Wall clock time and date at job start Tue Mar 31 2020 20:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31782 * 122.74962 * 2 1 4 4 C 1.29025 * 117.12377 * 180.33297 * 3 2 1 5 5 C 1.50698 * 124.91981 * 179.67790 * 4 3 2 6 6 C 1.53788 * 113.61151 * 39.18086 * 5 4 3 7 7 C 1.53956 * 87.01735 * 220.04913 * 6 5 4 8 8 C 1.53782 * 87.11387 * 25.36417 * 7 6 5 9 9 S 1.70976 * 110.16761 * 359.71708 * 4 3 2 10 10 C 1.33638 * 122.74964 * 179.79951 * 2 1 3 11 11 C 1.50697 * 126.04017 * 359.97438 * 10 2 1 12 12 C 1.50700 * 109.47266 * 89.71367 * 11 10 2 13 13 O 1.20822 * 119.99958 * 0.02562 * 12 11 10 14 14 O 1.34234 * 120.00068 * 180.02562 * 12 11 10 15 15 C 1.45196 * 116.99938 * 179.97438 * 14 12 11 16 16 C 1.50704 * 109.47016 * 179.97438 * 15 14 12 17 17 O 1.21296 * 119.99980 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99643 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99435 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00513 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99989 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00329 * 179.97438 * 21 19 18 23 23 Si 1.86811 * 119.99623 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46608 * 90.00320 * 23 21 19 25 25 H 1.48496 * 109.46721 * 209.99686 * 23 21 19 26 26 H 1.48495 * 109.47324 * 330.00392 * 23 21 19 27 27 H 1.09005 * 109.47033 * 270.19754 * 1 2 3 28 28 H 1.08990 * 109.47351 * 30.20099 * 1 2 3 29 29 H 1.09004 * 109.47128 * 150.20128 * 1 2 3 30 30 H 1.09001 * 112.85588 * 170.37337 * 5 4 3 31 31 H 1.09007 * 113.61107 * 334.56949 * 6 5 4 32 32 H 1.08999 * 113.61440 * 105.47044 * 6 5 4 33 33 H 1.08996 * 113.53905 * 270.80875 * 7 6 5 34 34 H 1.09008 * 113.74079 * 139.94161 * 7 6 5 35 35 H 1.08998 * 113.60885 * 220.09272 * 8 7 6 36 36 H 1.08992 * 113.61338 * 89.18486 * 8 7 6 37 37 H 1.09004 * 109.47205 * 329.71461 * 11 10 2 38 38 H 1.08997 * 109.47395 * 209.71953 * 11 10 2 39 39 H 1.08996 * 109.47465 * 299.99911 * 15 14 12 40 40 H 1.08999 * 109.47008 * 59.99921 * 15 14 12 41 41 H 0.96994 * 120.00272 * 359.97438 * 18 16 15 42 42 H 0.96999 * 119.99442 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9819 -0.0067 5 6 4.4835 2.1270 -0.0148 6 6 4.0587 3.3073 0.8749 7 6 4.5788 4.2314 -0.2413 8 6 4.3167 3.0718 -1.2167 9 16 3.9332 -0.6731 -0.0061 10 6 2.2299 -1.1239 0.0039 11 6 1.6847 -2.5288 0.0094 12 6 1.4958 -2.9999 -1.4096 13 8 1.7757 -2.2699 -2.3308 14 8 1.0166 -4.2305 -1.6501 15 6 0.8602 -4.6168 -3.0409 16 6 0.3154 -6.0200 -3.1143 17 8 0.0824 -6.6343 -2.0946 18 7 0.0880 -6.5927 -4.3129 19 6 -0.4081 -7.8691 -4.3797 20 1 -0.6163 -8.4157 -3.4718 21 6 -0.6430 -8.4595 -5.6154 22 7 -1.1180 -9.6831 -5.6794 23 14 -0.2835 -7.5137 -7.1858 24 1 1.1171 -7.7697 -7.6080 25 1 -1.2122 -7.9592 -8.2554 26 1 -0.4693 -6.0607 -6.9421 27 1 -0.3633 0.0035 1.0277 28 1 -0.3633 0.8881 -0.5169 29 1 -0.3633 -0.8918 -0.5107 30 1 5.5121 1.8054 0.1484 31 1 2.9815 3.3723 1.0291 32 1 4.6254 3.3805 1.8031 33 1 5.6336 4.4863 -0.1392 34 1 3.9481 5.1026 -0.4192 35 1 5.0914 2.9552 -1.9745 36 1 3.3103 3.0723 -1.6353 37 1 0.7261 -2.5446 0.5281 38 1 2.3854 -3.1886 0.5210 39 1 0.1691 -3.9322 -3.5326 40 1 1.8282 -4.5767 -3.5402 41 1 0.2747 -6.1017 -5.1283 42 1 -1.2823 -10.0949 -6.5421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884812665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:58 Heat of formation + Delta-G solvation = -58.713863 kcal Electronic energy + Delta-G solvation = -25610.194635 eV Core-core repulsion = 21683.084513 eV Total energy + Delta-G solvation = -3927.110122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.76679 -40.21752 -38.69068 -38.30029 -36.27571 -34.08093 -33.55298 -31.82016 -30.64706 -28.66021 -27.82668 -26.03362 -25.92058 -24.38171 -23.03893 -21.38680 -20.22540 -19.66959 -18.67078 -18.42824 -18.31460 -17.76958 -16.69352 -16.38807 -16.14859 -15.62697 -15.52859 -15.06916 -14.77113 -14.42296 -14.24818 -13.65110 -13.45111 -13.30315 -13.20823 -12.95563 -12.92652 -12.79741 -12.48318 -12.30470 -12.23323 -12.18497 -12.14253 -11.35178 -11.27943 -11.26980 -10.94405 -10.84524 -10.66719 -10.57673 -10.56475 -10.06704 -9.76514 -9.69401 -9.46285 -8.81269 -8.68244 -8.31078 -6.40865 -3.93821 0.39550 1.08552 1.50787 2.16745 2.38839 2.75891 2.97472 3.02203 3.11004 3.53310 3.70084 4.02276 4.23149 4.24840 4.31529 4.34355 4.42627 4.47517 4.69307 4.85559 4.95817 5.09215 5.13876 5.15740 5.17569 5.29622 5.35212 5.38100 5.44337 5.51592 5.53471 5.54054 5.57341 5.64927 5.65456 5.74507 6.02103 6.10225 6.46025 7.42860 7.52393 7.74282 7.99083 8.45983 8.81942 9.28129 9.63540 10.71333 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.024285 B = 0.002025 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.680720 B =13827.068558 C =14296.845200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.088 3.912 3 N -0.468 5.468 4 C 0.065 3.935 5 C -0.044 4.044 6 C -0.119 4.119 7 C -0.141 4.141 8 C -0.121 4.121 9 S 0.132 5.868 10 C -0.222 4.222 11 C -0.032 4.032 12 C 0.458 3.542 13 O -0.503 6.503 14 O -0.323 6.323 15 C 0.059 3.941 16 C 0.447 3.553 17 O -0.557 6.557 18 N -0.579 5.579 19 C -0.309 4.309 20 H 0.123 0.877 21 C 0.045 3.955 22 N -0.874 5.874 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.274 1.274 26 H -0.268 1.268 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.373 0.627 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.347 26.418 11.296 30.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.044 4.044 3 N -0.182 5.182 4 C -0.213 4.213 5 C -0.066 4.066 6 C -0.159 4.159 7 C -0.179 4.179 8 C -0.161 4.161 9 S 0.391 5.609 10 C -0.343 4.343 11 C -0.072 4.072 12 C 0.299 3.701 13 O -0.391 6.391 14 O -0.237 6.237 15 C -0.019 4.019 16 C 0.232 3.768 17 O -0.439 6.439 18 N -0.219 5.219 19 C -0.437 4.437 20 H 0.140 0.860 21 C -0.159 4.159 22 N -0.513 5.513 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.199 1.199 26 H -0.194 1.194 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.127 0.873 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.206 0.794 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.944 25.938 11.559 30.806 hybrid contribution -0.607 0.495 -1.651 1.828 sum 11.337 26.432 9.907 30.420 Atomic orbital electron populations 1.20402 0.87042 1.03685 1.02967 1.20103 0.98078 0.85953 1.00305 1.65995 1.04369 1.31295 1.16519 1.26745 0.94222 0.97438 1.02880 1.21354 0.95730 0.89446 1.00078 1.22960 1.02609 0.93426 0.96864 1.22846 1.01463 0.97204 0.96371 1.22939 1.03126 0.94428 0.95564 1.83907 1.06453 1.02796 1.67717 1.24920 0.95478 0.98772 1.15124 1.19565 1.05006 0.90686 0.91984 1.23513 0.74197 0.80032 0.92356 1.90678 1.46739 1.55475 1.46213 1.86549 1.75275 1.31845 1.30070 1.22759 1.02562 0.96921 0.79674 1.19184 0.85769 0.86991 0.84841 1.90606 1.55286 1.64162 1.33827 1.42037 1.58853 1.15480 1.05534 1.19426 1.39674 0.88044 0.96532 0.85983 1.25040 0.97032 0.95887 0.97912 1.69613 1.42866 1.12682 1.26169 0.86684 0.79394 0.79835 0.83624 1.19396 1.19917 1.19371 0.90298 0.90336 0.90798 0.87281 0.88717 0.91131 0.89967 0.90897 0.90951 0.89156 0.85345 0.86191 0.89405 0.89438 0.79393 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 9.82 36.00 0.35 -0.42 16 2 C 0.09 1.03 6.74 -84.23 -0.57 0.46 16 3 N -0.47 -5.54 10.07 -8.06 -0.08 -5.62 16 4 C 0.06 0.67 6.47 -13.46 -0.09 0.58 16 5 C -0.04 -0.34 4.24 -90.95 -0.39 -0.72 16 6 C -0.12 -0.80 7.63 -25.82 -0.20 -1.00 16 7 C -0.14 -0.80 8.09 -25.83 -0.21 -1.01 16 8 C -0.12 -0.88 7.63 -25.92 -0.20 -1.08 16 9 S 0.13 1.36 23.18 -107.50 -2.49 -1.13 16 10 C -0.22 -2.53 5.08 -35.92 -0.18 -2.71 16 11 C -0.03 -0.35 5.74 -29.04 -0.17 -0.51 16 12 C 0.46 6.68 7.95 36.01 0.29 6.97 16 13 O -0.50 -8.40 15.78 -18.75 -0.30 -8.69 16 14 O -0.32 -5.58 9.76 -45.91 -0.45 -6.03 16 15 C 0.06 1.04 5.94 36.01 0.21 1.25 16 16 C 0.45 10.27 7.86 -10.98 -0.09 10.18 16 17 O -0.56 -15.14 16.08 -14.12 -0.23 -15.37 16 18 N -0.58 -13.68 5.09 -10.96 -0.06 -13.73 16 19 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 20 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 21 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 22 N -0.87 -25.01 13.96 55.50 0.77 -24.24 16 23 Si 0.88 19.00 27.74 -169.99 -4.71 14.29 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.27 -5.30 6.52 56.52 0.37 -4.94 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.70 7.36 -51.93 -0.38 0.32 16 30 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.77 7.74 -51.92 -0.40 0.37 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 37 H 0.13 1.08 7.44 -51.93 -0.39 0.69 16 38 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 40 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 41 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 42 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -34.49 374.73 -8.97 -43.46 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.61 Total: 7.05 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -1.47 Total: 4.38 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.64 Total: -43.59 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.97 Total: -30.09 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.29 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.49 Total: -1.13 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.49 -8.97 -43.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884812665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.253 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds