Wall clock time and date at job start Tue Mar 31 2020 21:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.45202 * 109.46867 * 240.00586 * 2 1 3 6 6 C 1.34628 * 117.00407 * 59.99955 * 5 2 1 7 7 O 1.21513 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00286 * 179.97438 * 6 5 2 9 9 C 1.46494 * 120.00166 * 179.97438 * 8 6 5 10 10 H 1.09004 * 110.88784 * 34.30072 * 9 8 6 11 11 C 1.54917 * 111.00453 * 158.17850 * 9 8 6 12 12 N 1.47524 * 104.77957 * 81.08969 * 11 9 8 13 13 S 1.65603 * 125.63502 * 204.08689 * 12 11 9 14 14 O 1.42100 * 106.40147 * 23.55490 * 13 12 11 15 15 O 1.42097 * 106.40219 * 156.47751 * 13 12 11 16 16 C 1.76198 * 107.21566 * 270.01652 * 13 12 11 17 17 H 1.08001 * 120.00286 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99781 * 179.97438 * 16 13 12 19 19 N 1.31503 * 120.00342 * 0.02562 * 18 16 13 20 20 Si 1.86808 * 119.99902 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47226 * 59.99848 * 20 18 16 22 22 H 1.48496 * 109.47213 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47102 * 300.00156 * 20 18 16 24 24 C 1.47027 * 108.71968 * 24.12121 * 12 11 9 25 25 C 1.54325 * 107.26582 * 358.93996 * 24 12 11 26 26 H 1.09005 * 110.71915 * 219.44161 * 25 24 12 27 27 F 1.39907 * 110.71700 * 96.17349 * 25 24 12 28 28 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 31 31 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 32 32 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 34 34 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 35 35 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 37 37 H 0.97000 * 119.99457 * 359.97438 * 8 6 5 38 38 H 1.09001 * 110.36479 * 199.90509 * 11 9 8 39 39 H 1.09000 * 110.36417 * 322.22884 * 11 9 8 40 40 H 0.97001 * 120.00528 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.88373 * 239.53008 * 24 12 11 42 42 H 1.08994 * 110.01316 * 118.42926 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1857 6 6 1.6523 -0.1727 -2.3772 7 8 0.9509 0.8184 -2.4252 8 7 2.0681 -0.7598 -3.5170 9 6 1.6740 -0.2034 -4.8136 10 1 1.6074 0.8836 -4.7660 11 6 2.6501 -0.6515 -5.9300 12 7 2.2047 -2.0093 -6.2966 13 16 3.1479 -3.1791 -6.9926 14 8 4.4924 -2.8601 -6.6612 15 8 2.5432 -4.4247 -6.6732 16 6 3.0080 -2.9912 -8.7389 17 1 2.3840 -2.2114 -9.1499 18 6 3.6950 -3.8399 -9.5808 19 7 4.4544 -4.7898 -9.0804 20 14 3.5472 -3.6404 -11.4323 21 1 4.0187 -2.2877 -11.8236 22 1 4.3781 -4.6685 -12.1089 23 1 2.1279 -3.8059 -11.8362 24 6 0.7848 -2.1517 -5.9428 25 6 0.3370 -0.8217 -5.3009 26 1 -0.3321 -1.0052 -4.4602 27 9 -0.2738 0.0050 -6.2501 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 -1.7490 1.2492 35 1 3.1301 -0.7209 1.2493 36 1 1.6767 -0.2075 2.1392 37 1 2.6282 -1.5508 -3.4787 38 1 2.5772 0.0165 -6.7882 39 1 3.6724 -0.6757 -5.5527 40 1 4.9381 -5.3867 -9.6727 41 1 0.6603 -2.9674 -5.2305 42 1 0.1951 -2.3483 -6.8381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192933425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:41 Heat of formation + Delta-G solvation = -245.228121 kcal Electronic energy + Delta-G solvation = -28692.887082 eV Core-core repulsion = 24326.919870 eV Total energy + Delta-G solvation = -4365.967212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.119 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.73839 -41.89545 -39.69197 -37.86527 -37.47072 -36.19549 -35.49923 -35.19424 -34.54074 -30.54862 -29.86030 -28.31149 -28.26506 -28.25840 -24.28060 -23.58576 -21.91375 -21.14323 -20.80833 -19.47838 -19.33427 -18.42125 -18.22517 -17.46381 -17.17504 -17.09179 -16.62210 -16.35992 -16.03745 -15.89824 -15.62750 -15.32547 -15.04298 -14.96307 -14.45561 -14.16328 -13.99510 -13.77785 -13.37525 -13.29203 -13.28482 -13.19702 -13.01466 -12.87567 -12.83673 -12.69909 -12.56925 -12.51706 -12.33938 -12.32250 -12.29793 -12.22601 -11.92309 -11.36901 -11.25420 -11.14250 -11.04113 -10.39349 -9.94392 -8.77129 -7.50938 0.16751 1.03648 1.33401 1.34948 1.48160 1.65521 2.18792 2.55418 2.72566 2.96823 3.09934 3.22462 3.52071 3.68304 3.78302 3.83991 3.91750 3.98497 4.08213 4.27145 4.31100 4.41166 4.56928 4.63298 4.66618 4.67862 4.78925 4.81450 4.86581 4.90111 4.91926 5.03054 5.11704 5.22953 5.28502 5.33169 5.37807 5.53634 5.60038 5.88433 6.26557 6.76635 7.24036 8.18010 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.023296 B = 0.003052 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.619929 B = 9173.001542 C = 9764.459507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.122 3.878 3 C -0.179 4.179 4 C -0.138 4.138 5 O -0.370 6.370 6 C 0.654 3.346 7 O -0.580 6.580 8 N -0.694 5.694 9 C 0.142 3.858 10 H 0.136 0.864 11 C 0.105 3.895 12 N -1.021 6.021 13 S 2.740 3.260 14 O -1.029 7.029 15 O -1.033 7.033 16 C -1.045 5.045 17 H 0.117 0.883 18 C 0.073 3.927 19 N -0.893 5.893 20 Si 0.986 3.014 21 H -0.250 1.250 22 H -0.263 1.263 23 H -0.252 1.252 24 C 0.091 3.909 25 C 0.084 3.916 26 H 0.123 0.877 27 F -0.199 7.199 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.415 0.585 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.300 0.700 41 H 0.090 0.910 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.503 11.155 15.567 20.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.086 3.914 3 C -0.237 4.237 4 C -0.194 4.194 5 O -0.285 6.285 6 C 0.408 3.592 7 O -0.470 6.470 8 N -0.353 5.353 9 C 0.035 3.965 10 H 0.153 0.847 11 C -0.020 4.020 12 N -0.859 5.859 13 S 2.843 3.157 14 O -1.020 7.020 15 O -1.023 7.023 16 C -1.178 5.178 17 H 0.136 0.864 18 C -0.141 4.141 19 N -0.524 5.524 20 Si 0.805 3.195 21 H -0.174 1.174 22 H -0.187 1.187 23 H -0.176 1.176 24 C -0.035 4.035 25 C 0.044 3.956 26 H 0.140 0.860 27 F -0.180 7.180 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.251 0.749 38 H 0.121 0.879 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.178 10.810 16.096 20.675 hybrid contribution 0.121 -0.322 -1.555 1.592 sum -7.057 10.488 14.542 19.268 Atomic orbital electron populations 1.22481 0.93614 1.02997 1.04585 1.22485 0.94871 0.92735 0.81273 1.22476 1.01582 0.95037 1.04565 1.21900 1.02365 1.01222 0.93962 1.86349 1.71575 1.56690 1.13846 1.18092 0.78443 0.81236 0.81451 1.90907 1.41640 1.27189 1.87282 1.44504 1.55115 1.33293 1.02392 1.22492 0.92922 1.00503 0.80548 0.84690 1.22504 0.99054 0.83217 0.97228 1.58738 1.21295 1.27101 1.78777 0.99444 0.70701 0.70215 0.75389 1.93315 1.37250 1.84670 1.86716 1.93312 1.78506 1.43574 1.86924 1.30990 1.41212 1.27231 1.18397 0.86447 1.25965 0.89615 0.90762 1.07737 1.69955 1.25164 1.16314 1.40962 0.85210 0.80106 0.79898 0.74317 1.17406 1.18679 1.17585 1.22410 0.81585 0.98006 1.01474 1.22910 0.94784 0.87950 0.89913 0.85970 1.92837 1.84205 1.73918 1.67059 0.91548 0.92072 0.88934 0.88921 0.92150 0.91583 0.91417 0.91442 0.87708 0.74916 0.87912 0.88803 0.88998 0.89176 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.06 8.37 71.98 0.60 -2.46 16 2 C 0.12 2.21 1.13 -10.79 -0.01 2.19 16 3 C -0.18 -3.09 8.37 71.98 0.60 -2.48 16 4 C -0.14 -1.72 8.85 71.98 0.64 -1.09 16 5 O -0.37 -8.68 9.94 -55.38 -0.55 -9.23 16 6 C 0.65 16.56 8.06 129.79 1.05 17.61 16 7 O -0.58 -16.09 11.57 19.80 0.23 -15.86 16 8 N -0.69 -16.97 5.21 -563.50 -2.94 -19.90 16 9 C 0.14 3.51 3.17 46.39 0.15 3.66 16 10 H 0.14 3.07 7.63 -2.39 -0.02 3.05 16 11 C 0.11 3.13 6.69 86.84 0.58 3.72 16 12 N -1.02 -38.13 3.70 -506.17 -1.87 -40.00 16 13 S 2.74 141.37 5.22 -56.49 -0.29 141.07 16 14 O -1.03 -58.21 17.34 -128.00 -2.22 -60.43 16 15 O -1.03 -59.24 17.60 -128.00 -2.25 -61.49 16 16 C -1.05 -56.51 9.75 67.73 0.66 -55.85 16 17 H 0.12 5.77 7.81 -2.91 -0.02 5.75 16 18 C 0.07 3.97 5.46 84.66 0.46 4.44 16 19 N -0.89 -52.36 13.19 21.45 0.28 -52.08 16 20 Si 0.99 40.83 29.54 68.60 2.03 42.86 16 21 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 22 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 23 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 24 C 0.09 2.83 6.80 86.73 0.59 3.42 16 25 C 0.08 2.10 4.45 31.78 0.14 2.25 16 26 H 0.12 2.65 8.14 -2.38 -0.02 2.63 16 27 F -0.20 -5.47 17.19 44.97 0.77 -4.70 16 28 H 0.07 1.46 5.88 -2.39 -0.01 1.44 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.47 5.88 -2.39 -0.01 1.45 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.41 10.17 8.75 -92.71 -0.81 9.35 16 38 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.09 2.83 7.79 -2.39 -0.02 2.81 16 40 H 0.30 15.83 8.31 -92.71 -0.77 15.05 16 41 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.08 2.51 8.11 -2.39 -0.02 2.49 16 Total: -1.00 -74.86 364.52 -1.12 -75.98 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.24 Total: 28.39 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 5.46 Total: -24.61 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -4.53 Total: -111.99 kcal Atomic # 8 Polarization: -142.21 SS G_CDS: -4.79 Total: -147.01 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.77 Total: -4.70 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 16 Polarization: 141.37 SS G_CDS: -0.29 Total: 141.07 kcal Total: -74.86 -1.12 -75.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.247 kcal (2) G-P(sol) polarization free energy of solvation -74.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds