Wall clock time and date at job start Tue Mar 31 2020 20:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53011 * 108.43309 * 2 1 4 4 C 1.50701 * 109.47024 * 61.45901 * 3 2 1 5 5 O 1.21280 * 119.99768 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99493 * 180.02562 * 4 3 2 7 7 C 1.39235 * 119.99411 * 175.70620 * 6 4 3 8 8 C 1.39487 * 119.83389 * 215.00962 * 7 6 4 9 9 C 1.36372 * 120.17242 * 179.72462 * 8 7 6 10 10 C 1.40872 * 119.82211 * 0.52955 * 9 8 7 11 11 C 1.41162 * 120.16120 * 179.76748 * 10 9 8 12 12 H 1.07996 * 119.99965 * 214.76165 * 11 10 9 13 13 C 1.39901 * 119.99582 * 34.76464 * 11 10 9 14 14 N 1.30876 * 120.00877 * 355.56273 * 13 11 10 15 15 Si 1.86807 * 119.99769 * 175.56156 * 13 11 10 16 16 H 1.48502 * 109.46869 * 90.00086 * 15 13 11 17 17 H 1.48498 * 109.47063 * 210.00169 * 15 13 11 18 18 H 1.48500 * 109.46852 * 329.99921 * 15 13 11 19 19 C 1.40867 * 119.67639 * 359.74565 * 10 9 8 20 20 C 1.36368 * 119.82712 * 0.02562 * 19 10 9 21 21 C 1.53195 * 108.64983 * 242.08512 * 2 1 3 22 22 C 1.56276 * 106.31334 * 266.41120 * 21 2 1 23 23 S 1.83899 * 99.37033 * 323.08500 * 22 21 2 24 24 O 1.42093 * 111.46696 * 283.97149 * 23 22 21 25 25 O 1.42107 * 111.46412 * 144.12360 * 23 22 21 26 26 N 1.46449 * 108.64467 * 117.90930 * 2 1 3 27 27 H 1.08994 * 109.46989 * 303.54526 * 1 2 3 28 28 H 1.09008 * 109.46806 * 63.54182 * 1 2 3 29 29 H 1.08991 * 109.46955 * 183.53818 * 1 2 3 30 30 H 1.08995 * 109.46736 * 181.45816 * 3 2 1 31 31 H 1.09002 * 109.46656 * 301.45553 * 3 2 1 32 32 H 0.96996 * 120.00013 * 355.70152 * 6 4 3 33 33 H 1.08002 * 119.90771 * 0.02562 * 8 7 6 34 34 H 1.07997 * 120.09128 * 180.30112 * 9 8 7 35 35 H 0.96992 * 120.00381 * 179.97438 * 14 13 11 36 36 H 1.07997 * 120.08411 * 180.02562 * 19 10 9 37 37 H 1.08007 * 119.91435 * 180.02562 * 20 19 10 38 38 H 1.08996 * 110.10334 * 25.63066 * 21 2 1 39 39 H 1.09004 * 110.10429 * 147.18691 * 21 2 1 40 40 H 1.09002 * 111.64210 * 205.52092 * 22 21 2 41 41 H 1.08999 * 111.34529 * 80.54091 * 22 21 2 42 42 H 0.97000 * 126.08599 * 299.35686 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0138 1.4516 0.0000 4 6 1.5286 2.1428 1.2482 5 8 0.8612 1.5345 2.0577 6 7 1.8356 3.4372 1.4642 7 6 1.3137 4.1010 2.5713 8 6 0.9778 5.4514 2.4761 9 6 0.4609 6.1068 3.5545 10 6 0.2770 5.4192 4.7702 11 6 -0.2528 6.0919 5.8924 12 1 0.0891 5.8385 6.8850 13 6 -1.2209 7.0869 5.7187 14 7 -1.5722 7.4549 4.5129 15 14 -2.0122 7.8902 7.2081 16 1 -1.2189 9.0800 7.6087 17 1 -3.3956 8.3093 6.8678 18 1 -2.0511 6.9199 8.3315 19 6 0.6241 4.0569 4.8603 20 6 1.1355 3.4138 3.7720 21 6 2.0199 -0.6795 -1.2826 22 6 2.2492 -2.1829 -0.9228 23 16 2.9026 -1.9858 0.7848 24 8 4.2526 -1.5423 0.7771 25 8 2.4629 -3.0366 1.6344 26 7 1.9982 -0.6495 1.2262 27 1 -0.3633 0.5679 0.8565 28 1 -0.3633 0.4579 -0.9201 29 1 -0.3633 -1.0256 0.0634 30 1 3.1033 1.4714 -0.0262 31 1 1.6199 1.9658 -0.8767 32 1 2.4200 3.9064 0.8484 33 1 1.1229 5.9780 1.5444 34 1 0.1967 7.1512 3.4779 35 1 -2.2436 8.1445 4.3926 36 1 0.4855 3.5233 5.7890 37 1 1.4016 2.3692 3.8394 38 1 1.2653 -0.5926 -2.0643 39 1 2.9548 -0.2268 -1.6129 40 1 2.9864 -2.6454 -1.5792 41 1 1.3120 -2.7395 -0.9278 42 1 1.8167 -0.3567 2.1330 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929405732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:58 Heat of formation + Delta-G solvation = -101.372438 kcal Electronic energy + Delta-G solvation = -27105.091226 eV Core-core repulsion = 23176.131289 eV Total energy + Delta-G solvation = -3928.959937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.49128 -39.67399 -38.41864 -37.99170 -36.89463 -36.07066 -34.69045 -32.56811 -31.85153 -31.44828 -30.60787 -28.78488 -26.66528 -25.15459 -23.41149 -22.66969 -21.51065 -20.92338 -20.45045 -19.26802 -18.51081 -18.24112 -17.63262 -17.37373 -17.01214 -16.71368 -16.40068 -15.93464 -15.71696 -15.43755 -15.17390 -14.70209 -14.48637 -14.16702 -14.07671 -13.94069 -13.64877 -13.55018 -13.34472 -13.19626 -13.14407 -13.04972 -12.98807 -12.80702 -12.60692 -12.49758 -12.39631 -12.07035 -11.81313 -11.69996 -11.39677 -11.37818 -11.17885 -10.70256 -10.32992 -10.31711 -9.45366 -8.69859 -8.50471 -6.33079 -0.63975 0.81953 1.14660 1.38307 1.44421 1.52271 1.72020 1.89741 2.23213 2.40687 2.74255 2.80881 3.07731 3.40310 3.58057 3.67199 3.72295 4.00380 4.09552 4.31476 4.40411 4.51430 4.59281 4.64116 4.73773 4.77584 4.91365 4.94192 4.97928 5.09403 5.14921 5.16956 5.30970 5.37004 5.45363 5.66050 5.70908 5.93295 6.04198 6.14855 6.27317 6.40872 6.68387 6.80885 6.96917 7.01389 7.50750 8.41820 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.026778 B = 0.002425 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.391372 B =11545.185720 C =11888.796214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.149 3.851 3 C -0.140 4.140 4 C 0.497 3.503 5 O -0.560 6.560 6 N -0.649 5.649 7 C 0.026 3.974 8 C -0.120 4.120 9 C -0.159 4.159 10 C 0.066 3.934 11 C -0.501 4.501 12 H 0.069 0.931 13 C 0.028 3.972 14 N -0.841 5.841 15 Si 0.987 3.013 16 H -0.259 1.259 17 H -0.268 1.268 18 H -0.265 1.265 19 C -0.223 4.223 20 C -0.098 4.098 21 C -0.114 4.114 22 C -0.547 4.547 23 S 2.545 3.455 24 O -0.998 6.998 25 O -1.017 7.017 26 N -1.090 6.090 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.120 0.880 31 H 0.144 0.856 32 H 0.417 0.583 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.284 0.716 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.150 0.850 39 H 0.122 0.878 40 H 0.177 0.823 41 H 0.162 0.838 42 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.922 -12.500 -19.765 24.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.059 3.941 3 C -0.181 4.181 4 C 0.287 3.713 5 O -0.439 6.439 6 N -0.294 5.294 7 C -0.067 4.067 8 C -0.140 4.140 9 C -0.180 4.180 10 C 0.063 3.937 11 C -0.531 4.531 12 H 0.087 0.913 13 C -0.183 4.183 14 N -0.469 5.469 15 Si 0.808 3.192 16 H -0.184 1.184 17 H -0.193 1.193 18 H -0.189 1.189 19 C -0.243 4.243 20 C -0.118 4.118 21 C -0.153 4.153 22 C -0.683 4.683 23 S 2.646 3.354 24 O -0.987 6.987 25 O -1.007 7.007 26 N -0.857 5.857 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.161 0.839 32 H 0.254 0.746 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.168 0.832 39 H 0.140 0.860 40 H 0.194 0.806 41 H 0.180 0.820 42 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 6.049 -13.336 -18.810 23.838 hybrid contribution -0.787 1.052 1.101 1.714 sum 5.262 -12.284 -17.709 22.186 Atomic orbital electron populations 1.22513 0.93741 1.03017 1.03643 1.20610 0.96384 0.92340 0.84755 1.22310 1.04477 0.95432 0.95913 1.21478 0.79253 0.81426 0.89129 1.90575 1.40215 1.64911 1.48212 1.43036 1.48859 1.11933 1.25575 1.17316 1.09281 0.92497 0.87640 1.20578 1.01178 0.93499 0.98770 1.21174 1.02489 1.00388 0.93907 1.18018 0.90124 0.91121 0.94393 1.19705 1.21218 1.18006 0.94216 0.91295 1.26698 0.96260 0.95272 1.00103 1.69815 1.27224 1.25940 1.23925 0.85133 0.77816 0.78629 0.77653 1.18401 1.19269 1.18915 1.20923 1.10302 0.94735 0.98327 1.20519 1.00473 0.98835 0.91935 1.22845 1.07390 0.89276 0.95749 1.30694 1.15010 1.04991 1.17586 1.06875 0.74422 0.73642 0.80468 1.93588 1.36473 1.80914 1.87728 1.93537 1.82522 1.57680 1.66930 1.55201 1.71034 1.45973 1.13496 0.92899 0.89466 0.91833 0.86194 0.83868 0.74567 0.85668 0.86461 0.90497 0.89136 0.87220 0.83175 0.85968 0.80572 0.82030 0.72767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 8.26 71.98 0.59 -2.30 16 2 C 0.15 2.18 0.84 3.68 0.00 2.19 16 3 C -0.14 -2.06 4.68 29.85 0.14 -1.92 16 4 C 0.50 13.82 7.11 87.66 0.62 14.44 16 5 O -0.56 -20.18 9.21 -3.03 -0.03 -20.20 16 6 N -0.65 -19.24 5.30 -303.11 -1.61 -20.85 16 7 C 0.03 1.10 6.30 38.57 0.24 1.35 16 8 C -0.12 -5.24 9.90 22.14 0.22 -5.02 16 9 C -0.16 -8.28 8.62 22.48 0.19 -8.09 16 10 C 0.07 3.65 5.55 -21.27 -0.12 3.53 16 11 C -0.50 -27.93 9.03 23.39 0.21 -27.72 16 12 H 0.07 3.75 7.85 -2.91 -0.02 3.73 16 13 C 0.03 1.47 5.42 85.24 0.46 1.93 16 14 N -0.84 -44.48 10.59 21.82 0.23 -44.25 16 15 Si 0.99 39.63 29.56 68.60 2.03 41.66 16 16 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 17 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 18 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 19 C -0.22 -11.70 9.74 22.48 0.22 -11.48 16 20 C -0.10 -4.63 8.61 22.13 0.19 -4.44 16 21 C -0.11 -0.51 5.58 31.80 0.18 -0.33 16 22 C -0.55 -3.12 7.71 73.12 0.56 -2.56 16 23 S 2.55 50.70 6.45 -56.49 -0.36 50.34 16 24 O -1.00 -26.38 18.14 -127.79 -2.32 -28.70 16 25 O -1.02 -29.94 18.14 -127.79 -2.32 -32.26 16 26 N -1.09 -24.00 5.67 -152.02 -0.86 -24.87 16 27 H 0.05 1.42 5.47 -2.39 -0.01 1.41 16 28 H 0.09 0.96 7.97 -2.38 -0.02 0.94 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.12 1.38 8.11 -2.39 -0.02 1.36 16 31 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.42 8.79 8.82 -92.71 -0.82 7.97 16 33 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 34 H 0.12 6.36 6.13 -2.91 -0.02 6.34 16 35 H 0.28 13.64 8.30 -92.71 -0.77 12.87 16 36 H 0.09 4.65 8.06 -2.91 -0.02 4.62 16 37 H 0.11 5.10 6.22 -2.91 -0.02 5.08 16 38 H 0.15 -0.23 7.66 -2.39 -0.02 -0.24 16 39 H 0.12 0.10 7.81 -2.38 -0.02 0.09 16 40 H 0.18 -0.09 8.14 -2.39 -0.02 -0.10 16 41 H 0.16 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.43 12.09 7.03 -93.00 -0.65 11.44 16 Total: -1.00 -83.91 351.79 -1.91 -85.81 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: -0.39 Total: 33.74 kcal Atomic # 6 Polarization: -44.14 SS G_CDS: 3.72 Total: -40.42 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -2.24 Total: -89.97 kcal Atomic # 8 Polarization: -76.50 SS G_CDS: -4.66 Total: -81.16 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Atomic # 16 Polarization: 50.70 SS G_CDS: -0.36 Total: 50.34 kcal Total: -83.91 -1.91 -85.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929405732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.558 kcal (2) G-P(sol) polarization free energy of solvation -83.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds