Wall clock time and date at job start Tue Mar 31 2020 21:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47415 * 2 1 4 4 N 1.46494 * 109.47662 * 120.00312 * 2 1 3 5 5 C 1.34780 * 120.00548 * 154.99488 * 4 2 1 6 6 O 1.21512 * 119.99489 * 0.02562 * 5 4 2 7 7 O 1.34638 * 119.99920 * 179.97438 * 5 4 2 8 8 C 1.45200 * 116.99658 * 179.97438 * 7 5 4 9 9 C 1.53496 * 114.21073 * 210.00286 * 8 7 5 10 10 N 1.47060 * 87.98740 * 220.35176 * 9 8 7 11 11 C 1.34776 * 136.05355 * 207.08799 * 10 9 8 12 12 O 1.21762 * 120.00131 * 359.71781 * 11 10 9 13 13 C 1.46238 * 120.00089 * 179.97438 * 11 10 9 14 14 S 1.75669 * 125.22310 * 359.41531 * 13 11 10 15 15 C 1.75479 * 92.08910 * 179.97438 * 14 13 11 16 16 C 1.32765 * 111.36262 * 0.30855 * 15 14 13 17 17 C 1.39544 * 125.23296 * 179.72395 * 13 11 10 18 18 C 1.40537 * 123.71333 * 359.92751 * 17 13 11 19 19 H 1.08007 * 119.99688 * 336.49963 * 18 17 13 20 20 C 1.40300 * 120.00390 * 156.50449 * 18 17 13 21 21 N 1.30645 * 120.00114 * 350.14839 * 20 18 17 22 22 Si 1.86805 * 120.00512 * 170.14663 * 20 18 17 23 23 H 1.48507 * 109.46908 * 89.99836 * 22 20 18 24 24 H 1.48493 * 109.47306 * 210.00071 * 22 20 18 25 25 H 1.48498 * 109.46764 * 330.00265 * 22 20 18 26 26 C 1.47057 * 87.88673 * 27.34191 * 10 9 8 27 27 H 1.09001 * 109.46976 * 299.99783 * 1 2 3 28 28 H 1.09000 * 109.47561 * 59.99712 * 1 2 3 29 29 H 1.08998 * 109.46891 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46976 * 240.00217 * 2 1 3 31 31 H 1.09001 * 109.47341 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47487 * 300.00453 * 3 2 1 33 33 H 1.09003 * 109.47328 * 60.00408 * 3 2 1 34 34 H 0.97002 * 119.99976 * 335.00125 * 4 2 1 35 35 H 1.09003 * 113.41388 * 343.20829 * 8 7 5 36 36 H 1.08997 * 113.46752 * 105.56497 * 9 8 7 37 37 H 1.09008 * 113.46455 * 335.13270 * 9 8 7 38 38 H 1.08001 * 124.31624 * 180.02562 * 15 14 13 39 39 H 1.07998 * 122.78012 * 179.78716 * 16 15 14 40 40 H 0.96992 * 120.00396 * 179.97438 * 21 20 18 41 41 H 1.09002 * 113.47103 * 87.44208 * 26 10 9 42 42 H 1.09005 * 113.46696 * 217.87887 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 3.2404 -1.2593 1.1942 6 8 3.9371 -1.1986 0.2005 7 8 3.6894 -1.8935 2.2937 8 6 5.0143 -2.4829 2.2197 9 6 5.1996 -3.7275 3.0989 10 7 6.5388 -3.2241 3.4391 11 6 7.7132 -3.7678 3.8154 12 8 7.8119 -4.9746 3.9442 13 6 8.8675 -2.9081 4.0744 14 16 8.8813 -1.1579 3.9239 15 6 10.5662 -1.0656 4.4054 16 6 11.0660 -2.2710 4.6501 17 6 10.1288 -3.3523 4.4731 18 6 10.4501 -4.7048 4.6798 19 1 9.6700 -5.4166 4.9062 20 6 11.7842 -5.1302 4.5922 21 7 12.6997 -4.3193 4.1329 22 14 12.2516 -6.8563 5.1325 23 1 12.1403 -7.7835 3.9777 24 1 13.6490 -6.8564 5.6346 25 1 11.3367 -7.3010 6.2143 26 6 6.0309 -1.8659 3.1944 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.4623 -0.7388 1.9894 35 1 5.3810 -2.5977 1.1997 36 1 5.2167 -4.6594 2.5339 37 1 4.5198 -3.7626 3.9503 38 1 11.1265 -0.1460 4.4875 39 1 12.0895 -2.4284 4.9567 40 1 13.6220 -4.6132 4.0727 41 1 5.5703 -1.4101 4.0710 42 1 6.7564 -1.2117 2.7107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868353262.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:06 Heat of formation + Delta-G solvation = -54.545473 kcal Electronic energy + Delta-G solvation = -26222.506008 eV Core-core repulsion = 22295.576640 eV Total energy + Delta-G solvation = -3926.929367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.75681 -39.42472 -37.51344 -36.64470 -35.75181 -35.34999 -33.08323 -31.75701 -29.44820 -28.54225 -27.60145 -26.19771 -25.49785 -23.44610 -22.14925 -21.20572 -20.84824 -19.38819 -19.01593 -18.61936 -17.30485 -16.85430 -16.40397 -15.98881 -15.79065 -15.39403 -14.83468 -14.74326 -14.42452 -14.01709 -13.61982 -13.55902 -13.11378 -13.02842 -12.70078 -12.68748 -12.47419 -12.46644 -12.26440 -11.88147 -11.78782 -11.65829 -11.43280 -11.37626 -11.28658 -11.15100 -10.97752 -10.69734 -10.48470 -10.20859 -10.06547 -9.61259 -9.48344 -9.18536 -8.57808 -8.11231 -7.51649 -7.15383 -7.07449 -4.55848 1.96928 2.13841 2.71921 2.95214 2.98288 3.06113 3.13740 3.49169 3.63112 3.76795 3.83623 4.03297 4.36478 4.39912 4.47132 4.66126 4.85605 4.99149 5.18697 5.19329 5.26053 5.30290 5.40498 5.53030 5.58928 5.65251 5.69727 5.82389 5.88840 5.93393 5.96727 6.06906 6.15926 6.54972 6.76696 6.87592 7.14807 7.20814 7.21917 7.46166 7.69945 8.22283 8.29779 8.44052 8.58082 8.73505 9.44820 9.83312 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.023235 B = 0.002434 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.814250 B =11501.901891 C =12333.120925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.153 3.847 3 C -0.168 4.168 4 N -0.708 5.708 5 C 0.647 3.353 6 O -0.568 6.568 7 O -0.354 6.354 8 C 0.065 3.935 9 C 0.113 3.887 10 N -0.652 5.652 11 C 0.635 3.365 12 O -0.555 6.555 13 C -0.426 4.426 14 S -0.041 6.041 15 C -0.211 4.211 16 C -0.100 4.100 17 C 0.142 3.858 18 C -0.375 4.375 19 H 0.111 0.889 20 C 0.067 3.933 21 N -0.775 5.775 22 Si 0.926 3.074 23 H -0.264 1.264 24 H -0.274 1.274 25 H -0.255 1.255 26 C 0.096 3.904 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.405 0.595 35 H 0.129 0.871 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.137 0.863 39 H 0.145 0.855 40 H 0.289 0.711 41 H 0.085 0.915 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.095 8.399 -4.033 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 C -0.226 4.226 4 N -0.368 5.368 5 C 0.400 3.600 6 O -0.456 6.456 7 O -0.267 6.267 8 C 0.009 3.991 9 C -0.011 4.011 10 N -0.392 5.392 11 C 0.437 3.563 12 O -0.437 6.437 13 C -0.545 4.545 14 S 0.215 5.785 15 C -0.345 4.345 16 C -0.132 4.132 17 C 0.131 3.869 18 C -0.406 4.406 19 H 0.129 0.871 20 C -0.155 4.155 21 N -0.399 5.399 22 Si 0.750 3.250 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.178 1.178 26 C -0.029 4.029 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.240 0.760 35 H 0.146 0.854 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.154 0.846 39 H 0.162 0.838 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.183 8.721 -4.817 19.862 hybrid contribution 1.204 -1.393 0.865 2.034 sum -15.979 7.328 -3.953 18.018 Atomic orbital electron populations 1.22092 0.93630 1.02927 1.03203 1.20956 0.93903 0.92843 0.87321 1.22244 1.02611 0.95505 1.02258 1.44811 1.15582 1.58391 1.18059 1.18196 0.82487 0.77381 0.81949 1.91004 1.56940 1.63712 1.33965 1.86286 1.35765 1.66686 1.37958 1.24970 0.78051 0.94642 1.01486 1.22895 0.84841 0.96289 0.97038 1.49015 1.08874 1.08164 1.73128 1.16368 0.78640 0.86449 0.74834 1.90683 1.82611 1.14646 1.55731 1.22363 0.99662 0.92122 1.40336 1.82819 1.09871 1.07260 1.78586 1.25107 0.98676 1.00736 1.09973 1.21686 1.00718 0.90862 0.99951 1.17915 0.88208 0.93572 0.87227 1.20040 0.93007 0.94281 1.33235 0.87118 1.26397 0.96044 1.00957 0.92131 1.69671 1.03479 1.37103 1.29647 0.85983 0.78207 0.80439 0.80412 1.18835 1.19875 1.17833 1.23291 0.94049 0.88115 0.97409 0.91814 0.90510 0.91742 0.89046 0.91700 0.91341 0.92270 0.75978 0.85384 0.89945 0.89754 0.84559 0.83769 0.89999 0.89656 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 9.38 37.16 0.35 -0.37 16 2 C 0.15 1.15 3.18 -67.94 -0.22 0.93 16 3 C -0.17 -1.23 9.48 37.16 0.35 -0.88 16 4 N -0.71 -6.33 5.08 -58.73 -0.30 -6.62 16 5 C 0.65 8.46 8.71 54.06 0.47 8.93 16 6 O -0.57 -9.29 15.22 -19.28 -0.29 -9.58 16 7 O -0.35 -4.69 10.33 -40.32 -0.42 -5.11 16 8 C 0.07 0.98 4.64 -26.08 -0.12 0.86 16 9 C 0.11 1.82 8.46 -8.52 -0.07 1.75 16 10 N -0.65 -13.32 3.69 -186.83 -0.69 -14.01 16 11 C 0.64 16.16 8.01 -13.05 -0.10 16.05 16 12 O -0.55 -15.60 15.23 5.13 0.08 -15.52 16 13 C -0.43 -11.04 6.50 -35.88 -0.23 -11.27 16 14 S -0.04 -0.89 19.96 -107.50 -2.15 -3.03 16 15 C -0.21 -4.66 11.07 28.86 0.32 -4.34 16 16 C -0.10 -2.46 9.04 -39.12 -0.35 -2.81 16 17 C 0.14 3.83 5.68 -106.21 -0.60 3.23 16 18 C -0.37 -10.17 8.51 -37.94 -0.32 -10.50 16 19 H 0.11 3.15 6.04 -52.48 -0.32 2.83 16 20 C 0.07 1.63 5.39 -17.28 -0.09 1.54 16 21 N -0.77 -18.78 10.82 55.57 0.60 -18.18 16 22 Si 0.93 18.59 29.57 -169.99 -5.03 13.56 16 23 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.25 -5.16 7.11 56.52 0.40 -4.76 16 26 C 0.10 1.62 7.10 -8.39 -0.06 1.56 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.83 7.58 -51.93 -0.39 0.44 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.41 2.63 8.71 -40.82 -0.36 2.27 16 35 H 0.13 2.07 7.07 -51.93 -0.37 1.70 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 38 H 0.14 2.55 8.06 -52.49 -0.42 2.13 16 39 H 0.14 3.50 6.40 -52.49 -0.34 3.17 16 40 H 0.29 6.25 8.29 -40.82 -0.34 5.91 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.09 1.58 6.31 -51.93 -0.33 1.25 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -31.98 368.11 -8.79 -40.77 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.46 Total: 7.48 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -0.69 Total: 4.70 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: -0.39 Total: -38.81 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.63 Total: -30.21 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.15 Total: -3.03 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.98 -8.79 -40.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868353262.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.775 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds