Wall clock time and date at job start Tue Mar 31 2020 21:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46883 * 2 1 4 4 C 1.50699 * 109.47191 * 120.00157 * 2 1 3 5 5 O 1.21267 * 120.00343 * 120.00290 * 4 2 1 6 6 N 1.34778 * 119.99598 * 299.99444 * 4 2 1 7 7 C 1.39272 * 119.99905 * 184.85498 * 6 4 2 8 8 C 1.39671 * 119.57768 * 174.57567 * 7 6 4 9 9 C 1.38650 * 119.49611 * 179.97438 * 8 7 6 10 10 C 1.38341 * 118.67148 * 0.02562 * 9 8 7 11 11 C 1.40586 * 119.13034 * 359.97438 * 10 9 8 12 12 C 1.41337 * 119.78745 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00061 * 359.97438 * 12 11 10 14 14 C 1.40029 * 119.99826 * 180.02562 * 12 11 10 15 15 N 1.30737 * 119.99938 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99817 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47326 * 89.99944 * 16 14 12 18 18 H 1.48505 * 109.46795 * 209.99990 * 16 14 12 19 19 H 1.48504 * 109.47311 * 329.99677 * 16 14 12 20 20 N 1.31906 * 119.57216 * 354.31028 * 7 6 4 21 21 S 1.81397 * 109.46921 * 239.99862 * 2 1 3 22 22 O 1.42109 * 108.57963 * 174.48209 * 21 2 1 23 23 O 1.42098 * 108.58191 * 305.51020 * 21 2 1 24 24 C 1.81397 * 101.92301 * 60.00080 * 21 2 1 25 25 C 1.53000 * 117.49765 * 253.62070 * 24 21 2 26 26 C 1.53001 * 60.00165 * 252.50633 * 25 24 21 27 27 H 1.08997 * 109.47148 * 300.00036 * 1 2 3 28 28 H 1.09001 * 109.47140 * 60.00242 * 1 2 3 29 29 H 1.09009 * 109.46817 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46555 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47035 * 299.99822 * 3 2 1 32 32 H 1.08997 * 109.47258 * 60.00031 * 3 2 1 33 33 H 0.96998 * 120.00534 * 5.14038 * 6 4 2 34 34 H 1.08006 * 120.24982 * 359.96770 * 8 7 6 35 35 H 1.08002 * 120.66596 * 180.02562 * 9 8 7 36 36 H 1.08005 * 120.43607 * 179.97438 * 10 9 8 37 37 H 0.97006 * 119.99948 * 180.02562 * 15 14 12 38 38 H 1.08999 * 115.55354 * 39.32740 * 24 21 2 39 39 H 1.08999 * 117.50009 * 359.97438 * 25 24 21 40 40 H 1.09005 * 117.49845 * 145.02190 * 25 24 21 41 41 H 1.09001 * 117.49777 * 252.51139 * 26 25 24 42 42 H 1.08995 * 117.49403 * 107.48547 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6964 1.1192 6 7 1.7068 -0.2499 2.4545 7 6 2.2521 -0.8442 3.5899 8 6 1.9998 -0.2901 4.8469 9 6 2.5431 -0.8835 5.9761 10 6 3.3246 -2.0144 5.8208 11 6 3.5417 -2.5241 4.5287 12 6 4.3383 -3.6784 4.3539 13 1 4.7783 -4.1658 5.2114 14 6 4.5578 -4.1896 3.0689 15 7 4.0256 -3.5993 2.0308 16 14 5.6101 -5.7156 2.8379 17 1 4.7499 -6.9244 2.9021 18 1 6.2837 -5.6569 1.5157 19 1 6.6333 -5.7786 3.9124 20 7 2.9960 -1.9263 3.4647 21 16 2.1346 -0.8552 -1.4811 22 8 3.5497 -0.7330 -1.5286 23 8 1.5479 -2.1485 -1.5284 24 6 1.4229 0.1514 -2.8118 25 6 0.2446 -0.4376 -3.5901 26 6 1.6217 -0.3346 -4.2489 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.0895 0.4929 2.5450 34 1 1.3862 0.5940 4.9385 35 1 2.3598 -0.4711 6.9573 36 1 3.7622 -2.4994 6.6809 37 1 4.1774 -3.9536 1.1406 38 1 1.4251 1.2277 -2.6398 39 1 -0.1026 -1.4300 -3.3028 40 1 -0.5287 0.2513 -3.9301 41 1 1.7543 0.4220 -5.0223 42 1 2.1801 -1.2592 -4.3947 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882472945.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:10 Heat of formation + Delta-G solvation = -12.075123 kcal Electronic energy + Delta-G solvation = -28357.323062 eV Core-core repulsion = 24432.235347 eV Total energy + Delta-G solvation = -3925.087715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.73892 -37.74781 -37.42591 -36.69873 -35.77605 -34.78210 -34.20756 -32.98397 -30.31684 -28.99432 -27.62390 -25.60579 -24.18631 -23.56494 -22.90268 -21.99749 -21.25808 -19.53722 -18.48141 -17.98979 -17.17998 -16.80914 -16.16098 -15.66988 -15.61100 -15.15533 -14.61781 -14.51224 -14.45942 -13.91395 -13.70416 -13.59140 -13.16791 -13.08232 -12.82328 -12.56604 -12.22138 -12.10272 -12.01347 -11.91541 -11.80808 -11.72973 -11.45884 -11.31159 -11.27570 -11.10430 -10.92437 -10.66954 -10.63887 -10.46226 -10.23767 -9.92255 -9.74734 -9.25304 -9.03397 -7.98429 -7.27146 -7.02821 -6.11980 -4.38707 0.03573 2.68422 2.73254 3.01674 3.04844 3.22918 3.26112 3.28191 3.39450 3.49945 3.89535 4.11304 4.14908 4.32736 4.42537 4.49844 4.53601 4.85692 4.88416 4.96658 5.16069 5.19527 5.27153 5.40604 5.41892 5.44367 5.51382 5.64014 5.82824 5.93910 6.03109 6.08693 6.44953 6.59868 6.78300 6.83664 7.24638 7.49063 7.57872 7.79620 7.96180 8.15520 8.41189 8.68579 9.00478 9.07269 10.22292 10.51087 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013398 B = 0.004689 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.410153 B = 5970.371833 C = 7641.387544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.574 4.574 3 C -0.135 4.135 4 C 0.508 3.492 5 O -0.397 6.397 6 N -0.650 5.650 7 C 0.369 3.631 8 C -0.356 4.356 9 C -0.036 4.036 10 C -0.303 4.303 11 C 0.269 3.731 12 C -0.420 4.420 13 H 0.084 0.916 14 C 0.056 3.944 15 N -0.654 5.654 16 Si 0.897 3.103 17 H -0.270 1.270 18 H -0.276 1.276 19 H -0.263 1.263 20 N -0.474 5.474 21 S 2.482 3.518 22 O -0.914 6.914 23 O -0.915 6.915 24 C -0.685 4.685 25 C -0.127 4.127 26 C -0.125 4.125 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.401 0.599 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.277 0.723 38 H 0.159 0.841 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.105 10.881 -11.613 18.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.666 4.666 3 C -0.193 4.193 4 C 0.287 3.713 5 O -0.260 6.260 6 N -0.297 5.297 7 C 0.130 3.870 8 C -0.382 4.382 9 C -0.060 4.060 10 C -0.326 4.326 11 C 0.145 3.855 12 C -0.451 4.451 13 H 0.102 0.898 14 C -0.174 4.174 15 N -0.273 5.273 16 Si 0.721 3.279 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.187 1.187 20 N -0.192 5.192 21 S 2.657 3.343 22 O -0.911 6.911 23 O -0.912 6.912 24 C -0.791 4.791 25 C -0.165 4.165 26 C -0.163 4.163 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.235 0.765 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.176 0.824 39 H 0.138 0.862 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.878 9.016 -12.889 17.592 hybrid contribution -0.591 1.236 1.024 1.710 sum -8.469 10.251 -11.865 17.821 Atomic orbital electron populations 1.21705 0.88309 1.04777 1.04376 1.30538 1.07930 1.10489 1.17611 1.21741 1.03146 0.90110 1.04299 1.19253 0.83168 0.85635 0.83253 1.91290 1.30628 1.20101 1.84022 1.43058 1.46944 1.35513 1.04169 1.18556 0.93041 0.91932 0.83462 1.20417 1.18086 1.07577 0.92165 1.20547 0.94914 0.94556 0.95969 1.21624 1.10769 1.02229 0.97992 1.18364 0.89651 0.91693 0.85806 1.19618 1.24660 1.07329 0.93445 0.89818 1.26188 0.96579 0.98343 0.96309 1.70235 1.26643 1.31398 0.98995 0.86502 0.80587 0.82164 0.78669 1.19548 1.20101 1.18722 1.68650 1.12394 1.06993 1.31207 1.06700 0.75661 0.75694 0.76246 1.93568 1.26188 1.86312 1.85074 1.93554 1.79499 1.33003 1.85186 1.32506 1.17838 1.15920 1.12823 1.22898 0.90868 1.03135 0.99572 1.22769 0.99856 1.03260 0.90455 0.90147 0.90530 0.89976 0.89955 0.90845 0.89900 0.76503 0.89114 0.88571 0.88482 0.91142 0.82351 0.86167 0.86996 0.86791 0.87435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 8.14 37.16 0.30 -1.11 16 2 C -0.57 -8.29 0.72 -91.77 -0.07 -8.36 16 3 C -0.14 -1.47 8.15 37.16 0.30 -1.17 16 4 C 0.51 10.53 6.46 -10.99 -0.07 10.46 16 5 O -0.40 -10.47 11.40 2.57 0.03 -10.44 16 6 N -0.65 -12.80 5.16 -11.40 -0.06 -12.86 16 7 C 0.37 9.07 7.43 -154.97 -1.15 7.92 16 8 C -0.36 -7.98 9.95 -38.89 -0.39 -8.36 16 9 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 10 C -0.30 -7.69 9.83 -38.66 -0.38 -8.07 16 11 C 0.27 7.70 6.55 -85.00 -0.56 7.14 16 12 C -0.42 -11.81 9.14 -37.73 -0.34 -12.15 16 13 H 0.08 2.19 7.85 -52.49 -0.41 1.77 16 14 C 0.06 1.52 5.50 -17.35 -0.10 1.43 16 15 N -0.65 -19.14 9.00 55.55 0.50 -18.64 16 16 Si 0.90 20.11 29.56 -169.99 -5.02 15.09 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 20 N -0.47 -13.57 5.74 -10.25 -0.06 -13.63 16 21 S 2.48 40.20 3.40 -107.50 -0.37 39.84 16 22 O -0.91 -18.55 17.76 -59.52 -1.06 -19.60 16 23 O -0.92 -17.70 16.91 -59.53 -1.01 -18.71 16 24 C -0.68 -6.75 4.97 -26.73 -0.13 -6.88 16 25 C -0.13 -1.02 10.12 -26.73 -0.27 -1.29 16 26 C -0.13 -1.09 10.30 -26.73 -0.28 -1.36 16 27 H 0.08 0.71 7.46 -51.93 -0.39 0.32 16 28 H 0.08 0.53 7.30 -51.93 -0.38 0.15 16 29 H 0.08 0.98 8.06 -51.92 -0.42 0.57 16 30 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 31 H 0.07 0.50 6.34 -51.93 -0.33 0.17 16 32 H 0.08 0.76 7.69 -51.93 -0.40 0.36 16 33 H 0.40 5.90 7.56 -40.82 -0.31 5.59 16 34 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 35 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 36 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 37 H 0.28 7.76 8.29 -40.82 -0.34 7.42 16 38 H 0.16 1.08 6.50 -51.93 -0.34 0.75 16 39 H 0.12 1.05 7.57 -51.93 -0.39 0.65 16 40 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 358.92 15.07 5.41 5.41 Total: -1.00 -38.65 358.92 -10.61 -49.26 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.45 Total: 7.32 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -3.52 Total: -23.02 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.38 Total: -45.13 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -2.03 Total: -48.75 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 40.20 SS G_CDS: -0.37 Total: 39.84 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -38.65 -10.61 -49.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472945.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.185 kcal (2) G-P(sol) polarization free energy of solvation -38.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds