Wall clock time and date at job start Tue Mar 31 2020 21:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46953 * 2 1 4 4 N 1.46501 * 109.46659 * 180.02562 * 3 2 1 5 5 C 1.46500 * 119.99924 * 274.99398 * 4 3 2 6 6 C 1.50698 * 109.47621 * 275.00273 * 5 4 3 7 7 H 1.08005 * 119.99583 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00185 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99914 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99951 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47193 * 0.02562 * 10 8 6 12 12 H 1.48490 * 109.47179 * 120.00161 * 10 8 6 13 13 H 1.48506 * 109.46905 * 240.00280 * 10 8 6 14 14 S 1.65602 * 120.00016 * 95.00019 * 4 3 2 15 15 O 1.42089 * 106.40516 * 336.45750 * 14 4 3 16 16 O 1.42101 * 106.40038 * 203.53662 * 14 4 3 17 17 C 1.76207 * 107.21788 * 89.99940 * 14 4 3 18 18 C 1.38295 * 120.08311 * 270.01996 * 17 14 4 19 19 C 1.38688 * 120.46081 * 180.09063 * 18 17 14 20 20 C 1.39367 * 119.92032 * 359.82628 * 19 18 17 21 21 C 1.39207 * 118.90893 * 0.12415 * 20 19 18 22 22 C 1.37676 * 120.96452 * 359.97438 * 21 20 19 23 23 C 1.51138 * 106.18064 * 179.97438 * 21 20 19 24 24 C 1.51392 * 104.19000 * 0.11132 * 23 21 20 25 25 O 1.21286 * 126.44458 * 179.97438 * 24 23 21 26 26 N 1.34377 * 107.11317 * 359.93165 * 24 23 21 27 27 H 1.09000 * 109.47178 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47048 * 300.00748 * 1 2 3 29 29 H 1.09005 * 109.46749 * 59.99806 * 1 2 3 30 30 H 1.09004 * 109.46922 * 240.00012 * 2 1 3 31 31 H 1.09001 * 109.46989 * 119.99757 * 2 1 3 32 32 H 1.08998 * 109.47351 * 59.99790 * 3 2 1 33 33 H 1.09001 * 109.47074 * 299.99705 * 3 2 1 34 34 H 1.09007 * 109.46818 * 35.00527 * 5 4 3 35 35 H 1.08998 * 109.47249 * 155.00114 * 5 4 3 36 36 H 0.96998 * 119.99345 * 180.02562 * 9 8 6 37 37 H 1.08000 * 119.81960 * 0.02562 * 18 17 14 38 38 H 1.08002 * 120.14045 * 180.02562 * 19 18 17 39 39 H 1.08004 * 120.04155 * 179.97438 * 22 21 20 40 40 H 1.09002 * 110.51071 * 241.39584 * 23 21 20 41 41 H 1.09004 * 110.51137 * 118.82658 * 23 21 20 42 42 H 0.96996 * 123.87332 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2381 1.3317 1.2630 6 6 4.3823 2.6983 1.8815 7 1 3.9689 3.5629 1.3834 8 6 5.0411 2.8449 3.0838 9 7 5.5441 1.7920 3.6906 10 14 5.2193 4.5388 3.8508 11 1 4.5706 5.5488 2.9766 12 1 4.5683 4.5488 5.1854 13 1 6.6602 4.8653 4.0005 14 16 4.3325 1.5676 -1.4296 15 8 3.4505 1.1102 -2.4454 16 8 5.6155 1.0010 -1.2013 17 6 4.5932 3.2837 -1.7328 18 6 3.6590 4.0112 -2.4473 19 6 3.8572 5.3618 -2.6921 20 6 5.0029 5.9943 -2.2130 21 6 5.9331 5.2482 -1.4947 22 6 5.7330 3.9071 -1.2559 23 6 7.0424 6.2044 -1.1215 24 6 6.6049 7.5285 -1.7109 25 8 7.2064 8.5797 -1.6465 26 7 5.4252 7.3199 -2.3196 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.6909 0.6803 1.9445 35 1 5.2262 0.9122 1.0743 36 1 6.0072 1.8952 4.5366 37 1 2.7691 3.5247 -2.8186 38 1 3.1240 5.9251 -3.2503 39 1 6.4647 3.3423 -0.6972 40 1 7.9869 5.8841 -1.5614 41 1 7.1331 6.2800 -0.0379 42 1 4.9249 8.0113 -2.7805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186913130.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:08 Heat of formation + Delta-G solvation = -102.373246 kcal Electronic energy + Delta-G solvation = -27883.572670 eV Core-core repulsion = 23954.569335 eV Total energy + Delta-G solvation = -3929.003335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.55868 -39.60307 -38.28810 -37.86782 -36.94537 -36.78404 -34.92778 -33.42093 -33.33338 -30.97850 -29.26178 -29.12134 -26.48848 -24.50217 -24.07548 -23.14315 -22.35047 -22.25199 -19.91454 -19.13494 -18.63626 -18.56230 -18.05062 -17.80358 -17.20269 -17.17111 -16.42757 -15.91534 -15.65827 -15.35815 -15.24742 -15.05641 -14.82226 -14.40325 -14.32709 -14.19613 -14.14940 -13.78031 -13.61402 -13.29469 -13.13022 -13.05280 -12.95330 -12.81593 -12.46094 -12.37962 -12.27665 -12.24686 -12.13861 -11.95556 -11.92079 -11.59008 -11.44191 -11.33416 -10.55655 -9.98561 -9.73262 -9.44106 -8.14334 -6.26371 -0.53871 -0.27441 0.20743 1.15163 1.39760 1.43560 1.52345 1.77312 2.07452 2.41148 2.50059 2.86811 2.94106 3.18207 3.20507 3.51964 3.68318 3.99569 4.02322 4.19321 4.24885 4.31858 4.35510 4.40840 4.55968 4.63019 4.80887 4.83076 4.87640 4.94912 5.00272 5.07596 5.08133 5.27572 5.33590 5.35618 5.38263 5.52959 5.58541 5.60477 5.77618 5.80443 5.98625 6.14485 6.75259 6.86353 7.43406 8.93934 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009379 B = 0.005475 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2984.578280 B = 5113.149371 C = 6969.580165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.147 4.147 3 C 0.124 3.876 4 N -0.986 5.986 5 C 0.258 3.742 6 C -0.534 4.534 7 H 0.069 0.931 8 C 0.017 3.983 9 N -0.926 5.926 10 Si 0.945 3.055 11 H -0.262 1.262 12 H -0.282 1.282 13 H -0.281 1.281 14 S 2.698 3.302 15 O -0.977 6.977 16 O -0.997 6.997 17 C -0.694 4.694 18 C 0.008 3.992 19 C -0.146 4.146 20 C 0.188 3.812 21 C -0.174 4.174 22 C 0.032 3.968 23 C -0.119 4.119 24 C 0.536 3.464 25 O -0.533 6.533 26 N -0.643 5.643 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.025 0.975 35 H 0.023 0.977 36 H 0.265 0.735 37 H 0.168 0.832 38 H 0.178 0.822 39 H 0.132 0.868 40 H 0.146 0.854 41 H 0.131 0.869 42 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.470 6.638 -12.388 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.186 4.186 3 C -0.002 4.002 4 N -0.824 5.824 5 C 0.135 3.865 6 C -0.573 4.573 7 H 0.088 0.912 8 C -0.182 4.182 9 N -0.566 5.566 10 Si 0.771 3.229 11 H -0.186 1.186 12 H -0.208 1.208 13 H -0.207 1.207 14 S 2.791 3.209 15 O -0.967 6.967 16 O -0.988 6.988 17 C -0.784 4.784 18 C -0.011 4.011 19 C -0.167 4.167 20 C 0.089 3.911 21 C -0.178 4.178 22 C 0.012 3.988 23 C -0.158 4.158 24 C 0.325 3.675 25 O -0.410 6.410 26 N -0.287 5.287 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.043 0.957 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.186 0.814 38 H 0.195 0.805 39 H 0.150 0.850 40 H 0.164 0.836 41 H 0.149 0.851 42 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -6.671 6.479 -12.652 15.702 hybrid contribution 0.325 1.475 0.975 1.798 sum -6.346 7.954 -11.676 15.488 Atomic orbital electron populations 1.21658 0.93103 1.02517 1.02639 1.21989 0.97903 0.97112 1.01613 1.21420 0.77641 0.97434 1.03657 1.57292 1.15149 1.87832 1.22095 1.18790 0.91092 0.96536 0.80097 1.21835 1.35380 0.94351 1.05770 0.91234 1.25658 0.95257 0.99724 0.97607 1.70053 1.38084 1.30874 1.17601 0.85700 0.77915 0.80746 0.78559 1.18637 1.20841 1.20671 1.01374 0.72479 0.74661 0.72343 1.93497 1.66128 1.80201 1.56883 1.93501 1.42314 1.77220 1.85731 1.30766 1.05069 1.26699 1.15909 1.21129 0.96487 0.93251 0.90281 1.20953 0.96806 0.94340 1.04636 1.18575 0.94753 0.83530 0.94256 1.19934 0.98739 0.94190 1.04896 1.19948 0.94479 0.92872 0.91543 1.21179 0.99806 0.89854 1.04926 1.20707 0.80039 0.90051 0.76694 1.90807 1.58903 1.31112 1.60193 1.43667 1.22224 1.09501 1.53260 0.91835 0.92096 0.91330 0.92451 0.92948 0.90152 0.88924 0.95696 0.95877 0.92638 0.81433 0.80509 0.85049 0.83618 0.85121 0.72964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.91 71.99 0.71 -2.32 16 2 C -0.15 -4.25 6.26 30.60 0.19 -4.06 16 3 C 0.12 3.85 5.34 86.38 0.46 4.31 16 4 N -0.99 -38.08 2.77 -519.85 -1.44 -39.52 16 5 C 0.26 12.42 5.43 85.63 0.47 12.88 16 6 C -0.53 -26.66 9.38 25.60 0.24 -26.42 16 7 H 0.07 3.32 7.81 -2.91 -0.02 3.29 16 8 C 0.02 0.90 5.46 84.65 0.46 1.36 16 9 N -0.93 -52.16 13.29 21.45 0.28 -51.87 16 10 Si 0.95 41.09 29.54 68.60 2.03 43.11 16 11 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 12 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 14 S 2.70 100.39 5.65 -56.49 -0.32 100.07 16 15 O -0.98 -35.03 16.26 -128.00 -2.08 -37.11 16 16 O -1.00 -44.75 15.85 -128.00 -2.03 -46.78 16 17 C -0.69 -21.91 5.98 22.32 0.13 -21.77 16 18 C 0.01 0.20 9.53 22.39 0.21 0.41 16 19 C -0.15 -2.76 10.12 22.65 0.23 -2.53 16 20 C 0.19 4.15 7.12 38.42 0.27 4.42 16 21 C -0.17 -4.69 6.36 -19.63 -0.12 -4.82 16 22 C 0.03 1.02 9.51 22.17 0.21 1.23 16 23 C -0.12 -2.77 6.87 29.46 0.20 -2.56 16 24 C 0.54 12.97 8.71 87.94 0.77 13.73 16 25 O -0.53 -16.14 18.03 -3.05 -0.05 -16.19 16 26 N -0.64 -12.28 5.88 -302.98 -1.78 -14.06 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 2.52 8.11 -2.39 -0.02 2.50 16 33 H 0.09 2.34 7.61 -2.39 -0.02 2.32 16 34 H 0.02 1.27 8.11 -2.38 -0.02 1.25 16 35 H 0.02 1.25 6.91 -2.39 -0.02 1.23 16 36 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 37 H 0.17 3.14 7.62 -2.91 -0.02 3.11 16 38 H 0.18 1.80 8.06 -2.91 -0.02 1.77 16 39 H 0.13 4.68 7.63 -2.91 -0.02 4.66 16 40 H 0.15 2.79 8.14 -2.39 -0.02 2.77 16 41 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 42 H 0.43 5.56 8.96 -92.71 -0.83 4.73 16 Total: -1.00 -69.75 370.69 -0.73 -70.49 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.22 Total: 18.01 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 4.44 Total: -26.14 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -2.94 Total: -105.45 kcal Atomic # 8 Polarization: -95.92 SS G_CDS: -4.16 Total: -100.09 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 16 Polarization: 100.39 SS G_CDS: -0.32 Total: 100.07 kcal Total: -69.75 -0.73 -70.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186913130.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.887 kcal (2) G-P(sol) polarization free energy of solvation -69.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds