Wall clock time and date at job start Tue Mar 31 2020 20:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47212 * 2 1 4 4 C 1.47199 * 109.46954 * 240.00351 * 2 1 3 5 5 N 2.60807 * 109.46915 * 240.00268 * 2 1 3 6 6 C 1.53002 * 109.47186 * 120.00167 * 2 1 3 7 7 C 1.52994 * 109.47169 * 299.99788 * 6 2 1 8 8 S 1.81401 * 109.47139 * 179.97438 * 7 6 2 9 9 O 1.42107 * 110.53960 * 73.27082 * 8 7 6 10 10 O 1.42099 * 110.54398 * 296.52225 * 8 7 6 11 11 N 1.65600 * 104.45135 * 184.89591 * 8 7 6 12 12 C 1.39670 * 119.99952 * 62.86338 * 11 8 7 13 13 C 1.39003 * 120.04231 * 74.93086 * 12 11 8 14 14 C 1.38147 * 120.06716 * 180.02562 * 13 12 11 15 15 C 1.38184 * 120.14075 * 359.72064 * 14 13 12 16 16 C 1.38912 * 120.07277 * 0.55522 * 15 14 13 17 17 O 1.35748 * 120.02797 * 179.71769 * 16 15 14 18 18 C 1.34835 * 117.00233 * 174.26805 * 17 16 15 19 19 H 1.07998 * 119.99549 * 5.07835 * 18 17 16 20 20 C 1.38651 * 119.99830 * 185.07002 * 18 17 16 21 21 N 1.31551 * 120.00634 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99714 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46987 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47091 * 120.00116 * 22 20 18 25 25 H 1.48496 * 109.47396 * 240.00634 * 22 20 18 26 26 C 1.38758 * 119.94427 * 359.44755 * 16 15 14 27 27 H 1.09005 * 109.47002 * 299.99857 * 1 2 3 28 28 H 1.08997 * 109.47413 * 59.99661 * 1 2 3 29 29 H 1.09005 * 109.47388 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47012 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47208 * 300.00464 * 3 2 1 32 32 H 1.08999 * 109.46619 * 60.00260 * 3 2 1 33 33 H 1.08997 * 109.46782 * 179.97438 * 6 2 1 34 34 H 1.09002 * 109.46827 * 60.00096 * 6 2 1 35 35 H 1.09005 * 109.47155 * 60.00051 * 7 6 2 36 36 H 1.08990 * 109.47313 * 300.00339 * 7 6 2 37 37 H 0.97001 * 119.99766 * 242.87127 * 11 8 7 38 38 H 1.08006 * 119.96619 * 359.97438 * 13 12 11 39 39 H 1.07998 * 119.93119 * 180.02562 * 14 13 12 40 40 H 1.07997 * 119.95807 * 180.29698 * 15 14 13 41 41 H 0.96998 * 120.00220 * 179.97438 * 21 20 18 42 42 H 1.08005 * 120.07677 * 180.25094 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6938 -1.2019 5 7 2.3992 -1.2294 -2.1296 6 6 2.0400 -0.7213 1.2492 7 6 1.5301 -0.0001 2.4985 8 16 2.1341 -0.8557 3.9796 9 8 3.5215 -0.6109 4.1658 10 8 1.6078 -2.1741 4.0433 11 7 1.4070 -0.0643 5.2394 12 6 0.0156 -0.0740 5.3604 13 6 -0.6363 -1.2186 5.8044 14 6 -2.0126 -1.2289 5.9238 15 6 -2.7449 -0.1005 5.6080 16 6 -2.0999 1.0447 5.1583 17 8 -2.8207 2.1509 4.8429 18 6 -2.1278 3.2637 4.5273 19 1 -1.0510 3.2264 4.4532 20 6 -2.7977 4.4557 4.2979 21 7 -4.1093 4.5013 4.3885 22 14 -1.8378 5.9973 3.8600 23 1 -0.3869 5.6827 3.8215 24 1 -2.2726 6.4896 2.5281 25 1 -2.0905 7.0448 4.8818 26 6 -0.7177 1.0587 5.0371 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 3.1300 -0.7216 1.2489 34 1 1.6766 -1.7490 1.2491 35 1 0.4400 -0.0001 2.4985 36 1 1.8933 1.0275 2.4985 37 1 1.9475 0.4061 5.8933 38 1 -0.0664 -2.1010 6.0555 39 1 -2.5168 -2.1193 6.2693 40 1 -3.8203 -0.1103 5.7069 41 1 -4.5779 5.3353 4.2284 42 1 -0.2137 1.9493 4.6916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844650234.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:35 Heat of formation + Delta-G solvation = -76.595754 kcal Electronic energy + Delta-G solvation = -27271.287434 eV Core-core repulsion = 23343.401895 eV Total energy + Delta-G solvation = -3927.885539 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.81608 -39.59503 -38.66270 -38.08080 -37.04634 -36.58990 -35.57373 -34.11452 -31.80589 -30.73166 -29.82071 -28.30342 -27.20046 -26.34519 -23.40906 -23.03845 -22.64459 -20.41178 -19.75787 -19.20174 -19.00698 -18.13217 -17.36170 -16.99675 -16.67976 -16.54419 -16.13813 -15.86960 -15.75597 -15.62992 -15.41732 -14.98428 -14.60707 -14.56860 -14.33789 -13.95378 -13.67596 -13.52120 -13.50820 -13.41681 -13.23679 -13.10816 -12.91879 -12.81828 -12.62633 -12.49563 -12.41770 -12.36412 -12.29835 -12.28117 -12.02124 -11.79940 -11.53910 -11.26241 -10.88504 -10.70854 -9.62314 -8.97491 -8.38097 -6.05641 -0.81797 0.47359 0.74996 1.44426 1.50735 1.60058 1.60544 1.67844 1.68942 2.23672 2.61388 2.81423 2.85808 3.19984 3.25267 3.57844 3.58625 3.68065 3.72506 4.03482 4.06010 4.22063 4.28839 4.43868 4.49466 4.56441 4.68513 4.73676 4.75987 4.78369 4.92604 4.97522 5.00930 5.11598 5.20655 5.29512 5.33620 5.36646 5.65724 5.68449 5.72622 5.98273 6.09775 6.30222 6.45479 7.07715 7.87346 8.84679 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.008631 B = 0.004522 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3243.273631 B = 6190.500062 C = 7993.557538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.052 3.948 3 C -0.155 4.155 4 C 0.239 3.761 5 N -0.482 5.482 6 C -0.108 4.108 7 C -0.623 4.623 8 S 2.617 3.383 9 O -0.981 6.981 10 O -0.976 6.976 11 N -1.057 6.057 12 C 0.166 3.834 13 C -0.185 4.185 14 C -0.061 4.061 15 C -0.191 4.191 16 C 0.126 3.874 17 O -0.226 6.226 18 C -0.405 4.405 19 H 0.112 0.888 20 C -0.020 4.020 21 N -0.920 5.920 22 Si 1.008 2.992 23 H -0.241 1.241 24 H -0.273 1.273 25 H -0.279 1.279 26 C -0.226 4.226 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.154 0.846 36 H 0.172 0.828 37 H 0.430 0.570 38 H 0.135 0.865 39 H 0.154 0.846 40 H 0.119 0.881 41 H 0.270 0.730 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.245 -5.724 -2.833 12.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 C -0.213 4.213 4 C -0.078 4.078 5 N -0.157 5.157 6 C -0.148 4.148 7 C -0.754 4.754 8 S 2.715 3.285 9 O -0.971 6.971 10 O -0.966 6.966 11 N -0.812 5.812 12 C 0.072 3.928 13 C -0.206 4.206 14 C -0.079 4.079 15 C -0.211 4.211 16 C 0.075 3.925 17 O -0.132 6.132 18 C -0.481 4.481 19 H 0.129 0.871 20 C -0.217 4.217 21 N -0.558 5.558 22 Si 0.828 3.172 23 H -0.164 1.164 24 H -0.199 1.199 25 H -0.205 1.205 26 C -0.248 4.248 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.172 0.828 36 H 0.190 0.810 37 H 0.270 0.730 38 H 0.153 0.847 39 H 0.172 0.828 40 H 0.137 0.863 41 H 0.079 0.921 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.991 -7.201 -4.292 14.631 hybrid contribution -0.403 1.640 0.210 1.702 sum 11.588 -5.561 -4.082 13.486 Atomic orbital electron populations 1.22105 0.90559 1.03983 1.04793 1.18256 0.97359 0.95354 0.84360 1.22126 1.02714 0.91414 1.05072 1.29501 0.91894 0.92312 0.94119 1.81240 1.10677 1.10868 1.12909 1.21471 1.02974 1.00014 0.90329 1.30628 1.14995 1.15607 1.14210 1.04760 0.73010 0.74679 0.76064 1.93578 1.31816 1.86335 1.85380 1.93572 1.80467 1.36580 1.86024 1.52930 1.11754 1.72924 1.43632 1.16900 0.81825 0.93608 1.00475 1.21350 0.95018 0.98799 1.05424 1.20964 0.93215 0.97088 0.96659 1.20620 1.00503 0.92608 1.07327 1.19648 0.91088 0.88408 0.93398 1.84001 1.35443 1.17369 1.76391 1.21869 0.92887 0.85289 1.48062 0.87065 1.26447 0.96796 1.01714 0.96789 1.70183 1.08927 1.28371 1.48349 0.84662 0.78931 0.75709 0.77863 1.16352 1.19858 1.20510 1.21383 0.93079 1.00159 1.10223 0.89093 0.90848 0.91283 0.90470 0.90873 0.88464 0.88102 0.88797 0.82834 0.81048 0.73014 0.84707 0.82792 0.86294 0.92139 0.84289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 8.08 71.98 0.58 -1.76 16 2 C 0.05 0.75 0.72 -53.99 -0.04 0.71 16 3 C -0.16 -1.80 8.08 71.98 0.58 -1.22 16 4 C 0.24 4.81 13.86 89.44 1.24 6.05 16 5 N -0.48 -12.52 18.54 20.01 0.37 -12.15 16 6 C -0.11 -1.55 4.23 30.59 0.13 -1.42 16 7 C -0.62 -9.42 5.27 71.98 0.38 -9.04 16 8 S 2.62 56.24 5.43 -56.49 -0.31 55.93 16 9 O -0.98 -25.06 18.08 -127.65 -2.31 -27.37 16 10 O -0.98 -27.00 16.93 -127.65 -2.16 -29.16 16 11 N -1.06 -23.58 5.60 -51.41 -0.29 -23.87 16 12 C 0.17 4.71 5.66 38.20 0.22 4.92 16 13 C -0.18 -5.25 9.24 22.43 0.21 -5.05 16 14 C -0.06 -1.74 10.03 22.24 0.22 -1.52 16 15 C -0.19 -6.82 9.99 22.42 0.22 -6.60 16 16 C 0.13 5.19 6.64 22.56 0.15 5.34 16 17 O -0.23 -11.71 9.76 -22.77 -0.22 -11.93 16 18 C -0.41 -20.18 9.49 67.92 0.64 -19.53 16 19 H 0.11 4.81 5.20 -2.91 -0.02 4.79 16 20 C -0.02 -0.99 5.49 84.83 0.47 -0.53 16 21 N -0.92 -51.91 13.67 21.61 0.30 -51.62 16 22 Si 1.01 37.80 29.55 68.60 2.03 39.83 16 23 H -0.24 -7.87 7.11 99.48 0.71 -7.16 16 24 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 25 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 26 C -0.23 -7.65 9.09 22.52 0.20 -7.44 16 27 H 0.09 1.36 6.43 -2.38 -0.02 1.34 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 0.93 6.43 -2.39 -0.02 0.92 16 33 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.15 2.35 6.41 -2.39 -0.02 2.33 16 36 H 0.17 1.69 6.43 -2.40 -0.02 1.68 16 37 H 0.43 7.99 8.92 -96.75 -0.86 7.12 16 38 H 0.14 3.54 7.78 -2.91 -0.02 3.52 16 39 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 40 H 0.12 4.22 8.06 -2.91 -0.02 4.19 16 41 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 42 H 0.14 4.49 5.64 -2.91 -0.02 4.47 16 Total: -1.00 -73.43 371.24 2.82 -70.61 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.21 Total: 26.82 kcal Atomic # 6 Polarization: -42.29 SS G_CDS: 5.21 Total: -37.08 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: 0.38 Total: -87.64 kcal Atomic # 8 Polarization: -63.78 SS G_CDS: -4.69 Total: -68.47 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Atomic # 16 Polarization: 56.24 SS G_CDS: -0.31 Total: 55.93 kcal Total: -73.43 2.82 -70.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844650234.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.989 kcal (2) G-P(sol) polarization free energy of solvation -73.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds