Wall clock time and date at job start Tue Mar 31 2020 21:06:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53004 * 109.46883 * 2 1
4 4 C 1.50699 * 109.47191 * 120.00157 * 2 1 3
5 5 O 1.21267 * 120.00343 * 120.00290 * 4 2 1
6 6 N 1.34778 * 119.99598 * 299.99444 * 4 2 1
7 7 C 1.39272 * 119.99905 * 184.85498 * 6 4 2
8 8 C 1.39671 * 119.57768 * 174.57567 * 7 6 4
9 9 C 1.38650 * 119.49611 * 179.97438 * 8 7 6
10 10 C 1.38341 * 118.67148 * 0.02562 * 9 8 7
11 11 C 1.40586 * 119.13034 * 359.97438 * 10 9 8
12 12 C 1.41337 * 119.78745 * 179.97438 * 11 10 9
13 13 H 1.08002 * 120.00061 * 359.97438 * 12 11 10
14 14 C 1.40029 * 119.99826 * 180.02562 * 12 11 10
15 15 N 1.30737 * 119.99938 * 359.97438 * 14 12 11
16 16 Si 1.86795 * 119.99817 * 180.02562 * 14 12 11
17 17 H 1.48500 * 109.47326 * 89.99944 * 16 14 12
18 18 H 1.48505 * 109.46795 * 209.99990 * 16 14 12
19 19 H 1.48504 * 109.47311 * 329.99677 * 16 14 12
20 20 N 1.31906 * 119.57216 * 354.31028 * 7 6 4
21 21 S 1.81397 * 109.46921 * 239.99862 * 2 1 3
22 22 O 1.42109 * 108.57963 * 174.48209 * 21 2 1
23 23 O 1.42098 * 108.58191 * 305.51020 * 21 2 1
24 24 C 1.81397 * 101.92301 * 60.00080 * 21 2 1
25 25 C 1.53000 * 117.49765 * 253.62070 * 24 21 2
26 26 C 1.53001 * 60.00165 * 252.50633 * 25 24 21
27 27 H 1.08997 * 109.47148 * 300.00036 * 1 2 3
28 28 H 1.09001 * 109.47140 * 60.00242 * 1 2 3
29 29 H 1.09009 * 109.46817 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.46555 * 180.02562 * 3 2 1
31 31 H 1.09001 * 109.47035 * 299.99822 * 3 2 1
32 32 H 1.08997 * 109.47258 * 60.00031 * 3 2 1
33 33 H 0.96998 * 120.00534 * 5.14038 * 6 4 2
34 34 H 1.08006 * 120.24982 * 359.96770 * 8 7 6
35 35 H 1.08002 * 120.66596 * 180.02562 * 9 8 7
36 36 H 1.08005 * 120.43607 * 179.97438 * 10 9 8
37 37 H 0.97006 * 119.99948 * 180.02562 * 15 14 12
38 38 H 1.08999 * 115.55354 * 39.32740 * 24 21 2
39 39 H 1.08999 * 117.50009 * 359.97438 * 25 24 21
40 40 H 1.09005 * 117.49845 * 145.02190 * 25 24 21
41 41 H 1.09001 * 117.49777 * 252.51139 * 26 25 24
42 42 H 1.08995 * 117.49403 * 107.48547 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0324 -0.7104 1.2304
5 8 2.7296 -1.6964 1.1192
6 7 1.7068 -0.2499 2.4545
7 6 2.2521 -0.8442 3.5899
8 6 1.9998 -0.2901 4.8469
9 6 2.5431 -0.8835 5.9761
10 6 3.3246 -2.0144 5.8208
11 6 3.5417 -2.5241 4.5287
12 6 4.3383 -3.6784 4.3539
13 1 4.7783 -4.1658 5.2114
14 6 4.5578 -4.1896 3.0689
15 7 4.0256 -3.5993 2.0308
16 14 5.6101 -5.7156 2.8379
17 1 4.7499 -6.9244 2.9021
18 1 6.2837 -5.6569 1.5157
19 1 6.6333 -5.7786 3.9124
20 7 2.9960 -1.9263 3.4647
21 16 2.1346 -0.8552 -1.4811
22 8 3.5497 -0.7330 -1.5286
23 8 1.5479 -2.1485 -1.5284
24 6 1.4229 0.1514 -2.8118
25 6 0.2446 -0.4376 -3.5901
26 6 1.6217 -0.3346 -4.2489
27 1 -0.3633 0.5138 0.8899
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0278 0.0005
30 1 3.1300 1.4425 -0.0005
31 1 1.6766 1.9563 -0.8900
32 1 1.6766 1.9564 0.8899
33 1 1.0895 0.4929 2.5450
34 1 1.3862 0.5940 4.9385
35 1 2.3598 -0.4711 6.9573
36 1 3.7622 -2.4994 6.6809
37 1 4.1774 -3.9536 1.1406
38 1 1.4251 1.2277 -2.6398
39 1 -0.1026 -1.4300 -3.3028
40 1 -0.5287 0.2513 -3.9301
41 1 1.7543 0.4220 -5.0223
42 1 2.1801 -1.2592 -4.3947
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000882472945.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:06:10
Heat of formation + Delta-G solvation = -12.075123 kcal
Electronic energy + Delta-G solvation = -28357.323062 eV
Core-core repulsion = 24432.235347 eV
Total energy + Delta-G solvation = -3925.087715 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 338.113 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-39.73892 -37.74781 -37.42591 -36.69873 -35.77605 -34.78210 -34.20756 -32.98397
-30.31684 -28.99432 -27.62390 -25.60579 -24.18631 -23.56494 -22.90268 -21.99749
-21.25808 -19.53722 -18.48141 -17.98979 -17.17998 -16.80914 -16.16098 -15.66988
-15.61100 -15.15533 -14.61781 -14.51224 -14.45942 -13.91395 -13.70416 -13.59140
-13.16791 -13.08232 -12.82328 -12.56604 -12.22138 -12.10272 -12.01347 -11.91541
-11.80808 -11.72973 -11.45884 -11.31159 -11.27570 -11.10430 -10.92437 -10.66954
-10.63887 -10.46226 -10.23767 -9.92255 -9.74734 -9.25304 -9.03397 -7.98429
-7.27146 -7.02821 -6.11980 -4.38707 0.03573 2.68422 2.73254 3.01674
3.04844 3.22918 3.26112 3.28191 3.39450 3.49945 3.89535 4.11304
4.14908 4.32736 4.42537 4.49844 4.53601 4.85692 4.88416 4.96658
5.16069 5.19527 5.27153 5.40604 5.41892 5.44367 5.51382 5.64014
5.82824 5.93910 6.03109 6.08693 6.44953 6.59868 6.78300 6.83664
7.24638 7.49063 7.57872 7.79620 7.96180 8.15520 8.41189 8.68579
9.00478 9.07269 10.22292 10.51087
Molecular weight = 338.11amu
Principal moments of inertia in cm(-1)
A = 0.013398 B = 0.004689 C = 0.003663
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2089.410153 B = 5970.371833 C = 7641.387544
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.574 4.574
3 C -0.135 4.135
4 C 0.508 3.492
5 O -0.397 6.397
6 N -0.650 5.650
7 C 0.369 3.631
8 C -0.356 4.356
9 C -0.036 4.036
10 C -0.303 4.303
11 C 0.269 3.731
12 C -0.420 4.420
13 H 0.084 0.916
14 C 0.056 3.944
15 N -0.654 5.654
16 Si 0.897 3.103
17 H -0.270 1.270
18 H -0.276 1.276
19 H -0.263 1.263
20 N -0.474 5.474
21 S 2.482 3.518
22 O -0.914 6.914
23 O -0.915 6.915
24 C -0.685 4.685
25 C -0.127 4.127
26 C -0.125 4.125
27 H 0.080 0.920
28 H 0.076 0.924
29 H 0.081 0.919
30 H 0.081 0.919
31 H 0.073 0.927
32 H 0.082 0.918
33 H 0.401 0.599
34 H 0.091 0.909
35 H 0.096 0.904
36 H 0.097 0.903
37 H 0.277 0.723
38 H 0.159 0.841
39 H 0.120 0.880
40 H 0.112 0.888
41 H 0.114 0.886
42 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.105 10.881 -11.613 18.335
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.666 4.666
3 C -0.193 4.193
4 C 0.287 3.713
5 O -0.260 6.260
6 N -0.297 5.297
7 C 0.130 3.870
8 C -0.382 4.382
9 C -0.060 4.060
10 C -0.326 4.326
11 C 0.145 3.855
12 C -0.451 4.451
13 H 0.102 0.898
14 C -0.174 4.174
15 N -0.273 5.273
16 Si 0.721 3.279
17 H -0.195 1.195
18 H -0.201 1.201
19 H -0.187 1.187
20 N -0.192 5.192
21 S 2.657 3.343
22 O -0.911 6.911
23 O -0.912 6.912
24 C -0.791 4.791
25 C -0.165 4.165
26 C -0.163 4.163
27 H 0.099 0.901
28 H 0.095 0.905
29 H 0.100 0.900
30 H 0.100 0.900
31 H 0.092 0.908
32 H 0.101 0.899
33 H 0.235 0.765
34 H 0.109 0.891
35 H 0.114 0.886
36 H 0.115 0.885
37 H 0.089 0.911
38 H 0.176 0.824
39 H 0.138 0.862
40 H 0.130 0.870
41 H 0.132 0.868
42 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges -7.878 9.016 -12.889 17.592
hybrid contribution -0.591 1.236 1.024 1.710
sum -8.469 10.251 -11.865 17.821
Atomic orbital electron populations
1.21705 0.88309 1.04777 1.04376 1.30538 1.07930 1.10489 1.17611
1.21741 1.03146 0.90110 1.04299 1.19253 0.83168 0.85635 0.83253
1.91290 1.30628 1.20101 1.84022 1.43058 1.46944 1.35513 1.04169
1.18556 0.93041 0.91932 0.83462 1.20417 1.18086 1.07577 0.92165
1.20547 0.94914 0.94556 0.95969 1.21624 1.10769 1.02229 0.97992
1.18364 0.89651 0.91693 0.85806 1.19618 1.24660 1.07329 0.93445
0.89818 1.26188 0.96579 0.98343 0.96309 1.70235 1.26643 1.31398
0.98995 0.86502 0.80587 0.82164 0.78669 1.19548 1.20101 1.18722
1.68650 1.12394 1.06993 1.31207 1.06700 0.75661 0.75694 0.76246
1.93568 1.26188 1.86312 1.85074 1.93554 1.79499 1.33003 1.85186
1.32506 1.17838 1.15920 1.12823 1.22898 0.90868 1.03135 0.99572
1.22769 0.99856 1.03260 0.90455 0.90147 0.90530 0.89976 0.89955
0.90845 0.89900 0.76503 0.89114 0.88571 0.88482 0.91142 0.82351
0.86167 0.86996 0.86791 0.87435
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.41 8.14 37.16 0.30 -1.11 16
2 C -0.57 -8.29 0.72 -91.77 -0.07 -8.36 16
3 C -0.14 -1.47 8.15 37.16 0.30 -1.17 16
4 C 0.51 10.53 6.46 -10.99 -0.07 10.46 16
5 O -0.40 -10.47 11.40 2.57 0.03 -10.44 16
6 N -0.65 -12.80 5.16 -11.40 -0.06 -12.86 16
7 C 0.37 9.07 7.43 -154.97 -1.15 7.92 16
8 C -0.36 -7.98 9.95 -38.89 -0.39 -8.36 16
9 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16
10 C -0.30 -7.69 9.83 -38.66 -0.38 -8.07 16
11 C 0.27 7.70 6.55 -85.00 -0.56 7.14 16
12 C -0.42 -11.81 9.14 -37.73 -0.34 -12.15 16
13 H 0.08 2.19 7.85 -52.49 -0.41 1.77 16
14 C 0.06 1.52 5.50 -17.35 -0.10 1.43 16
15 N -0.65 -19.14 9.00 55.55 0.50 -18.64 16
16 Si 0.90 20.11 29.56 -169.99 -5.02 15.09 16
17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16
18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16
19 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16
20 N -0.47 -13.57 5.74 -10.25 -0.06 -13.63 16
21 S 2.48 40.20 3.40 -107.50 -0.37 39.84 16
22 O -0.91 -18.55 17.76 -59.52 -1.06 -19.60 16
23 O -0.92 -17.70 16.91 -59.53 -1.01 -18.71 16
24 C -0.68 -6.75 4.97 -26.73 -0.13 -6.88 16
25 C -0.13 -1.02 10.12 -26.73 -0.27 -1.29 16
26 C -0.13 -1.09 10.30 -26.73 -0.28 -1.36 16
27 H 0.08 0.71 7.46 -51.93 -0.39 0.32 16
28 H 0.08 0.53 7.30 -51.93 -0.38 0.15 16
29 H 0.08 0.98 8.06 -51.92 -0.42 0.57 16
30 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16
31 H 0.07 0.50 6.34 -51.93 -0.33 0.17 16
32 H 0.08 0.76 7.69 -51.93 -0.40 0.36 16
33 H 0.40 5.90 7.56 -40.82 -0.31 5.59 16
34 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16
35 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16
36 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16
37 H 0.28 7.76 8.29 -40.82 -0.34 7.42 16
38 H 0.16 1.08 6.50 -51.93 -0.34 0.75 16
39 H 0.12 1.05 7.57 -51.93 -0.39 0.65 16
40 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16
41 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16
42 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16
LS Contribution 358.92 15.07 5.41 5.41
Total: -1.00 -38.65 358.92 -10.61 -49.26
By element:
Atomic # 1 Polarization: 12.77 SS G_CDS: -5.45 Total: 7.32 kcal
Atomic # 6 Polarization: -19.50 SS G_CDS: -3.52 Total: -23.02 kcal
Atomic # 7 Polarization: -45.51 SS G_CDS: 0.38 Total: -45.13 kcal
Atomic # 8 Polarization: -46.72 SS G_CDS: -2.03 Total: -48.75 kcal
Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal
Atomic # 16 Polarization: 40.20 SS G_CDS: -0.37 Total: 39.84 kcal
Total LS contribution 5.41 Total: 5.41 kcal
Total: -38.65 -10.61 -49.26 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000882472945.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.185 kcal
(2) G-P(sol) polarization free energy of solvation -38.648 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.463 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.260 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.075 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds