Wall clock time and date at job start Tue Mar 31 2020 21:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47238 * 2 1 4 4 C 1.50705 * 109.46959 * 240.00371 * 2 1 3 5 5 H 1.07998 * 120.00416 * 240.00014 * 4 2 1 6 6 C 1.37878 * 119.99643 * 59.99925 * 4 2 1 7 7 N 1.31513 * 120.00300 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99766 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47316 * 60.00227 * 8 6 4 10 10 H 1.48505 * 109.46819 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47047 * 299.99727 * 8 6 4 12 12 C 1.53003 * 109.47506 * 120.00667 * 2 1 3 13 13 S 1.81396 * 109.46959 * 299.99794 * 12 2 1 14 14 O 1.42100 * 110.54409 * 68.37343 * 13 12 2 15 15 O 1.42103 * 110.54126 * 291.62616 * 13 12 2 16 16 N 1.65598 * 104.44918 * 179.97438 * 13 12 2 17 17 N 1.40095 * 119.99909 * 59.99761 * 16 13 12 18 18 C 1.46738 * 125.62191 * 90.00498 * 17 16 13 19 19 C 1.50826 * 106.25040 * 179.97438 * 18 17 16 20 20 C 1.37578 * 133.23740 * 180.02562 * 19 18 17 21 21 C 1.38476 * 119.95420 * 179.71508 * 20 19 18 22 22 C 1.38380 * 120.19120 * 0.25727 * 21 20 19 23 23 C 1.37948 * 120.31774 * 359.97438 * 22 21 20 24 24 C 1.39619 * 119.82756 * 0.02562 * 23 22 21 25 25 C 1.34423 * 125.62644 * 270.62992 * 17 16 13 26 26 O 1.21554 * 124.85396 * 359.37118 * 25 17 16 27 27 H 1.09002 * 109.46881 * 299.99566 * 1 2 3 28 28 H 1.08997 * 109.47777 * 59.99364 * 1 2 3 29 29 H 1.09001 * 109.47353 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47376 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47458 * 300.00507 * 3 2 1 32 32 H 1.09002 * 109.46831 * 60.00403 * 3 2 1 33 33 H 0.97003 * 120.00335 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.46906 * 179.97438 * 12 2 1 35 35 H 1.08996 * 109.46725 * 59.99689 * 12 2 1 36 36 H 0.96998 * 119.99772 * 240.00147 * 16 13 12 37 37 H 1.09002 * 110.10150 * 60.79793 * 18 17 16 38 38 H 1.09004 * 110.14926 * 299.21901 * 18 17 16 39 39 H 1.08002 * 120.02542 * 359.97438 * 20 19 18 40 40 H 1.08005 * 119.90666 * 180.23264 * 21 20 19 41 41 H 1.08002 * 119.84295 * 179.97438 * 22 21 20 42 42 H 1.08004 * 120.08027 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3211 -1.1201 -4.0081 9 1 1.8255 -2.5199 -4.0080 10 1 1.8256 -0.4201 -5.2205 11 1 3.8061 -1.1206 -4.0084 12 6 2.0401 -0.7214 1.2492 13 16 1.4355 0.1336 2.7303 14 8 0.0281 -0.0186 2.8544 15 8 2.0481 1.4098 2.8544 16 7 2.0532 -0.7412 3.9935 17 7 3.4397 -0.8828 4.1357 18 6 4.3178 0.0184 4.8907 19 6 5.7124 -0.5400 4.7554 20 6 6.9384 -0.1398 5.2346 21 6 8.0711 -0.8798 4.9396 22 6 7.9747 -2.0185 4.1594 23 6 6.7510 -2.4258 3.6699 24 6 5.6044 -1.6850 3.9629 25 6 4.1867 -1.8599 3.5933 26 8 3.7540 -2.7665 2.9089 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 0.7087 1.1617 -3.4843 34 1 3.1301 -0.7217 1.2488 35 1 1.6767 -1.7490 1.2490 36 1 1.4550 -1.1556 4.6348 37 1 4.0224 0.0373 5.9397 38 1 4.2742 1.0236 4.4714 39 1 7.0167 0.7485 5.8439 40 1 9.0326 -0.5670 5.3194 41 1 8.8619 -2.5912 3.9325 42 1 6.6802 -3.3155 3.0616 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867382403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:25 Heat of formation + Delta-G solvation = -26.640116 kcal Electronic energy + Delta-G solvation = -28124.502251 eV Core-core repulsion = 24198.782951 eV Total energy + Delta-G solvation = -3925.719300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.31157 -38.40033 -36.81191 -36.48110 -36.27586 -35.50150 -33.69283 -31.64862 -31.41350 -29.41701 -26.98283 -26.64470 -25.73312 -25.20441 -23.81060 -21.97951 -20.80150 -19.77973 -18.99572 -18.12175 -17.63592 -17.16631 -16.51624 -15.98082 -15.62572 -15.39904 -15.23239 -14.85579 -14.71920 -14.57394 -14.05762 -13.55738 -13.45764 -13.21331 -13.03073 -12.76243 -12.51362 -12.30835 -12.21796 -12.14173 -11.64744 -11.45947 -11.15501 -11.07351 -11.00029 -10.82304 -10.70941 -10.36876 -10.30148 -10.08499 -9.87396 -9.65851 -9.52626 -9.41266 -9.29442 -9.00044 -8.70258 -8.37639 -6.01021 -4.12131 0.44558 0.51452 0.97076 1.77086 2.55398 3.30836 3.35070 3.38262 3.42840 3.51551 3.78853 4.09955 4.14876 4.40279 4.54234 4.66178 4.70368 4.94821 5.02176 5.13078 5.19542 5.24398 5.40217 5.60768 5.63761 5.73749 5.81686 5.95421 6.04206 6.06286 6.40624 6.45545 6.55324 6.71979 6.77900 6.87083 6.94052 7.02171 7.30915 7.49623 7.70657 7.97474 8.01954 8.10768 8.34558 8.86552 9.52917 11.00558 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.004208 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.142389 B = 6652.458817 C = 7969.173355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.163 4.163 4 C -0.499 4.499 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.561 4.561 13 S 2.581 3.419 14 O -0.946 6.946 15 O -0.952 6.952 16 N -0.888 5.888 17 N -0.405 5.405 18 C 0.137 3.863 19 C -0.073 4.073 20 C -0.101 4.101 21 C -0.085 4.085 22 C -0.127 4.127 23 C -0.039 4.039 24 C -0.148 4.148 25 C 0.554 3.446 26 O -0.497 6.497 27 H 0.025 0.975 28 H 0.097 0.903 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.097 0.903 32 H 0.026 0.974 33 H 0.263 0.737 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.417 0.583 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.700 -2.171 17.823 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 C -0.220 4.220 4 C -0.538 4.538 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.696 4.696 13 S 2.679 3.321 14 O -0.934 6.934 15 O -0.941 6.941 16 N -0.733 5.733 17 N -0.233 5.233 18 C 0.014 3.986 19 C -0.075 4.075 20 C -0.120 4.120 21 C -0.103 4.103 22 C -0.145 4.145 23 C -0.058 4.058 24 C -0.153 4.153 25 C 0.342 3.658 26 O -0.370 6.370 27 H 0.044 0.956 28 H 0.116 0.884 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.115 0.885 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.254 0.746 37 H 0.121 0.879 38 H 0.133 0.867 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 11.748 -1.670 17.322 20.997 hybrid contribution 0.318 -1.195 -0.706 1.424 sum 12.065 -2.865 16.617 20.734 Atomic orbital electron populations 1.22288 0.96841 1.00805 1.02234 1.17980 0.92857 0.92185 0.89003 1.22277 0.99733 0.97745 1.02283 1.20901 1.31663 1.12088 0.89171 0.92200 1.24924 0.94884 0.94986 0.98883 1.69786 1.36407 1.22619 1.23574 0.86572 0.79170 0.79773 0.81986 1.20209 1.21187 1.20263 1.30388 1.11217 1.12974 1.15005 1.06578 0.74452 0.75270 0.75789 1.93607 1.28106 1.86453 1.85263 1.93537 1.77841 1.37815 1.84941 1.56019 0.97403 1.73462 1.46432 1.46197 0.95214 1.28377 1.53540 1.20810 0.84848 0.94848 0.98064 1.20379 0.94525 0.95451 0.97175 1.20310 0.90115 1.00650 1.00897 1.21350 0.98361 0.94241 0.96389 1.21155 0.97340 0.97505 0.98542 1.20895 0.90162 0.98418 0.96340 1.20032 0.93367 0.98845 1.03053 1.18668 0.85960 0.81271 0.79889 1.90858 1.76978 1.32247 1.36878 0.95642 0.88432 0.94255 0.94485 0.88472 0.95540 0.92708 0.86591 0.85519 0.74597 0.87929 0.86710 0.84749 0.84801 0.84774 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 7.77 37.16 0.29 -3.85 16 2 C 0.08 2.08 0.52 -155.66 -0.08 1.99 16 3 C -0.16 -4.07 7.77 37.16 0.29 -3.78 16 4 C -0.50 -13.63 8.01 -34.44 -0.28 -13.91 16 5 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 6 C 0.06 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.89 -24.50 9.35 55.43 0.52 -23.98 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C -0.56 -12.14 4.59 37.16 0.17 -11.97 16 13 S 2.58 49.86 4.66 -107.50 -0.50 49.35 16 14 O -0.95 -19.92 15.70 -57.54 -0.90 -20.83 16 15 O -0.95 -19.64 15.71 -57.54 -0.90 -20.55 16 16 N -0.89 -13.46 6.64 60.35 0.40 -13.06 16 17 N -0.41 -5.81 3.71 -62.39 -0.23 -6.04 16 18 C 0.14 1.46 7.62 -5.00 -0.04 1.42 16 19 C -0.07 -0.74 6.38 -104.27 -0.66 -1.40 16 20 C -0.10 -0.74 10.03 -39.73 -0.40 -1.14 16 21 C -0.09 -0.55 10.05 -39.44 -0.40 -0.95 16 22 C -0.13 -0.95 10.02 -39.64 -0.40 -1.35 16 23 C -0.04 -0.40 10.10 -39.17 -0.40 -0.80 16 24 C -0.15 -1.84 6.26 -105.05 -0.66 -2.50 16 25 C 0.55 8.70 7.62 -12.62 -0.10 8.60 16 26 O -0.50 -9.39 17.55 5.32 0.09 -9.30 16 27 H 0.02 0.60 5.46 -51.93 -0.28 0.32 16 28 H 0.10 2.62 6.07 -51.93 -0.32 2.30 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.10 2.60 6.07 -51.93 -0.32 2.28 16 32 H 0.03 0.62 5.46 -51.93 -0.28 0.33 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.12 2.46 7.70 -51.92 -0.40 2.06 16 35 H 0.13 2.68 8.14 -51.93 -0.42 2.26 16 36 H 0.42 5.15 8.92 -176.25 -1.57 3.57 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 41 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -34.33 354.76 -10.46 -44.80 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.52 Total: 5.99 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -2.74 Total: -27.96 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.69 Total: -43.08 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -1.71 Total: -50.67 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 49.86 SS G_CDS: -0.50 Total: 49.35 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.33 -10.46 -44.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867382403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.155 kcal (2) G-P(sol) polarization free energy of solvation -34.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds