.29106 0.93194 0.93448 0.94392 1.81216 1.09023 1.09259 1.11341 1.21340 1.01891 0.99852 0.90820 1.30738 1.14838 1.14594 1.16375 1.05121 0.73666 0.75269 0.75630 1.93598 1.30744 1.86182 1.84778 1.93611 1.80190 1.34396 1.85332 1.52993 1.13112 1.72835 1.42549 1.16982 0.80648 0.94527 1.01813 1.20975 0.94738 0.98361 1.07228 1.20615 0.93195 0.96945 0.98254 1.20404 1.00132 0.92311 1.07094 1.19174 0.89696 0.88758 0.92213 1.84018 1.33817 1.16111 1.73695 1.21326 0.91904 0.85032 1.48907 0.88987 1.25274 0.95920 0.98377 0.96708 1.70030 1.06771 1.27569 1.44813 0.85700 0.79130 0.80379 0.78533 1.19058 1.20076 1.20082 1.21338 0.94129 0.99255 1.10830 0.89262 0.91218 0.91257 0.91432 0.91191 0.89574 0.89533 0.89043 0.83214 0.83788 0.74193 0.86203 0.86226 0.86079 0.91908 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.08 37.16 0.30 -0.99 16 2 C 0.04 0.38 0.72 -157.30 -0.11 0.27 16 3 C -0.15 -1.11 8.08 37.16 0.30 -0.81 16 4 C 0.22 2.35 13.86 -20.76 -0.29 2.07 16 5 N -0.43 -5.82 18.54 42.16 0.78 -5.04 16 6 C -0.10 -0.85 4.23 -26.73 -0.11 -0.97 16 7 C -0.64 -5.84 5.27 37.15 0.20 -5.65 16 8 S 2.61 31.56 5.43 -107.50 -0.58 30.98 16 9 O -0.96 -13.56 18.08 -57.54 -1.04 -14.60 16 10 O -0.95 -14.18 16.93 -57.54 -0.97 -15.15 16 11 N -1.06 -13.37 5.60 32.40 0.18 -13.18 16 12 C 0.15 2.38 5.66 -83.81 -0.47 1.91 16 13 C -0.19 -3.02 9.24 -39.33 -0.36 -3.38 16 14 C -0.07 -1.11 10.03 -39.63 -0.40 -1.51 16 15 C -0.18 -3.27 9.99 -39.35 -0.39 -3.66 16 16 C 0.16 3.23 6.64 -39.14 -0.26 2.97 16 17 O -0.17 -4.36 9.76 0.04 0.00 -4.36 16 18 C -0.40 -9.75 9.49 30.88 0.29 -9.46 16 19 H 0.09 2.04 5.20 -52.49 -0.27 1.76 16 20 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -23.20 13.67 55.48 0.76 -22.44 16 22 Si 0.94 18.54 29.55 -169.99 -5.02 13.52 16 23 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 24 H -0.28 -5.37 7.11 56.52 0.40 -4.96 16 25 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 26 C -0.23 -4.13 9.09 -39.20 -0.36 -4.49 16 27 H 0.09 0.77 6.43 -51.93 -0.33 0.43 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.58 6.43 -51.93 -0.33 0.25 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.15 1.37 6.41 -51.92 -0.33 1.04 16 36 H 0.14 1.02 6.43 -51.93 -0.33 0.68 16 37 H 0.42 4.51 8.92 -34.47 -0.31 4.21 16 38 H 0.12 1.80 7.78 -52.48 -0.41 1.39 16 39 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 41 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 42 H 0.13 2.30 5.64 -52.48 -0.30 2.00 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -32.87 371.24 -7.21 -40.08 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.14 Total: 7.35 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -1.77 Total: -22.74 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 1.72 Total: -40.66 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -2.01 Total: -34.11 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.52 kcal Atomic # 16 Polarization: 31.56 SS G_CDS: -0.58 Total: 30.98 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.87 -7.21 -40.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844650234.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.151 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds