Wall clock time and date at job start Tue Mar 31 2020 21:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47495 * 2 1 4 4 C 1.53005 * 109.47005 * 240.00263 * 2 1 3 5 5 O 1.45194 * 109.47199 * 120.00435 * 2 1 3 6 6 C 1.34678 * 117.00230 * 60.00154 * 5 2 1 7 7 O 1.21432 * 119.99979 * 359.97438 * 6 5 2 8 8 C 1.48081 * 120.00270 * 180.02562 * 6 5 2 9 9 C 1.39115 * 119.69797 * 179.97438 * 8 6 5 10 10 C 1.39363 * 118.96599 * 179.74518 * 9 8 6 11 11 N 1.39566 * 120.82893 * 180.22718 * 10 9 8 12 12 C 1.34771 * 119.99800 * 32.54277 * 11 10 9 13 13 O 1.21275 * 120.00436 * 5.26938 * 12 11 10 14 14 C 1.50707 * 120.00034 * 185.26547 * 12 11 10 15 15 S 1.80998 * 109.47310 * 180.02562 * 14 12 11 16 16 C 1.76198 * 100.00171 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99763 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.00031 * 179.97438 * 16 15 14 19 19 N 1.31625 * 119.99809 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99914 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47296 * 59.99496 * 20 18 16 22 22 H 1.48500 * 109.47219 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47005 * 299.99820 * 20 18 16 24 24 C 1.39341 * 118.34688 * 0.25216 * 10 9 8 25 25 C 1.38311 * 119.27776 * 359.97438 * 24 10 9 26 26 N 1.31604 * 120.98745 * 0.02686 * 25 24 10 27 27 H 1.08998 * 109.46898 * 300.00106 * 1 2 3 28 28 H 1.09001 * 109.47499 * 59.99594 * 1 2 3 29 29 H 1.09000 * 109.47324 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47656 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47078 * 300.00663 * 3 2 1 32 32 H 1.08999 * 109.46674 * 60.00306 * 3 2 1 33 33 H 1.09000 * 109.46997 * 300.00099 * 4 2 1 34 34 H 1.09001 * 109.46876 * 59.99761 * 4 2 1 35 35 H 1.08998 * 109.47049 * 179.97438 * 4 2 1 36 36 H 1.08008 * 120.51510 * 0.02562 * 9 8 6 37 37 H 0.96995 * 120.00121 * 212.54599 * 11 10 9 38 38 H 1.09003 * 109.46589 * 300.00258 * 14 12 11 39 39 H 1.09000 * 109.46991 * 60.00013 * 14 12 11 40 40 H 0.97005 * 119.99838 * 180.02562 * 19 18 16 41 41 H 1.07998 * 120.36272 * 179.97438 * 24 10 9 42 42 H 1.08000 * 119.50644 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1854 6 6 1.6522 -1.9728 1.3382 7 8 0.9513 -2.5095 0.5044 8 6 2.1081 -2.7344 2.5235 9 6 1.7302 -4.0646 2.6752 10 6 2.1723 -4.7685 3.7937 11 7 1.8205 -6.1059 3.9824 12 6 1.6515 -6.9148 2.9177 13 8 1.8975 -6.5081 1.8020 14 6 1.1569 -8.3248 3.1136 15 16 1.0359 -9.1504 1.5075 16 6 0.4532 -10.7324 2.0197 17 1 0.2839 -10.9322 3.0675 18 6 0.2116 -11.7218 1.0767 19 7 0.4174 -11.4780 -0.2003 20 14 -0.4069 -13.3987 1.6197 21 1 -1.7079 -13.2439 2.3187 22 1 -0.5839 -14.2700 0.4303 23 1 0.5802 -14.0155 2.5420 24 6 2.9740 -4.1038 4.7195 25 6 3.3032 -2.7783 4.5007 26 7 2.8703 -2.1397 3.4345 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 1.6766 -1.7489 -1.2494 34 1 1.6766 -0.2073 -2.1393 35 1 3.1299 -0.7208 -1.2496 36 1 1.1075 -4.5456 1.9353 37 1 1.6976 -6.4531 4.8796 38 1 1.8545 -8.8693 3.7501 39 1 0.1750 -8.3030 3.5863 40 1 0.2482 -12.1693 -0.8595 41 1 3.3345 -4.6178 5.5982 42 1 3.9247 -2.2596 5.2156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892725414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:12 Heat of formation + Delta-G solvation = -106.410659 kcal Electronic energy + Delta-G solvation = -25998.476771 eV Core-core repulsion = 22069.298360 eV Total energy + Delta-G solvation = -3929.178411 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.32325 -41.60630 -40.25703 -38.12355 -36.54065 -35.09263 -34.60312 -32.74143 -32.62293 -30.32869 -28.43079 -28.31758 -27.69555 -26.55487 -24.88831 -23.16206 -22.14356 -20.86536 -20.01543 -19.41808 -18.50222 -17.83962 -17.47841 -17.24638 -17.10867 -16.91164 -16.88521 -16.30681 -16.05555 -15.63080 -15.49286 -15.07613 -14.92529 -14.84209 -14.60850 -14.49837 -13.79641 -13.44114 -13.34403 -13.19128 -13.16631 -12.97252 -12.90358 -12.87661 -12.67100 -12.57033 -12.37541 -12.19607 -11.78759 -11.46965 -11.46051 -11.28027 -11.14228 -10.67698 -10.38640 -10.31538 -9.86658 -8.70723 -8.36352 -6.15457 -0.65199 -0.02004 1.15250 1.19905 1.37265 1.42921 1.43745 1.50189 1.54313 1.97508 2.24959 2.69177 2.98381 3.03915 3.21609 3.52518 3.68008 3.73076 3.74830 3.81801 3.87351 3.91261 4.14835 4.23680 4.38179 4.45485 4.51805 4.55880 4.63334 4.71488 4.78296 4.81308 4.85631 4.88370 5.08812 5.13364 5.21407 5.23469 5.38470 5.40523 5.52169 6.16066 6.18198 6.47663 6.80343 6.91941 7.05102 8.72546 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.002366 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.087371 B =11830.657794 C =13233.227467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.101 3.899 3 C -0.131 4.131 4 C -0.183 4.183 5 O -0.330 6.330 6 C 0.522 3.478 7 O -0.514 6.514 8 C 0.087 3.913 9 C -0.134 4.134 10 C 0.179 3.821 11 N -0.649 5.649 12 C 0.534 3.466 13 O -0.536 6.536 14 C -0.127 4.127 15 S -0.154 6.154 16 C -0.545 4.545 17 H 0.088 0.912 18 C 0.012 3.988 19 N -0.913 5.913 20 Si 0.999 3.001 21 H -0.261 1.261 22 H -0.282 1.282 23 H -0.260 1.260 24 C -0.143 4.143 25 C 0.121 3.879 26 N -0.465 5.465 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.125 0.875 37 H 0.439 0.561 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.271 0.729 41 H 0.197 0.803 42 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.854 23.299 13.190 27.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.065 3.935 3 C -0.188 4.188 4 C -0.240 4.240 5 O -0.246 6.246 6 C 0.365 3.635 7 O -0.403 6.403 8 C -0.048 4.048 9 C -0.157 4.157 10 C 0.075 3.925 11 N -0.298 5.298 12 C 0.322 3.678 13 O -0.411 6.411 14 C -0.278 4.278 15 S 0.073 5.927 16 C -0.692 4.692 17 H 0.106 0.894 18 C -0.193 4.193 19 N -0.549 5.549 20 Si 0.821 3.179 21 H -0.186 1.186 22 H -0.207 1.207 23 H -0.184 1.184 24 C -0.165 4.165 25 C -0.040 4.040 26 N -0.178 5.178 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.143 0.857 37 H 0.281 0.719 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.080 0.920 41 H 0.214 0.786 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 5.199 24.595 10.709 27.324 hybrid contribution -1.171 -2.785 1.110 3.219 sum 4.028 21.810 11.819 25.131 Atomic orbital electron populations 1.22469 0.93772 1.03312 1.04205 1.22661 0.94920 0.93799 0.82105 1.21846 1.02427 0.90057 1.04467 1.22489 1.01844 1.01767 0.97913 1.86693 1.69004 1.23155 1.45779 1.20915 0.76861 0.81177 0.84518 1.90808 1.35917 1.70723 1.42809 1.19766 0.99995 0.90573 0.94444 1.21971 1.00571 0.93475 0.99716 1.18058 0.94747 0.84488 0.95176 1.43219 1.68753 1.06757 1.11118 1.20473 0.75916 0.87277 0.84153 1.90778 1.48438 1.76024 1.25816 1.23361 1.06233 0.93887 1.04333 1.85745 1.87358 1.12292 1.07272 1.23170 1.51535 0.97866 0.96673 0.89391 1.26156 0.95008 1.03734 0.94395 1.70183 1.46908 1.35871 1.01943 0.84992 0.79158 0.75922 0.77860 1.18602 1.20699 1.18417 1.22713 0.95544 0.96754 1.01483 1.23528 0.95797 0.91273 0.93367 1.67692 1.08832 1.38792 1.02498 0.91315 0.88575 0.92786 0.91206 0.87868 0.90868 0.92969 0.88489 0.91777 0.85698 0.71913 0.85754 0.86191 0.92024 0.78586 0.76623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.78 8.37 71.98 0.60 -3.18 16 2 C 0.10 2.18 1.13 -10.79 -0.01 2.17 16 3 C -0.13 -1.83 8.85 71.98 0.64 -1.19 16 4 C -0.18 -4.14 8.37 71.98 0.60 -3.53 16 5 O -0.33 -9.16 9.70 -55.87 -0.54 -9.70 16 6 C 0.52 16.91 7.26 70.44 0.51 17.42 16 7 O -0.51 -19.17 11.86 20.06 0.24 -18.93 16 8 C 0.09 2.62 6.74 41.82 0.28 2.91 16 9 C -0.13 -4.26 8.26 22.75 0.19 -4.07 16 10 C 0.18 4.22 6.33 38.45 0.24 4.46 16 11 N -0.65 -14.56 5.35 -303.06 -1.62 -16.18 16 12 C 0.53 18.40 7.62 87.66 0.67 19.07 16 13 O -0.54 -24.24 13.56 -3.01 -0.04 -24.29 16 14 C -0.13 -4.60 6.16 71.24 0.44 -4.16 16 15 S -0.15 -8.31 20.57 -56.49 -1.16 -9.47 16 16 C -0.54 -30.21 9.50 67.95 0.65 -29.56 16 17 H 0.09 4.44 7.80 -2.91 -0.02 4.41 16 18 C 0.01 0.66 5.49 84.86 0.47 1.13 16 19 N -0.91 -55.88 13.22 21.65 0.29 -55.60 16 20 Si 1.00 42.83 29.55 68.60 2.03 44.85 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 23 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 24 C -0.14 -1.96 10.06 22.55 0.23 -1.74 16 25 C 0.12 1.78 11.17 84.74 0.95 2.73 16 26 N -0.46 -11.25 10.12 -185.21 -1.87 -13.12 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.49 5.88 -2.39 -0.01 1.47 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 1.55 5.88 -2.39 -0.01 1.54 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.13 4.97 6.05 -2.91 -0.02 4.96 16 37 H 0.44 5.44 8.82 -92.71 -0.82 4.62 16 38 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 39 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 40 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 41 H 0.20 0.76 8.06 -2.91 -0.02 0.74 16 42 H 0.22 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -85.23 372.70 4.00 -81.23 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.24 Total: 18.77 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 6.45 Total: 2.45 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -3.21 Total: -84.90 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: -0.35 Total: -52.92 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Total: -85.23 4.00 -81.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892725414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.180 kcal (2) G-P(sol) polarization free energy of solvation -85.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds