Wall clock time and date at job start Tue Mar 31 2020 20:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53011 * 108.43309 * 2 1 4 4 C 1.50701 * 109.47024 * 61.45901 * 3 2 1 5 5 O 1.21280 * 119.99768 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99493 * 180.02562 * 4 3 2 7 7 C 1.39235 * 119.99411 * 175.70620 * 6 4 3 8 8 C 1.39487 * 119.83389 * 215.00962 * 7 6 4 9 9 C 1.36372 * 120.17242 * 179.72462 * 8 7 6 10 10 C 1.40872 * 119.82211 * 0.52955 * 9 8 7 11 11 C 1.41162 * 120.16120 * 179.76748 * 10 9 8 12 12 H 1.07996 * 119.99965 * 214.76165 * 11 10 9 13 13 C 1.39901 * 119.99582 * 34.76464 * 11 10 9 14 14 N 1.30876 * 120.00877 * 355.56273 * 13 11 10 15 15 Si 1.86807 * 119.99769 * 175.56156 * 13 11 10 16 16 H 1.48502 * 109.46869 * 90.00086 * 15 13 11 17 17 H 1.48498 * 109.47063 * 210.00169 * 15 13 11 18 18 H 1.48500 * 109.46852 * 329.99921 * 15 13 11 19 19 C 1.40867 * 119.67639 * 359.74565 * 10 9 8 20 20 C 1.36368 * 119.82712 * 0.02562 * 19 10 9 21 21 C 1.53195 * 108.64983 * 242.08512 * 2 1 3 22 22 C 1.56276 * 106.31334 * 266.41120 * 21 2 1 23 23 S 1.83899 * 99.37033 * 323.08500 * 22 21 2 24 24 O 1.42093 * 111.46696 * 283.97149 * 23 22 21 25 25 O 1.42107 * 111.46412 * 144.12360 * 23 22 21 26 26 N 1.46449 * 108.64467 * 117.90930 * 2 1 3 27 27 H 1.08994 * 109.46989 * 303.54526 * 1 2 3 28 28 H 1.09008 * 109.46806 * 63.54182 * 1 2 3 29 29 H 1.08991 * 109.46955 * 183.53818 * 1 2 3 30 30 H 1.08995 * 109.46736 * 181.45816 * 3 2 1 31 31 H 1.09002 * 109.46656 * 301.45553 * 3 2 1 32 32 H 0.96996 * 120.00013 * 355.70152 * 6 4 3 33 33 H 1.08002 * 119.90771 * 0.02562 * 8 7 6 34 34 H 1.07997 * 120.09128 * 180.30112 * 9 8 7 35 35 H 0.96992 * 120.00381 * 179.97438 * 14 13 11 36 36 H 1.07997 * 120.08411 * 180.02562 * 19 10 9 37 37 H 1.08007 * 119.91435 * 180.02562 * 20 19 10 38 38 H 1.08996 * 110.10334 * 25.63066 * 21 2 1 39 39 H 1.09004 * 110.10429 * 147.18691 * 21 2 1 40 40 H 1.09002 * 111.64210 * 205.52092 * 22 21 2 41 41 H 1.08999 * 111.34529 * 80.54091 * 22 21 2 42 42 H 0.97000 * 126.08599 * 299.35686 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0138 1.4516 0.0000 4 6 1.5286 2.1428 1.2482 5 8 0.8612 1.5345 2.0577 6 7 1.8356 3.4372 1.4642 7 6 1.3137 4.1010 2.5713 8 6 0.9778 5.4514 2.4761 9 6 0.4609 6.1068 3.5545 10 6 0.2770 5.4192 4.7702 11 6 -0.2528 6.0919 5.8924 12 1 0.0891 5.8385 6.8850 13 6 -1.2209 7.0869 5.7187 14 7 -1.5722 7.4549 4.5129 15 14 -2.0122 7.8902 7.2081 16 1 -1.2189 9.0800 7.6087 17 1 -3.3956 8.3093 6.8678 18 1 -2.0511 6.9199 8.3315 19 6 0.6241 4.0569 4.8603 20 6 1.1355 3.4138 3.7720 21 6 2.0199 -0.6795 -1.2826 22 6 2.2492 -2.1829 -0.9228 23 16 2.9026 -1.9858 0.7848 24 8 4.2526 -1.5423 0.7771 25 8 2.4629 -3.0366 1.6344 26 7 1.9982 -0.6495 1.2262 27 1 -0.3633 0.5679 0.8565 28 1 -0.3633 0.4579 -0.9201 29 1 -0.3633 -1.0256 0.0634 30 1 3.1033 1.4714 -0.0262 31 1 1.6199 1.9658 -0.8767 32 1 2.4200 3.9064 0.8484 33 1 1.1229 5.9780 1.5444 34 1 0.1967 7.1512 3.4779 35 1 -2.2436 8.1445 4.3926 36 1 0.4855 3.5233 5.7890 37 1 1.4016 2.3692 3.8394 38 1 1.2653 -0.5926 -2.0643 39 1 2.9548 -0.2268 -1.6129 40 1 2.9864 -2.6454 -1.5792 41 1 1.3120 -2.7395 -0.9278 42 1 1.8167 -0.3567 2.1330 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929405732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:59 Heat of formation + Delta-G solvation = -74.156697 kcal Electronic energy + Delta-G solvation = -27103.911063 eV Core-core repulsion = 23176.131289 eV Total energy + Delta-G solvation = -3927.779774 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.34450 -38.41406 -37.21045 -36.92630 -35.99979 -34.48010 -32.99031 -31.96454 -30.86997 -29.63240 -29.05052 -27.77186 -25.15454 -24.32905 -21.79878 -21.08578 -20.45232 -19.67348 -19.63526 -17.66652 -17.38628 -16.94388 -16.64456 -16.29779 -15.89080 -15.35457 -15.21147 -14.96289 -14.71400 -14.01815 -13.86187 -13.59873 -13.46935 -13.16322 -12.87299 -12.71214 -12.46077 -12.27067 -12.19394 -12.12408 -12.11036 -11.74347 -11.66668 -11.47833 -11.33743 -11.20076 -11.06998 -10.95129 -10.78586 -10.70089 -10.01827 -9.53761 -9.51506 -9.45951 -9.11229 -8.85742 -7.57936 -6.89699 -6.64470 -4.37002 0.07615 2.45955 2.50525 2.98432 3.05882 3.08508 3.12494 3.28966 3.38451 3.57878 3.66341 3.96074 4.01533 4.20795 4.36127 4.65360 4.68860 4.86108 4.94648 5.06048 5.18453 5.25668 5.34121 5.44136 5.54016 5.63080 5.79120 5.96174 6.15535 6.36538 6.46787 6.72843 6.88241 7.04073 7.16387 7.24802 7.27080 7.60943 7.71122 7.83790 8.03613 8.22297 8.28651 8.59371 8.70355 8.90301 8.97028 10.26467 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.026778 B = 0.002425 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.391372 B =11545.185720 C =11888.796214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.159 3.841 3 C -0.148 4.148 4 C 0.505 3.495 5 O -0.527 6.527 6 N -0.650 5.650 7 C 0.001 3.999 8 C -0.121 4.121 9 C -0.142 4.142 10 C 0.100 3.900 11 C -0.460 4.460 12 H 0.076 0.924 13 C 0.069 3.931 14 N -0.812 5.812 15 Si 0.915 3.085 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.263 1.263 19 C -0.206 4.206 20 C -0.084 4.084 21 C -0.117 4.117 22 C -0.593 4.593 23 S 2.564 3.436 24 O -0.957 6.957 25 O -0.963 6.963 26 N -1.076 6.076 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.396 0.604 33 H 0.090 0.910 34 H 0.132 0.868 35 H 0.278 0.722 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.740 -12.017 -15.599 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.069 3.931 3 C -0.190 4.190 4 C 0.292 3.708 5 O -0.405 6.405 6 N -0.292 5.292 7 C -0.091 4.091 8 C -0.141 4.141 9 C -0.162 4.162 10 C 0.098 3.902 11 C -0.491 4.491 12 H 0.094 0.906 13 C -0.145 4.145 14 N -0.439 5.439 15 Si 0.740 3.260 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.187 1.187 19 C -0.226 4.226 20 C -0.104 4.104 21 C -0.156 4.156 22 C -0.723 4.723 23 S 2.658 3.342 24 O -0.946 6.946 25 O -0.953 6.953 26 N -0.847 5.847 27 H 0.116 0.884 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.229 0.771 33 H 0.108 0.892 34 H 0.149 0.851 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.116 0.884 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 5.811 -12.838 -14.636 20.317 hybrid contribution -0.758 1.055 -0.003 1.299 sum 5.053 -11.783 -14.639 19.460 Atomic orbital electron populations 1.22543 0.92910 1.03134 1.04323 1.20225 0.96869 0.92069 0.83981 1.22189 1.03267 0.95619 0.97972 1.20350 0.80399 0.82292 0.87792 1.90554 1.39053 1.64331 1.46576 1.43027 1.48263 1.11257 1.26642 1.17263 1.12290 0.92738 0.86815 1.20311 1.02401 0.93003 0.98353 1.21194 1.01184 1.00724 0.93090 1.17730 0.88714 0.90384 0.93395 1.19509 1.19278 1.15986 0.94352 0.90615 1.25879 0.96385 0.95230 0.97056 1.69756 1.26605 1.25324 1.22233 0.86195 0.78501 0.79661 0.81612 1.19517 1.20302 1.18713 1.20813 1.09363 0.94770 0.97639 1.20384 1.00002 0.98634 0.91385 1.22651 1.05033 0.90453 0.97503 1.30877 1.13701 1.03704 1.24057 1.06522 0.75057 0.74673 0.77932 1.93648 1.34151 1.80653 1.86138 1.93610 1.82141 1.56326 1.63179 1.55122 1.71108 1.45213 1.13229 0.88423 0.92236 0.92398 0.88215 0.87991 0.77089 0.89166 0.85067 0.91147 0.88631 0.87418 0.86879 0.88377 0.84287 0.84068 0.71004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 8.26 37.16 0.31 -1.38 16 2 C 0.16 1.45 0.84 -131.74 -0.11 1.34 16 3 C -0.15 -1.40 4.68 -27.88 -0.13 -1.53 16 4 C 0.50 7.46 7.11 -10.98 -0.08 7.38 16 5 O -0.53 -9.44 9.21 5.56 0.05 -9.39 16 6 N -0.65 -10.32 5.30 -9.74 -0.05 -10.37 16 7 C 0.00 0.02 6.30 -83.57 -0.53 -0.50 16 8 C -0.12 -2.65 9.90 -39.79 -0.39 -3.05 16 9 C -0.14 -3.57 8.62 -39.26 -0.34 -3.91 16 10 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16 11 C -0.46 -12.18 9.03 -37.85 -0.34 -12.53 16 12 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 13 C 0.07 1.74 5.42 -17.34 -0.09 1.65 16 14 N -0.81 -20.87 10.59 55.55 0.59 -20.28 16 15 Si 0.92 18.89 29.56 -169.99 -5.03 13.86 16 16 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 17 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 19 C -0.21 -5.12 9.74 -39.26 -0.38 -5.50 16 20 C -0.08 -1.94 8.61 -39.79 -0.34 -2.28 16 21 C -0.12 -0.63 5.58 -24.87 -0.14 -0.77 16 22 C -0.59 -3.23 7.71 38.92 0.30 -2.93 16 23 S 2.56 26.75 6.45 -107.50 -0.69 26.06 16 24 O -0.96 -12.88 18.14 -57.40 -1.04 -13.92 16 25 O -0.96 -13.72 18.14 -57.40 -1.04 -14.76 16 26 N -1.08 -12.24 5.67 0.60 0.00 -12.23 16 27 H 0.10 1.34 5.47 -51.93 -0.28 1.06 16 28 H 0.06 0.47 7.97 -51.92 -0.41 0.05 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.10 0.81 8.11 -51.93 -0.42 0.39 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.40 4.84 8.82 -40.82 -0.36 4.48 16 33 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.13 3.43 6.13 -52.49 -0.32 3.11 16 35 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 36 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 37 H 0.11 2.40 6.22 -52.48 -0.33 2.08 16 38 H 0.11 0.38 7.66 -51.93 -0.40 -0.01 16 39 H 0.10 0.40 7.81 -51.93 -0.41 -0.01 16 40 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.14 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.44 5.95 7.03 -40.36 -0.28 5.66 16 LS Contribution 351.79 15.07 5.30 5.30 Total: -1.00 -34.69 351.79 -10.07 -44.76 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -5.30 Total: 12.93 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -2.86 Total: -21.96 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.54 Total: -42.88 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -2.03 Total: -38.07 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Atomic # 16 Polarization: 26.75 SS G_CDS: -0.69 Total: 26.06 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.69 -10.07 -44.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929405732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.400 kcal (2) G-P(sol) polarization free energy of solvation -34.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds