Wall clock time and date at job start Tue Mar 31 2020 21:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 N 1.46889 * 109.47325 * 124.99884 * 3 2 1 5 5 C 1.46901 * 111.00165 * 179.97438 * 4 3 2 6 6 H 1.09010 * 110.30417 * 32.82079 * 5 4 3 7 7 C 1.54393 * 110.34225 * 270.54026 * 5 4 3 8 8 N 1.48151 * 104.61337 * 264.98788 * 7 5 4 9 9 C 1.34775 * 127.83126 * 140.41530 * 8 7 5 10 10 O 1.21281 * 120.00168 * 359.97319 * 9 8 7 11 11 C 1.50701 * 119.99479 * 179.97438 * 9 8 7 12 12 S 1.81006 * 109.46958 * 180.02562 * 11 9 8 13 13 C 1.76202 * 99.99839 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00159 * 359.97438 * 13 12 11 15 15 C 1.38796 * 119.99799 * 179.97438 * 13 12 11 16 16 N 1.31629 * 120.00009 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 120.00262 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47028 * 89.99484 * 17 15 13 19 19 H 1.48492 * 109.47504 * 209.99979 * 17 15 13 20 20 H 1.48497 * 109.46798 * 330.00245 * 17 15 13 21 21 C 1.48140 * 104.32515 * 320.41453 * 8 7 5 22 22 C 1.54277 * 110.34675 * 154.99820 * 5 4 3 23 23 H 1.08994 * 110.34599 * 359.89367 * 22 5 4 24 24 C 1.53002 * 110.34446 * 237.74237 * 22 5 4 25 25 F 1.39908 * 109.47091 * 60.00259 * 24 22 5 26 26 F 1.39899 * 109.47560 * 180.02562 * 24 22 5 27 27 F 1.39899 * 109.47404 * 300.00048 * 24 22 5 28 28 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 30 30 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.46714 * 244.99836 * 3 2 1 32 32 H 1.09000 * 109.46958 * 4.99415 * 3 2 1 33 33 H 1.00901 * 111.00542 * 56.04563 * 4 3 2 34 34 H 1.08997 * 110.40832 * 23.77284 * 7 5 4 35 35 H 1.09001 * 110.40356 * 146.21024 * 7 5 4 36 36 H 1.09004 * 109.47026 * 299.99337 * 11 9 8 37 37 H 1.08993 * 109.47536 * 59.99471 * 11 9 8 38 38 H 0.97008 * 120.00182 * 179.97438 * 16 15 13 39 39 H 1.08990 * 110.41202 * 280.79662 * 21 8 7 40 40 H 1.09005 * 110.40938 * 158.36595 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1344 5 6 3.7505 2.5922 1.1662 6 1 3.1366 3.4100 0.7885 7 6 5.0461 2.4633 0.3365 8 7 6.0888 2.1028 1.3253 9 6 7.1008 1.2251 1.1766 10 8 7.2324 0.6224 0.1325 11 6 8.0688 0.9928 2.3080 12 16 9.3036 -0.2309 1.8038 13 6 10.2765 -0.3062 3.2710 14 1 10.0181 0.3060 4.1223 15 6 11.3750 -1.1524 3.3325 16 7 12.1021 -1.2083 4.4283 17 14 11.8216 -2.2120 1.8602 18 1 12.7573 -1.4671 0.9799 19 1 12.4719 -3.4619 2.3289 20 1 10.5904 -2.5489 1.1013 21 6 5.7667 2.9257 2.5142 22 6 4.2256 2.8970 2.6020 23 1 3.8978 2.1127 3.2841 24 6 3.6937 4.2562 3.0610 25 9 2.2949 4.2420 3.0366 26 9 4.1352 4.5143 4.3631 27 9 4.1649 5.2555 2.2027 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5400 0.9354 0.0044 30 1 1.8500 -0.9353 0.0004 31 1 2.6213 1.4025 -0.9314 32 1 1.3586 2.1317 0.0895 33 1 3.6193 0.5387 1.1093 34 1 4.9424 1.6765 -0.4106 35 1 5.2875 3.4129 -0.1412 36 1 8.5672 1.9294 2.5579 37 1 7.5275 0.6254 3.1798 38 1 12.8697 -1.8000 4.4715 39 1 6.1207 3.9473 2.3766 40 1 6.2066 2.4876 3.4102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112052879.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:26 Heat of formation + Delta-G solvation = -179.294954 kcal Electronic energy + Delta-G solvation = -27398.927671 eV Core-core repulsion = 22924.732020 eV Total energy + Delta-G solvation = -4474.195651 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.11472 -48.59110 -48.57450 -41.32453 -39.25703 -36.89010 -34.67668 -34.14695 -32.62678 -31.37493 -28.94555 -27.85415 -26.79657 -25.92245 -23.89949 -21.97023 -21.04621 -20.76200 -19.74029 -19.49529 -19.17509 -18.73969 -18.13145 -17.16892 -16.94522 -16.71262 -16.34758 -16.21681 -16.10183 -15.71754 -15.48031 -15.39841 -15.01638 -14.92240 -14.89073 -14.75107 -14.70559 -14.48007 -14.03815 -13.68088 -13.55254 -13.46973 -13.33325 -13.16693 -13.02006 -12.82068 -12.67435 -12.59993 -12.24636 -11.88011 -11.85510 -11.17530 -11.13356 -10.55187 -10.52688 -10.10053 -9.43743 -9.01047 -8.51714 -6.22969 0.92471 1.31291 1.34267 1.39591 1.42121 1.49754 1.66308 1.96985 2.24297 2.62782 2.67303 2.77202 2.84761 2.86788 3.24667 3.43684 3.56334 3.68539 3.80665 3.94572 4.05391 4.13932 4.17925 4.28578 4.35926 4.44216 4.48109 4.52579 4.65281 4.70474 4.76324 4.97699 5.03495 5.70642 5.72314 5.79542 5.91161 6.11759 6.13925 6.21480 6.93140 6.94553 8.60655 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.012805 B = 0.003072 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.066422 B = 9111.414869 C =10556.241910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.168 4.168 3 C 0.085 3.915 4 N -0.677 5.677 5 C 0.092 3.908 6 H 0.120 0.880 7 C 0.077 3.923 8 N -0.615 5.615 9 C 0.561 3.439 10 O -0.555 6.555 11 C -0.107 4.107 12 S -0.172 6.172 13 C -0.527 4.527 14 H 0.064 0.936 15 C 0.046 3.954 16 N -0.917 5.917 17 Si 0.913 3.087 18 H -0.263 1.263 19 H -0.260 1.260 20 H -0.236 1.236 21 C 0.101 3.899 22 C -0.138 4.138 23 H 0.145 0.855 24 C 0.469 3.531 25 F -0.180 7.180 26 F -0.183 7.183 27 F -0.181 7.181 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.346 0.654 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.277 0.723 39 H 0.100 0.900 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.506 11.523 -6.328 27.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.187 4.187 3 C -0.043 4.043 4 N -0.307 5.307 5 C -0.020 4.020 6 H 0.138 0.862 7 C -0.047 4.047 8 N -0.349 5.349 9 C 0.350 3.650 10 O -0.433 6.433 11 C -0.258 4.258 12 S 0.054 5.946 13 C -0.675 4.675 14 H 0.082 0.918 15 C -0.159 4.159 16 N -0.555 5.555 17 Si 0.735 3.265 18 H -0.188 1.188 19 H -0.184 1.184 20 H -0.160 1.160 21 C -0.022 4.022 22 C -0.159 4.159 23 H 0.162 0.838 24 C 0.415 3.585 25 F -0.161 7.161 26 F -0.165 7.165 27 F -0.163 7.163 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.165 0.835 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -24.566 10.730 -7.325 27.789 hybrid contribution 1.094 0.223 0.547 1.244 sum -23.471 10.953 -6.778 26.773 Atomic orbital electron populations 1.23987 0.95596 1.02748 0.99021 1.22857 0.96523 0.97945 1.01332 1.21178 0.94853 0.96724 0.91536 1.60594 1.21601 1.03446 1.45031 1.22424 0.93024 0.95032 0.91552 0.86242 1.23249 0.86685 1.02379 0.92380 1.48672 1.28102 1.41122 1.17053 1.19543 0.80111 0.77543 0.87820 1.90713 1.73323 1.49022 1.30194 1.23240 0.98381 1.03641 1.00488 1.84712 1.32615 1.54153 1.23073 1.22439 1.15373 1.29697 0.99998 0.91827 1.25550 0.94729 0.97036 0.98626 1.70015 1.18143 1.38814 1.28520 0.85886 0.81040 0.79551 0.80017 1.18760 1.18406 1.15958 1.22587 0.92110 0.97598 0.89931 1.23437 0.97026 0.93933 1.01477 0.83762 1.20185 0.75725 0.87598 0.75035 1.93210 1.29882 1.96844 1.96198 1.93215 1.89246 1.95142 1.38887 1.93192 1.88221 1.64610 1.70269 0.87694 0.87603 0.87822 0.93600 0.89337 0.83469 0.90226 0.88538 0.86986 0.86688 0.91360 0.88154 0.87357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 14.32 67.79 0.97 -1.16 16 2 C -0.17 -2.36 9.78 25.65 0.25 -2.11 16 3 C 0.08 1.09 5.98 85.56 0.51 1.61 16 4 N -0.68 -9.89 6.16 -490.90 -3.02 -12.92 16 5 C 0.09 1.20 2.68 45.82 0.12 1.33 16 6 H 0.12 1.27 7.08 -2.38 -0.02 1.25 16 7 C 0.08 1.32 6.49 86.53 0.56 1.88 16 8 N -0.61 -13.67 3.32 -807.95 -2.68 -16.35 16 9 C 0.56 18.30 7.93 87.66 0.70 18.99 16 10 O -0.55 -22.54 16.13 -3.03 -0.05 -22.59 16 11 C -0.11 -3.85 5.14 71.24 0.37 -3.48 16 12 S -0.17 -8.45 18.55 -56.49 -1.05 -9.50 16 13 C -0.53 -30.07 10.04 67.95 0.68 -29.38 16 14 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 15 C 0.05 2.66 5.50 84.86 0.47 3.13 16 16 N -0.92 -55.26 13.97 21.65 0.30 -54.96 16 17 Si 0.91 44.30 27.74 68.60 1.90 46.20 16 18 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 20 H -0.24 -11.36 6.74 99.48 0.67 -10.69 16 21 C 0.10 1.60 6.25 86.54 0.54 2.14 16 22 C -0.14 -1.85 2.87 -9.89 -0.03 -1.87 16 23 H 0.14 1.89 7.95 -2.39 -0.02 1.87 16 24 C 0.47 6.71 2.53 71.98 0.18 6.89 16 25 F -0.18 -2.85 16.92 44.97 0.76 -2.09 16 26 F -0.18 -3.03 17.17 44.97 0.77 -2.26 16 27 F -0.18 -2.66 16.05 44.97 0.72 -1.94 16 28 H 0.10 1.12 8.06 -2.91 -0.02 1.09 16 29 H 0.11 1.07 7.84 -2.91 -0.02 1.05 16 30 H 0.10 1.56 8.06 -2.91 -0.02 1.54 16 31 H 0.05 0.58 8.12 -2.39 -0.02 0.56 16 32 H 0.09 0.98 7.72 -2.39 -0.02 0.96 16 33 H 0.35 5.99 8.41 -89.69 -0.75 5.24 16 34 H 0.08 1.60 7.73 -2.39 -0.02 1.58 16 35 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 37 H 0.11 3.78 7.95 -2.40 -0.02 3.76 16 38 H 0.28 15.44 8.31 -92.70 -0.77 14.67 16 39 H 0.10 1.39 7.21 -2.39 -0.02 1.37 16 40 H 0.11 1.65 7.30 -2.38 -0.02 1.63 16 Total: -1.00 -69.83 362.50 3.26 -66.57 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.28 Total: 11.87 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 5.32 Total: -2.04 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -5.40 Total: -84.22 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 9 Polarization: -8.54 SS G_CDS: 2.25 Total: -6.29 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.90 Total: 46.20 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.05 Total: -9.50 kcal Total: -69.83 3.26 -66.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112052879.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.725 kcal (2) G-P(sol) polarization free energy of solvation -69.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds