Wall clock time and date at job start Tue Mar 31 2020 21:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46953 * 2 1 4 4 N 1.46501 * 109.46659 * 180.02562 * 3 2 1 5 5 C 1.46500 * 119.99924 * 274.99398 * 4 3 2 6 6 C 1.50698 * 109.47621 * 275.00273 * 5 4 3 7 7 H 1.08005 * 119.99583 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00185 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99914 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99951 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47193 * 0.02562 * 10 8 6 12 12 H 1.48490 * 109.47179 * 120.00161 * 10 8 6 13 13 H 1.48506 * 109.46905 * 240.00280 * 10 8 6 14 14 S 1.65602 * 120.00016 * 95.00019 * 4 3 2 15 15 O 1.42089 * 106.40516 * 336.45750 * 14 4 3 16 16 O 1.42101 * 106.40038 * 203.53662 * 14 4 3 17 17 C 1.76207 * 107.21788 * 89.99940 * 14 4 3 18 18 C 1.38295 * 120.08311 * 270.01996 * 17 14 4 19 19 C 1.38688 * 120.46081 * 180.09063 * 18 17 14 20 20 C 1.39367 * 119.92032 * 359.82628 * 19 18 17 21 21 C 1.39207 * 118.90893 * 0.12415 * 20 19 18 22 22 C 1.37676 * 120.96452 * 359.97438 * 21 20 19 23 23 C 1.51138 * 106.18064 * 179.97438 * 21 20 19 24 24 C 1.51392 * 104.19000 * 0.11132 * 23 21 20 25 25 O 1.21286 * 126.44458 * 179.97438 * 24 23 21 26 26 N 1.34377 * 107.11317 * 359.93165 * 24 23 21 27 27 H 1.09000 * 109.47178 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47048 * 300.00748 * 1 2 3 29 29 H 1.09005 * 109.46749 * 59.99806 * 1 2 3 30 30 H 1.09004 * 109.46922 * 240.00012 * 2 1 3 31 31 H 1.09001 * 109.46989 * 119.99757 * 2 1 3 32 32 H 1.08998 * 109.47351 * 59.99790 * 3 2 1 33 33 H 1.09001 * 109.47074 * 299.99705 * 3 2 1 34 34 H 1.09007 * 109.46818 * 35.00527 * 5 4 3 35 35 H 1.08998 * 109.47249 * 155.00114 * 5 4 3 36 36 H 0.96998 * 119.99345 * 180.02562 * 9 8 6 37 37 H 1.08000 * 119.81960 * 0.02562 * 18 17 14 38 38 H 1.08002 * 120.14045 * 180.02562 * 19 18 17 39 39 H 1.08004 * 120.04155 * 179.97438 * 22 21 20 40 40 H 1.09002 * 110.51071 * 241.39584 * 23 21 20 41 41 H 1.09004 * 110.51137 * 118.82658 * 23 21 20 42 42 H 0.96996 * 123.87332 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2381 1.3317 1.2630 6 6 4.3823 2.6983 1.8815 7 1 3.9689 3.5629 1.3834 8 6 5.0411 2.8449 3.0838 9 7 5.5441 1.7920 3.6906 10 14 5.2193 4.5388 3.8508 11 1 4.5706 5.5488 2.9766 12 1 4.5683 4.5488 5.1854 13 1 6.6602 4.8653 4.0005 14 16 4.3325 1.5676 -1.4296 15 8 3.4505 1.1102 -2.4454 16 8 5.6155 1.0010 -1.2013 17 6 4.5932 3.2837 -1.7328 18 6 3.6590 4.0112 -2.4473 19 6 3.8572 5.3618 -2.6921 20 6 5.0029 5.9943 -2.2130 21 6 5.9331 5.2482 -1.4947 22 6 5.7330 3.9071 -1.2559 23 6 7.0424 6.2044 -1.1215 24 6 6.6049 7.5285 -1.7109 25 8 7.2064 8.5797 -1.6465 26 7 5.4252 7.3199 -2.3196 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.6909 0.6803 1.9445 35 1 5.2262 0.9122 1.0743 36 1 6.0072 1.8952 4.5366 37 1 2.7691 3.5247 -2.8186 38 1 3.1240 5.9251 -3.2503 39 1 6.4647 3.3423 -0.6972 40 1 7.9869 5.8841 -1.5614 41 1 7.1331 6.2800 -0.0379 42 1 4.9249 8.0113 -2.7805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186913130.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:08 Heat of formation + Delta-G solvation = -81.044860 kcal Electronic energy + Delta-G solvation = -27882.647802 eV Core-core repulsion = 23954.569335 eV Total energy + Delta-G solvation = -3928.078467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.51961 -38.49792 -36.78908 -36.37616 -35.82368 -35.27652 -33.20206 -32.39184 -31.83631 -29.90192 -28.14023 -27.44953 -25.06963 -23.20339 -22.51426 -22.08052 -21.31864 -21.02050 -18.51576 -18.09422 -17.26755 -16.86707 -16.72077 -16.31801 -16.16478 -15.67502 -14.93823 -14.51907 -14.44397 -14.24323 -14.09383 -13.65513 -13.45872 -13.27528 -13.16038 -13.10197 -12.68356 -12.54634 -12.23046 -11.80415 -11.68491 -11.56509 -11.36709 -11.18693 -11.17572 -11.15698 -11.03287 -10.85265 -10.73225 -10.51966 -10.34317 -10.30363 -9.99935 -9.78337 -8.92315 -8.55723 -8.42655 -8.07529 -6.16541 -4.22925 0.68727 1.07116 1.27773 2.20894 2.73856 3.18900 3.28744 3.29763 3.37974 3.71489 3.96484 4.26944 4.30632 4.31818 4.70328 4.83393 4.98003 5.17774 5.26183 5.28063 5.31287 5.32990 5.38642 5.56368 5.62377 5.67523 5.84479 5.88362 6.01177 6.09840 6.14464 6.18160 6.21519 6.32977 6.41407 6.52425 6.66755 6.67628 6.82602 7.28945 7.37491 7.57501 7.71209 7.80753 8.09420 8.82726 9.43636 10.91402 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009379 B = 0.005475 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2984.578280 B = 5113.149371 C = 6969.580165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.133 3.867 4 N -0.980 5.980 5 C 0.243 3.757 6 C -0.540 4.540 7 H 0.063 0.937 8 C 0.067 3.933 9 N -0.887 5.887 10 Si 0.886 3.114 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.281 1.281 14 S 2.692 3.308 15 O -0.976 6.976 16 O -0.957 6.957 17 C -0.683 4.683 18 C 0.011 3.989 19 C -0.164 4.164 20 C 0.184 3.816 21 C -0.164 4.164 22 C 0.056 3.944 23 C -0.116 4.116 24 C 0.532 3.468 25 O -0.505 6.505 26 N -0.660 5.660 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.264 0.736 37 H 0.144 0.856 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 4.197 -10.836 12.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.006 3.994 4 N -0.819 5.819 5 C 0.121 3.879 6 C -0.579 4.579 7 H 0.081 0.919 8 C -0.136 4.136 9 N -0.526 5.526 10 Si 0.714 3.286 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.207 1.207 14 S 2.781 3.219 15 O -0.966 6.966 16 O -0.947 6.947 17 C -0.769 4.769 18 C -0.009 4.009 19 C -0.186 4.186 20 C 0.085 3.915 21 C -0.168 4.168 22 C 0.036 3.964 23 C -0.155 4.155 24 C 0.321 3.679 25 O -0.379 6.379 26 N -0.303 5.303 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.162 0.838 38 H 0.150 0.850 39 H 0.170 0.830 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -4.592 4.073 -11.077 12.664 hybrid contribution -0.286 2.216 0.595 2.312 sum -4.878 6.290 -10.482 13.161 Atomic orbital electron populations 1.21686 0.95806 1.01376 1.01610 1.21988 0.95528 0.98164 1.02808 1.21131 0.79511 0.96303 1.02427 1.57401 1.13844 1.87128 1.23513 1.19281 0.92328 0.97548 0.78754 1.21586 1.36487 0.93749 1.06124 0.91915 1.24906 0.95249 0.96594 0.96857 1.69932 1.36747 1.28821 1.17053 0.86631 0.78045 0.84506 0.79439 1.19758 1.20866 1.20735 1.01916 0.73457 0.73809 0.72767 1.93513 1.66376 1.79378 1.57362 1.93555 1.40423 1.75417 1.85298 1.31246 1.03648 1.28379 1.13616 1.20776 0.96529 0.92445 0.91148 1.20537 0.96862 0.95076 1.06112 1.18436 0.94815 0.83290 0.94937 1.19859 0.97555 0.94741 1.04642 1.20054 0.94285 0.91823 0.90231 1.21091 0.99293 0.90528 1.04631 1.20720 0.79803 0.90480 0.76936 1.90811 1.57993 1.30151 1.58950 1.43842 1.22812 1.09653 1.53961 0.92946 0.92672 0.92853 0.91709 0.91210 0.89971 0.91719 0.93931 0.92816 0.92587 0.83802 0.84978 0.83022 0.85513 0.85285 0.74883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.15 -2.13 6.26 -26.73 -0.17 -2.30 16 3 C 0.13 2.12 5.34 -4.04 -0.02 2.10 16 4 N -0.98 -18.62 2.77 -115.66 -0.32 -18.94 16 5 C 0.24 5.59 5.43 -5.19 -0.03 5.56 16 6 C -0.54 -13.29 9.38 -34.44 -0.32 -13.61 16 7 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 8 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -24.26 13.29 55.43 0.74 -23.53 16 10 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 14 S 2.69 49.48 5.65 -107.50 -0.61 48.87 16 15 O -0.98 -17.90 16.26 -57.18 -0.93 -18.83 16 16 O -0.96 -20.39 15.85 -57.18 -0.91 -21.29 16 17 C -0.68 -11.09 5.98 -39.50 -0.24 -11.33 16 18 C 0.01 0.15 9.53 -39.39 -0.38 -0.23 16 19 C -0.16 -1.93 10.12 -39.00 -0.39 -2.32 16 20 C 0.18 2.34 7.12 -83.58 -0.59 1.74 16 21 C -0.16 -2.35 6.36 -104.25 -0.66 -3.01 16 22 C 0.06 0.91 9.51 -39.73 -0.38 0.53 16 23 C -0.12 -1.44 6.87 -28.48 -0.20 -1.64 16 24 C 0.53 7.05 8.71 -10.82 -0.09 6.95 16 25 O -0.50 -8.08 18.03 5.55 0.10 -7.98 16 26 N -0.66 -7.44 5.88 -9.63 -0.06 -7.49 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 33 H 0.06 0.89 7.61 -51.93 -0.40 0.50 16 34 H 0.04 1.02 8.11 -51.93 -0.42 0.60 16 35 H 0.05 1.35 6.91 -51.93 -0.36 1.00 16 36 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 37 H 0.14 1.65 7.62 -52.49 -0.40 1.25 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.15 2.54 7.63 -52.48 -0.40 2.14 16 40 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 42 H 0.41 3.51 8.96 -40.82 -0.37 3.15 16 LS Contribution 370.69 15.07 5.59 5.59 Total: -1.00 -31.65 370.69 -10.31 -41.96 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.69 Total: 3.92 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -3.20 Total: -17.27 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.36 Total: -49.96 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -1.74 Total: -48.10 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 49.48 SS G_CDS: -0.61 Total: 48.87 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.65 -10.31 -41.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186913130.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.087 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds