Wall clock time and date at job start Tue Mar 31 2020 20:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 119.99765 * 2 1 4 4 N 1.46493 * 109.46816 * 125.00415 * 3 2 1 5 5 C 1.46501 * 119.99926 * 266.72312 * 4 3 2 6 6 C 1.50698 * 109.47337 * 270.00286 * 5 4 3 7 7 H 1.07998 * 120.00194 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00155 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99770 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00110 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46879 * 89.99837 * 10 8 6 12 12 H 1.48503 * 109.46767 * 209.99693 * 10 8 6 13 13 H 1.48494 * 109.46776 * 329.99811 * 10 8 6 14 14 C 1.34778 * 120.00647 * 86.72880 * 4 3 2 15 15 O 1.21689 * 119.99641 * 1.99356 * 14 4 3 16 16 C 1.46673 * 120.00334 * 182.00304 * 14 4 3 17 17 C 1.35665 * 126.13300 * 160.55264 * 16 14 4 18 18 N 1.30945 * 114.19390 * 179.97438 * 17 16 14 19 19 C 1.29427 * 117.36498 * 0.02562 * 18 17 16 20 20 C 1.50699 * 124.80710 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.50173 * 300.40164 * 20 19 18 22 22 O 1.43361 * 109.63504 * 60.71596 * 20 19 18 23 23 C 1.44197 * 107.28796 * 120.55121 * 22 20 19 24 24 C 1.54920 * 103.22942 * 21.35007 * 23 22 20 25 25 O 1.43755 * 109.63217 * 180.08833 * 20 19 18 26 26 S 1.70961 * 110.38941 * 0.25723 * 19 18 17 27 27 H 1.08001 * 119.99964 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.99931 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.99788 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47431 * 5.00135 * 3 2 1 31 31 H 1.09005 * 109.46996 * 244.99748 * 3 2 1 32 32 H 1.09006 * 109.47167 * 30.00114 * 5 4 3 33 33 H 1.09003 * 109.47466 * 149.99688 * 5 4 3 34 34 H 0.97001 * 119.99911 * 180.02562 * 9 8 6 35 35 H 1.07997 * 122.90249 * 0.03563 * 17 16 14 36 36 H 1.08999 * 109.47223 * 179.62102 * 21 20 19 37 37 H 1.09003 * 109.47348 * 299.61867 * 21 20 19 38 38 H 1.09001 * 109.47587 * 59.61737 * 21 20 19 39 39 H 1.08994 * 110.69815 * 139.83246 * 23 22 20 40 40 H 1.08998 * 110.69698 * 262.87078 * 23 22 20 41 41 H 1.09004 * 110.97136 * 82.63682 * 24 23 22 42 42 H 1.08998 * 110.97882 * 206.41744 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3319 1.1313 5 6 2.5825 1.9301 2.4038 6 6 2.9328 3.3958 2.4064 7 1 3.4141 3.8375 1.5463 8 6 2.6389 4.1730 3.5067 9 7 2.0524 3.6353 4.5538 10 14 3.0725 5.9900 3.5095 11 1 1.9338 6.7714 2.9635 12 1 3.3532 6.4297 4.8999 13 1 4.2751 6.2132 2.6674 14 6 4.2280 0.8062 1.0016 15 8 4.5825 0.3421 -0.0659 16 6 5.1438 0.7934 2.1472 17 6 6.2347 -0.0003 2.2905 18 7 6.8888 0.1834 3.4099 19 6 6.4303 1.0762 4.2272 20 6 7.0487 1.4237 5.5568 21 6 7.0798 0.1792 6.4464 22 8 8.3838 1.9056 5.3559 23 6 8.4411 3.2439 5.8898 24 6 7.2490 3.2826 6.8784 25 8 6.2753 2.4540 6.1946 26 16 5.0202 1.8010 3.5876 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 1.5059 1.8137 2.5290 33 1 3.0996 1.4315 3.2237 34 1 1.8453 4.1821 5.3278 35 1 6.5381 -0.7206 1.5452 36 1 7.5333 0.4295 7.4055 37 1 6.0626 -0.1778 6.6076 38 1 7.6657 -0.6007 5.9599 39 1 9.3821 3.4094 6.4145 40 1 8.3086 3.9807 5.0976 41 1 7.5244 2.8470 7.8389 42 1 6.8796 4.3003 7.0047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861803092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:37 Heat of formation + Delta-G solvation = -59.434164 kcal Electronic energy + Delta-G solvation = -27960.787315 eV Core-core repulsion = 24033.645958 eV Total energy + Delta-G solvation = -3927.141357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.74487 -41.08746 -39.98301 -37.20480 -36.16236 -35.30525 -34.05045 -33.52873 -30.92919 -29.55786 -29.46790 -27.78678 -26.41978 -25.03716 -24.29804 -23.46792 -22.17370 -20.81109 -20.05394 -19.27578 -18.64733 -18.27114 -17.87232 -17.61914 -17.00140 -16.57673 -16.32387 -16.24500 -16.07215 -15.64303 -15.33819 -15.02919 -14.77774 -14.50685 -14.34569 -14.17389 -14.07021 -13.91490 -13.66368 -13.31071 -13.15383 -13.05225 -12.83346 -12.69343 -12.42191 -12.29948 -12.19140 -12.09041 -11.75077 -11.38114 -11.22655 -11.06974 -10.72473 -10.37064 -10.25903 -10.21945 -9.83938 -9.51875 -8.23234 -6.35490 -0.69567 0.41850 0.92108 1.25629 1.40646 1.43157 1.45984 1.52738 2.15249 2.23115 2.28445 2.43070 2.65708 3.08587 3.35239 3.61107 3.65594 3.86869 3.94801 4.04914 4.08583 4.17350 4.18651 4.36230 4.46741 4.52355 4.65715 4.66624 4.69790 4.72821 4.77380 4.89422 5.00716 5.04769 5.06384 5.13881 5.50805 5.66473 5.68463 5.85360 5.90757 5.95407 6.35070 6.66471 6.70893 7.08283 7.31936 8.81277 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.010941 B = 0.005394 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.677926 B = 5189.728374 C = 6936.492486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.185 4.185 3 C 0.145 3.855 4 N -0.589 5.589 5 C 0.237 3.763 6 C -0.551 4.551 7 H 0.054 0.946 8 C 0.050 3.950 9 N -0.891 5.891 10 Si 0.934 3.066 11 H -0.273 1.273 12 H -0.271 1.271 13 H -0.273 1.273 14 C 0.590 3.410 15 O -0.579 6.579 16 C -0.340 4.340 17 C 0.097 3.903 18 N -0.477 5.477 19 C -0.067 4.067 20 C 0.337 3.663 21 C -0.150 4.150 22 O -0.379 6.379 23 C 0.008 3.992 24 C 0.012 3.988 25 O -0.387 6.387 26 S 0.381 5.619 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.273 0.727 35 H 0.191 0.809 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.140 0.860 40 H 0.069 0.931 41 H 0.109 0.891 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.320 -0.999 5.888 7.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.204 4.204 3 C 0.023 3.977 4 N -0.318 5.318 5 C 0.115 3.885 6 C -0.592 4.592 7 H 0.072 0.928 8 C -0.155 4.155 9 N -0.528 5.528 10 Si 0.759 3.241 11 H -0.198 1.198 12 H -0.196 1.196 13 H -0.198 1.198 14 C 0.378 3.622 15 O -0.463 6.463 16 C -0.465 4.465 17 C -0.065 4.065 18 N -0.194 5.194 19 C -0.338 4.338 20 C 0.257 3.743 21 C -0.209 4.209 22 O -0.300 6.300 23 C -0.068 4.068 24 C -0.063 4.063 25 O -0.307 6.307 26 S 0.646 5.354 27 H 0.136 0.864 28 H 0.126 0.874 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.208 0.792 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.158 0.842 40 H 0.088 0.912 41 H 0.127 0.873 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.156 -0.720 6.078 8.003 hybrid contribution 0.384 0.343 -0.783 0.937 sum 5.540 -0.377 5.296 7.674 Atomic orbital electron populations 1.24048 0.94797 1.03259 0.97711 1.23170 0.96854 0.97877 1.02474 1.20582 0.91714 0.96541 0.88814 1.48107 1.12308 1.56132 1.15206 1.19530 0.96556 0.92888 0.79531 1.21466 1.41465 0.93925 1.02311 0.92819 1.25367 0.93892 1.01626 0.94610 1.69961 1.39590 1.37687 1.05540 0.85904 0.78966 0.81119 0.78101 1.19805 1.19612 1.19813 1.16966 0.81391 0.77783 0.86061 1.90690 1.77067 1.50321 1.28181 1.26161 1.06144 1.10236 1.03952 1.22144 0.90226 0.99287 0.94816 1.66107 1.31807 1.18491 1.02990 1.28691 1.03225 1.00308 1.01565 1.21269 0.77129 0.90421 0.85496 1.22223 1.03831 0.95202 0.99655 1.88988 1.27335 1.30744 1.82913 1.24567 1.01945 0.83390 0.96904 1.24827 0.86987 0.97776 0.96726 1.89349 1.31479 1.42037 1.67855 1.86759 1.14096 1.29976 1.04616 0.86351 0.87416 0.88466 0.88893 0.90443 0.94321 0.94745 0.91733 0.79240 0.88493 0.90757 0.90270 0.84217 0.91234 0.87319 0.85316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 14.32 67.78 0.97 -3.22 16 2 C -0.18 -5.96 9.83 25.65 0.25 -5.71 16 3 C 0.15 5.37 5.83 85.64 0.50 5.87 16 4 N -0.59 -25.56 2.45 -835.23 -2.04 -27.60 16 5 C 0.24 11.04 4.68 85.63 0.40 11.44 16 6 C -0.55 -26.94 7.36 25.60 0.19 -26.75 16 7 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 8 C 0.05 2.41 5.30 84.65 0.45 2.86 16 9 N -0.89 -44.38 13.29 21.45 0.28 -44.09 16 10 Si 0.93 38.74 29.54 68.60 2.03 40.77 16 11 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 12 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 13 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 14 C 0.59 26.82 7.60 86.45 0.66 27.47 16 15 O -0.58 -27.63 16.55 -4.31 -0.07 -27.70 16 16 C -0.34 -14.83 6.08 23.88 0.15 -14.68 16 17 C 0.10 3.92 11.15 84.23 0.94 4.86 16 18 N -0.48 -19.09 10.50 -190.30 -2.00 -21.09 16 19 C -0.07 -2.63 6.25 88.46 0.55 -2.08 16 20 C 0.34 11.01 1.43 29.85 0.04 11.05 16 21 C -0.15 -4.04 9.17 71.98 0.66 -3.38 16 22 O -0.38 -11.69 10.85 -126.22 -1.37 -13.06 16 23 C 0.01 0.17 8.07 72.64 0.59 0.75 16 24 C 0.01 0.25 7.94 72.64 0.58 0.82 16 25 O -0.39 -12.35 10.33 -126.22 -1.30 -13.65 16 26 S 0.38 16.42 16.18 -56.49 -0.91 15.51 16 27 H 0.12 2.53 8.06 -2.91 -0.02 2.51 16 28 H 0.11 2.62 7.84 -2.91 -0.02 2.60 16 29 H 0.10 3.28 8.06 -2.91 -0.02 3.26 16 30 H 0.09 3.26 7.70 -2.39 -0.02 3.24 16 31 H 0.08 2.90 7.49 -2.38 -0.02 2.88 16 32 H 0.04 1.87 8.07 -2.38 -0.02 1.85 16 33 H 0.04 1.71 4.40 -20.04 -0.09 1.62 16 34 H 0.27 12.92 8.31 -92.71 -0.77 12.14 16 35 H 0.19 6.86 8.06 -2.91 -0.02 6.84 16 36 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -62.35 368.77 2.49 -59.86 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.95 Total: 21.74 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 6.92 Total: 9.31 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -3.76 Total: -92.78 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -2.74 Total: -54.42 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Atomic # 16 Polarization: 16.42 SS G_CDS: -0.91 Total: 15.51 kcal Total: -62.35 2.49 -59.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861803092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.430 kcal (2) G-P(sol) polarization free energy of solvation -62.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds