Wall clock time and date at job start Tue Mar 31 2020 20:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 119.99765 * 2 1 4 4 N 1.46493 * 109.46816 * 125.00415 * 3 2 1 5 5 C 1.46501 * 119.99926 * 266.72312 * 4 3 2 6 6 C 1.50698 * 109.47337 * 270.00286 * 5 4 3 7 7 H 1.07998 * 120.00194 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00155 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99770 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00110 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46879 * 89.99837 * 10 8 6 12 12 H 1.48503 * 109.46767 * 209.99693 * 10 8 6 13 13 H 1.48494 * 109.46776 * 329.99811 * 10 8 6 14 14 C 1.34778 * 120.00647 * 86.72880 * 4 3 2 15 15 O 1.21689 * 119.99641 * 1.99356 * 14 4 3 16 16 C 1.46673 * 120.00334 * 182.00304 * 14 4 3 17 17 C 1.35665 * 126.13300 * 160.55264 * 16 14 4 18 18 N 1.30945 * 114.19390 * 179.97438 * 17 16 14 19 19 C 1.29427 * 117.36498 * 0.02562 * 18 17 16 20 20 C 1.50699 * 124.80710 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.50173 * 300.40164 * 20 19 18 22 22 O 1.43361 * 109.63504 * 60.71596 * 20 19 18 23 23 C 1.44197 * 107.28796 * 120.55121 * 22 20 19 24 24 C 1.54920 * 103.22942 * 21.35007 * 23 22 20 25 25 O 1.43755 * 109.63217 * 180.08833 * 20 19 18 26 26 S 1.70961 * 110.38941 * 0.25723 * 19 18 17 27 27 H 1.08001 * 119.99964 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.99931 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.99788 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47431 * 5.00135 * 3 2 1 31 31 H 1.09005 * 109.46996 * 244.99748 * 3 2 1 32 32 H 1.09006 * 109.47167 * 30.00114 * 5 4 3 33 33 H 1.09003 * 109.47466 * 149.99688 * 5 4 3 34 34 H 0.97001 * 119.99911 * 180.02562 * 9 8 6 35 35 H 1.07997 * 122.90249 * 0.03563 * 17 16 14 36 36 H 1.08999 * 109.47223 * 179.62102 * 21 20 19 37 37 H 1.09003 * 109.47348 * 299.61867 * 21 20 19 38 38 H 1.09001 * 109.47587 * 59.61737 * 21 20 19 39 39 H 1.08994 * 110.69815 * 139.83246 * 23 22 20 40 40 H 1.08998 * 110.69698 * 262.87078 * 23 22 20 41 41 H 1.09004 * 110.97136 * 82.63682 * 24 23 22 42 42 H 1.08998 * 110.97882 * 206.41744 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3319 1.1313 5 6 2.5825 1.9301 2.4038 6 6 2.9328 3.3958 2.4064 7 1 3.4141 3.8375 1.5463 8 6 2.6389 4.1730 3.5067 9 7 2.0524 3.6353 4.5538 10 14 3.0725 5.9900 3.5095 11 1 1.9338 6.7714 2.9635 12 1 3.3532 6.4297 4.8999 13 1 4.2751 6.2132 2.6674 14 6 4.2280 0.8062 1.0016 15 8 4.5825 0.3421 -0.0659 16 6 5.1438 0.7934 2.1472 17 6 6.2347 -0.0003 2.2905 18 7 6.8888 0.1834 3.4099 19 6 6.4303 1.0762 4.2272 20 6 7.0487 1.4237 5.5568 21 6 7.0798 0.1792 6.4464 22 8 8.3838 1.9056 5.3559 23 6 8.4411 3.2439 5.8898 24 6 7.2490 3.2826 6.8784 25 8 6.2753 2.4540 6.1946 26 16 5.0202 1.8010 3.5876 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 1.5059 1.8137 2.5290 33 1 3.0996 1.4315 3.2237 34 1 1.8453 4.1821 5.3278 35 1 6.5381 -0.7206 1.5452 36 1 7.5333 0.4295 7.4055 37 1 6.0626 -0.1778 6.6076 38 1 7.6657 -0.6007 5.9599 39 1 9.3821 3.4094 6.4145 40 1 8.3086 3.9807 5.0976 41 1 7.5244 2.8470 7.8389 42 1 6.8796 4.3003 7.0047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861803092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:38 Heat of formation + Delta-G solvation = -41.607895 kcal Electronic energy + Delta-G solvation = -27960.014310 eV Core-core repulsion = 24033.645958 eV Total energy + Delta-G solvation = -3926.368352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.55325 -39.44155 -38.39678 -35.54122 -34.99252 -33.72818 -32.44439 -32.24605 -29.46677 -28.44521 -27.75929 -26.29957 -24.91346 -23.35997 -23.16125 -22.10380 -20.65449 -19.46352 -18.60887 -17.67587 -17.11644 -16.76847 -16.51389 -16.06811 -15.56459 -15.26464 -14.79852 -14.64049 -14.57745 -14.32932 -13.89557 -13.79740 -13.36709 -13.13061 -12.83940 -12.74796 -12.67076 -12.43148 -12.20943 -12.07527 -11.87367 -11.55666 -11.45874 -11.17084 -10.99183 -10.95547 -10.48515 -10.39700 -10.20832 -10.04061 -9.97215 -9.45574 -9.07463 -8.94878 -8.62123 -8.58203 -8.17283 -7.84058 -6.38368 -4.44964 0.91632 2.03215 2.46767 2.57388 3.05453 3.11560 3.19264 3.23225 3.38787 3.78029 3.86494 3.93580 4.19275 4.51204 4.64603 4.85402 4.95548 5.02158 5.18772 5.22238 5.35418 5.36130 5.42755 5.52718 5.56887 5.71439 5.82408 5.84371 5.88780 6.01963 6.13220 6.18664 6.26195 6.45512 6.65869 6.85897 6.88931 7.00163 7.08819 7.33308 7.55886 7.75235 8.08103 8.29611 8.56881 8.81266 9.19029 10.66216 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.010941 B = 0.005394 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.677926 B = 5189.728374 C = 6936.492486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C 0.148 3.852 4 N -0.589 5.589 5 C 0.226 3.774 6 C -0.544 4.544 7 H 0.068 0.932 8 C 0.078 3.922 9 N -0.871 5.871 10 Si 0.890 3.110 11 H -0.276 1.276 12 H -0.280 1.280 13 H -0.269 1.269 14 C 0.594 3.406 15 O -0.560 6.560 16 C -0.321 4.321 17 C 0.091 3.909 18 N -0.470 5.470 19 C -0.082 4.082 20 C 0.342 3.658 21 C -0.156 4.156 22 O -0.361 6.361 23 C 0.014 3.986 24 C 0.017 3.983 25 O -0.359 6.359 26 S 0.417 5.583 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.042 0.958 34 H 0.271 0.729 35 H 0.174 0.826 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.886 -1.409 4.586 6.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.176 4.176 3 C 0.025 3.975 4 N -0.318 5.318 5 C 0.104 3.896 6 C -0.586 4.586 7 H 0.086 0.914 8 C -0.129 4.129 9 N -0.507 5.507 10 Si 0.716 3.284 11 H -0.202 1.202 12 H -0.206 1.206 13 H -0.194 1.194 14 C 0.382 3.618 15 O -0.442 6.442 16 C -0.446 4.446 17 C -0.072 4.072 18 N -0.187 5.187 19 C -0.352 4.352 20 C 0.262 3.738 21 C -0.214 4.214 22 O -0.281 6.281 23 C -0.062 4.062 24 C -0.059 4.059 25 O -0.279 6.279 26 S 0.682 5.318 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.191 0.809 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.749 -1.146 4.789 6.841 hybrid contribution 0.474 0.468 -0.415 0.785 sum 5.223 -0.677 4.374 6.846 Atomic orbital electron populations 1.23780 0.95712 1.01628 1.01726 1.23391 0.96096 0.99346 0.98807 1.20441 0.91980 0.94984 0.90086 1.48043 1.12065 1.56778 1.14951 1.19765 0.97563 0.93325 0.78905 1.21502 1.41193 0.93282 1.02605 0.91384 1.24902 0.94109 0.98909 0.94998 1.69903 1.38942 1.36642 1.05175 0.86589 0.79399 0.84533 0.77855 1.20157 1.20568 1.19356 1.16829 0.81072 0.77880 0.86050 1.90719 1.76669 1.49234 1.27536 1.26176 1.05406 1.09177 1.03878 1.21818 0.90971 0.99739 0.94634 1.66012 1.31815 1.18056 1.02829 1.28075 1.04631 1.01795 1.00674 1.21081 0.76911 0.89084 0.86747 1.22245 1.03776 0.96604 0.98814 1.89014 1.28127 1.28721 1.82240 1.24265 0.99808 0.85436 0.96723 1.24463 0.88147 0.97251 0.96069 1.89371 1.29827 1.41411 1.67320 1.86768 1.12328 1.28737 1.03929 0.88814 0.88389 0.87661 0.89415 0.89876 0.93144 0.94158 0.91945 0.80860 0.91511 0.90423 0.89805 0.88072 0.90442 0.90309 0.86910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.66 14.32 29.01 0.42 -2.25 16 2 C -0.16 -2.55 9.83 -36.02 -0.35 -2.91 16 3 C 0.15 2.69 5.83 -5.20 -0.03 2.66 16 4 N -0.59 -12.47 2.45 -177.98 -0.44 -12.90 16 5 C 0.23 5.15 4.68 -5.19 -0.02 5.12 16 6 C -0.54 -13.09 7.36 -34.44 -0.25 -13.35 16 7 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 8 C 0.08 1.87 5.30 -17.82 -0.09 1.77 16 9 N -0.87 -21.66 13.29 55.43 0.74 -20.93 16 10 Si 0.89 19.10 29.54 -169.99 -5.02 14.07 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 13 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 14 C 0.59 13.17 7.60 -12.85 -0.10 13.07 16 15 O -0.56 -13.07 16.55 5.20 0.09 -12.98 16 16 C -0.32 -6.86 6.08 -37.10 -0.23 -7.09 16 17 C 0.09 1.82 11.15 -18.85 -0.21 1.61 16 18 N -0.47 -9.47 10.50 -11.50 -0.12 -9.59 16 19 C -0.08 -1.61 6.25 -13.29 -0.08 -1.70 16 20 C 0.34 5.80 1.43 -27.88 -0.04 5.76 16 21 C -0.16 -2.23 9.17 37.16 0.34 -1.89 16 22 O -0.36 -5.89 10.85 -59.04 -0.64 -6.53 16 23 C 0.01 0.17 8.07 38.17 0.31 0.48 16 24 C 0.02 0.20 7.94 38.17 0.30 0.50 16 25 O -0.36 -5.99 10.33 -59.04 -0.61 -6.60 16 26 S 0.42 8.85 16.18 -107.50 -1.74 7.11 16 27 H 0.09 1.14 8.06 -52.49 -0.42 0.71 16 28 H 0.10 1.30 7.84 -52.48 -0.41 0.89 16 29 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.09 1.52 7.70 -51.93 -0.40 1.12 16 31 H 0.08 1.51 7.49 -51.93 -0.39 1.12 16 32 H 0.05 1.19 8.07 -51.93 -0.42 0.77 16 33 H 0.04 0.97 4.40 -24.16 -0.11 0.86 16 34 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 35 H 0.17 3.15 8.06 -52.49 -0.42 2.73 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -28.94 368.77 -7.73 -36.67 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.50 Total: 4.31 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -0.05 Total: 1.80 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.18 Total: -43.42 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -1.16 Total: -26.11 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.07 kcal Atomic # 16 Polarization: 8.85 SS G_CDS: -1.74 Total: 7.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.94 -7.73 -36.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861803092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.935 kcal (2) G-P(sol) polarization free energy of solvation -28.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds