Wall clock time and date at job start Tue Mar 31 2020 21:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47238 * 2 1 4 4 C 1.50705 * 109.46959 * 240.00371 * 2 1 3 5 5 H 1.07998 * 120.00416 * 240.00014 * 4 2 1 6 6 C 1.37878 * 119.99643 * 59.99925 * 4 2 1 7 7 N 1.31513 * 120.00300 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99766 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47316 * 60.00227 * 8 6 4 10 10 H 1.48505 * 109.46819 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47047 * 299.99727 * 8 6 4 12 12 C 1.53003 * 109.47506 * 120.00667 * 2 1 3 13 13 S 1.81396 * 109.46959 * 299.99794 * 12 2 1 14 14 O 1.42100 * 110.54409 * 68.37343 * 13 12 2 15 15 O 1.42103 * 110.54126 * 291.62616 * 13 12 2 16 16 N 1.65598 * 104.44918 * 179.97438 * 13 12 2 17 17 N 1.40095 * 119.99909 * 59.99761 * 16 13 12 18 18 C 1.46738 * 125.62191 * 90.00498 * 17 16 13 19 19 C 1.50826 * 106.25040 * 179.97438 * 18 17 16 20 20 C 1.37578 * 133.23740 * 180.02562 * 19 18 17 21 21 C 1.38476 * 119.95420 * 179.71508 * 20 19 18 22 22 C 1.38380 * 120.19120 * 0.25727 * 21 20 19 23 23 C 1.37948 * 120.31774 * 359.97438 * 22 21 20 24 24 C 1.39619 * 119.82756 * 0.02562 * 23 22 21 25 25 C 1.34423 * 125.62644 * 270.62992 * 17 16 13 26 26 O 1.21554 * 124.85396 * 359.37118 * 25 17 16 27 27 H 1.09002 * 109.46881 * 299.99566 * 1 2 3 28 28 H 1.08997 * 109.47777 * 59.99364 * 1 2 3 29 29 H 1.09001 * 109.47353 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47376 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47458 * 300.00507 * 3 2 1 32 32 H 1.09002 * 109.46831 * 60.00403 * 3 2 1 33 33 H 0.97003 * 120.00335 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.46906 * 179.97438 * 12 2 1 35 35 H 1.08996 * 109.46725 * 59.99689 * 12 2 1 36 36 H 0.96998 * 119.99772 * 240.00147 * 16 13 12 37 37 H 1.09002 * 110.10150 * 60.79793 * 18 17 16 38 38 H 1.09004 * 110.14926 * 299.21901 * 18 17 16 39 39 H 1.08002 * 120.02542 * 359.97438 * 20 19 18 40 40 H 1.08005 * 119.90666 * 180.23264 * 21 20 19 41 41 H 1.08002 * 119.84295 * 179.97438 * 22 21 20 42 42 H 1.08004 * 120.08027 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3211 -1.1201 -4.0081 9 1 1.8255 -2.5199 -4.0080 10 1 1.8256 -0.4201 -5.2205 11 1 3.8061 -1.1206 -4.0084 12 6 2.0401 -0.7214 1.2492 13 16 1.4355 0.1336 2.7303 14 8 0.0281 -0.0186 2.8544 15 8 2.0481 1.4098 2.8544 16 7 2.0532 -0.7412 3.9935 17 7 3.4397 -0.8828 4.1357 18 6 4.3178 0.0184 4.8907 19 6 5.7124 -0.5400 4.7554 20 6 6.9384 -0.1398 5.2346 21 6 8.0711 -0.8798 4.9396 22 6 7.9747 -2.0185 4.1594 23 6 6.7510 -2.4258 3.6699 24 6 5.6044 -1.6850 3.9629 25 6 4.1867 -1.8599 3.5933 26 8 3.7540 -2.7665 2.9089 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 0.7087 1.1617 -3.4843 34 1 3.1301 -0.7217 1.2488 35 1 1.6767 -1.7490 1.2490 36 1 1.4550 -1.1556 4.6348 37 1 4.0224 0.0373 5.9397 38 1 4.2742 1.0236 4.4714 39 1 7.0167 0.7485 5.8439 40 1 9.0326 -0.5670 5.3194 41 1 8.8619 -2.5912 3.9325 42 1 6.6802 -3.3155 3.0616 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867382403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:24 Heat of formation + Delta-G solvation = -50.420281 kcal Electronic energy + Delta-G solvation = -28125.533436 eV Core-core repulsion = 24198.782951 eV Total energy + Delta-G solvation = -3926.750486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.24742 -39.28354 -38.42108 -38.25354 -37.65211 -37.18439 -34.71856 -33.70721 -32.09364 -30.35074 -28.49699 -27.83212 -27.77057 -27.30895 -24.66362 -22.70301 -21.82149 -21.47399 -20.61665 -19.40561 -19.08765 -18.07919 -17.98698 -17.31405 -17.03689 -16.81594 -16.69000 -16.61478 -15.68293 -15.44115 -15.10817 -14.90181 -14.87239 -14.58810 -14.48462 -14.13228 -14.05694 -13.94632 -13.36669 -13.30954 -13.11861 -12.96297 -12.89730 -12.79740 -12.65154 -12.42315 -12.26758 -12.20490 -12.07683 -11.85667 -11.66506 -11.44352 -10.95247 -10.71205 -10.52116 -10.46272 -9.98841 -9.74905 -8.08495 -6.26776 -1.06831 -0.29284 0.34340 0.52499 1.40913 1.41698 1.49576 1.57883 2.06536 2.39993 2.51493 2.78510 2.98917 3.11109 3.15505 3.27921 3.86506 3.89646 3.98891 4.20233 4.28882 4.36063 4.43311 4.49404 4.50703 4.70555 4.75405 4.76896 4.80526 4.88095 4.98753 5.03212 5.19055 5.29098 5.38040 5.43847 5.46595 5.55295 5.58604 5.83270 5.90954 5.91236 6.03983 6.28678 6.75128 6.87305 7.40871 8.91530 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.004208 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.142389 B = 6652.458817 C = 7969.173355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.071 3.929 3 C -0.156 4.156 4 C -0.522 4.522 5 H 0.050 0.950 6 C 0.024 3.976 7 N -0.903 5.903 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.279 1.279 11 H -0.273 1.273 12 C -0.571 4.571 13 S 2.616 3.384 14 O -0.962 6.962 15 O -0.962 6.962 16 N -0.880 5.880 17 N -0.409 5.409 18 C 0.129 3.871 19 C -0.073 4.073 20 C -0.097 4.097 21 C -0.070 4.070 22 C -0.125 4.125 23 C -0.056 4.056 24 C -0.186 4.186 25 C 0.541 3.459 26 O -0.547 6.547 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.265 0.735 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.433 0.567 37 H 0.138 0.862 38 H 0.115 0.885 39 H 0.169 0.831 40 H 0.174 0.826 41 H 0.162 0.838 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.205 -1.476 19.843 25.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.068 3.932 3 C -0.214 4.214 4 C -0.561 4.561 5 H 0.068 0.932 6 C -0.176 4.176 7 N -0.541 5.541 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.204 1.204 11 H -0.199 1.199 12 C -0.704 4.704 13 S 2.711 3.289 14 O -0.951 6.951 15 O -0.951 6.951 16 N -0.729 5.729 17 N -0.236 5.236 18 C 0.008 3.992 19 C -0.075 4.075 20 C -0.114 4.114 21 C -0.088 4.088 22 C -0.142 4.142 23 C -0.075 4.075 24 C -0.190 4.190 25 C 0.331 3.669 26 O -0.425 6.425 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.132 0.868 35 H 0.141 0.859 36 H 0.274 0.726 37 H 0.156 0.844 38 H 0.133 0.867 39 H 0.187 0.813 40 H 0.191 0.809 41 H 0.180 0.820 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 14.253 -0.959 19.352 24.053 hybrid contribution -0.340 -1.410 -1.220 1.895 sum 13.912 -2.369 18.132 22.976 Atomic orbital electron populations 1.22210 0.97179 1.00549 1.01775 1.17968 0.92703 0.92379 0.90114 1.22174 0.99637 0.97741 1.01808 1.21148 1.32062 1.12231 0.90683 0.93184 1.25607 0.95019 0.95642 1.01351 1.69895 1.36764 1.23325 1.24161 0.85684 0.78726 0.78707 0.78950 1.20092 1.20373 1.19877 1.30349 1.11126 1.12939 1.16005 1.05327 0.73676 0.74741 0.75138 1.93577 1.29291 1.86738 1.85490 1.93517 1.78060 1.38462 1.85047 1.55332 0.98906 1.73203 1.45466 1.46572 0.94518 1.28897 1.53653 1.21134 0.84763 0.93834 0.99425 1.20486 0.95180 0.94591 0.97224 1.20771 0.88903 1.01527 1.00245 1.21882 0.99745 0.92806 0.94377 1.21518 0.96857 0.98071 0.97774 1.21070 0.90924 0.98464 0.97075 1.19975 0.91888 1.01329 1.05856 1.19429 0.87612 0.80763 0.79080 1.90810 1.78073 1.34326 1.39246 0.94592 0.90284 0.94372 0.94463 0.90394 0.94438 0.92585 0.86837 0.85851 0.72631 0.84412 0.86672 0.81321 0.80855 0.82042 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.23 7.77 71.98 0.56 -7.67 16 2 C 0.07 3.65 0.52 -52.93 -0.03 3.62 16 3 C -0.16 -7.94 7.77 71.98 0.56 -7.38 16 4 C -0.52 -29.31 8.01 25.60 0.21 -29.11 16 5 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 6 C 0.02 1.31 5.15 84.66 0.44 1.75 16 7 N -0.90 -50.80 9.35 21.45 0.20 -50.60 16 8 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 12 C -0.57 -25.50 4.59 71.98 0.33 -25.17 16 13 S 2.62 100.87 4.66 -56.49 -0.26 100.60 16 14 O -0.96 -40.29 15.70 -127.65 -2.00 -42.29 16 15 O -0.96 -38.98 15.71 -127.65 -2.01 -40.98 16 16 N -0.88 -26.33 6.64 37.02 0.25 -26.08 16 17 N -0.41 -11.56 3.71 -469.78 -1.74 -13.31 16 18 C 0.13 2.51 7.62 85.63 0.65 3.16 16 19 C -0.07 -1.31 6.38 -19.63 -0.13 -1.43 16 20 C -0.10 -1.01 10.03 22.17 0.22 -0.79 16 21 C -0.07 -0.59 10.05 22.36 0.22 -0.36 16 22 C -0.12 -1.49 10.02 22.23 0.22 -1.27 16 23 C -0.06 -1.13 10.10 22.53 0.23 -0.90 16 24 C -0.19 -4.58 6.26 -20.14 -0.13 -4.70 16 25 C 0.54 17.49 7.62 86.75 0.66 18.15 16 26 O -0.55 -21.96 17.55 -3.88 -0.07 -22.03 16 27 H 0.04 1.73 5.46 -2.39 -0.01 1.71 16 28 H 0.08 4.36 6.07 -2.39 -0.01 4.34 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.08 4.26 6.07 -2.39 -0.01 4.25 16 32 H 0.04 1.77 5.46 -2.39 -0.01 1.76 16 33 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.11 5.03 7.70 -2.39 -0.02 5.01 16 35 H 0.12 5.48 8.14 -2.39 -0.02 5.46 16 36 H 0.43 10.38 8.92 -217.37 -1.94 8.44 16 37 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.12 2.25 8.14 -2.38 -0.02 2.23 16 39 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 40 H 0.17 0.15 8.06 -2.91 -0.02 0.13 16 41 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 42 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -76.58 354.76 -0.46 -77.04 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: -0.88 Total: 23.69 kcal Atomic # 6 Polarization: -56.13 SS G_CDS: 4.02 Total: -52.11 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -1.30 Total: -89.99 kcal Atomic # 8 Polarization: -101.23 SS G_CDS: -4.08 Total: -105.31 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 100.87 SS G_CDS: -0.26 Total: 100.60 kcal Total: -76.58 -0.46 -77.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867382403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.620 kcal (2) G-P(sol) polarization free energy of solvation -76.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds