Wall clock time and date at job start Tue Mar 31 2020 21:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 O 1.45206 * 109.46989 * 119.99587 * 2 1 3 6 6 C 1.34639 * 116.99892 * 59.99951 * 5 2 1 7 7 O 1.21513 * 119.99857 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99616 * 179.97438 * 6 5 2 9 9 C 1.46507 * 119.99575 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.64168 * 325.69828 * 9 8 6 11 11 C 1.54324 * 110.71621 * 202.56296 * 9 8 6 12 12 N 1.47029 * 107.26690 * 219.44284 * 11 9 8 13 13 S 1.65605 * 125.64663 * 178.90223 * 12 11 9 14 14 O 1.42100 * 106.39928 * 203.53805 * 13 12 11 15 15 O 1.42096 * 106.40166 * 336.46185 * 13 12 11 16 16 C 1.76202 * 107.21462 * 90.00334 * 13 12 11 17 17 H 1.07998 * 120.00017 * 0.02562 * 16 13 12 18 18 C 1.37871 * 119.99903 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00225 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 120.00002 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47454 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46954 * 120.00145 * 20 18 16 23 23 H 1.48496 * 109.47337 * 239.99915 * 20 18 16 24 24 C 1.47420 * 108.70486 * 358.94514 * 12 11 9 25 25 C 1.55126 * 104.94262 * 23.99755 * 24 12 11 26 26 H 1.09004 * 111.16237 * 205.13093 * 25 24 12 27 27 F 1.39901 * 110.93412 * 81.22256 * 25 24 12 28 28 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 29 29 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 30 30 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 33 33 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 34 34 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 35 35 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 36 36 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 37 37 H 0.96996 * 120.00663 * 0.02562 * 8 6 5 38 38 H 1.08999 * 109.88313 * 338.85592 * 11 9 8 39 39 H 1.08997 * 109.88693 * 100.03106 * 11 9 8 40 40 H 0.96999 * 120.00904 * 180.02562 * 19 18 16 41 41 H 1.08992 * 110.37209 * 142.96746 * 24 12 11 42 42 H 1.09003 * 110.36367 * 265.17811 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0680 -2.6655 2.4169 9 6 1.6738 -4.0667 2.5835 10 1 0.6703 -4.2327 2.1917 11 6 1.7568 -4.4845 4.0667 12 7 2.2936 -5.8527 4.1054 13 16 2.5931 -6.7337 5.4753 14 8 3.5714 -7.7024 5.1235 15 8 2.7725 -5.7936 6.5256 16 6 1.1219 -7.6269 5.8529 17 1 0.2522 -7.5270 5.2204 18 6 1.0814 -8.4542 6.9551 19 7 2.1406 -8.5763 7.7249 20 14 -0.4785 -9.4006 7.3558 21 1 -1.5192 -9.0913 6.3426 22 1 -0.1912 -10.8574 7.3408 23 1 -0.9649 -9.0058 8.7021 24 6 2.5221 -6.3101 2.7227 25 6 2.6951 -5.0098 1.8946 26 1 2.4340 -5.1716 0.8488 27 9 3.9970 -4.5114 2.0129 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 2.6275 -2.2367 3.0830 38 1 2.4224 -3.8099 4.6052 39 1 0.7631 -4.4635 4.5140 40 1 2.1123 -9.1585 8.5002 41 1 3.4249 -6.9184 2.6685 42 1 1.6624 -6.8757 2.3633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:46 Heat of formation + Delta-G solvation = -216.478979 kcal Electronic energy + Delta-G solvation = -28508.711771 eV Core-core repulsion = 24143.991215 eV Total energy + Delta-G solvation = -4364.720556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.119 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.48664 -40.91326 -38.40357 -36.87548 -35.33628 -34.62547 -34.05086 -33.77532 -33.12694 -29.34939 -28.42696 -27.66450 -27.60830 -26.18287 -23.17150 -22.25927 -20.86750 -20.28394 -18.89192 -18.45246 -17.79706 -16.96445 -16.55212 -16.30448 -16.23002 -15.48305 -15.08121 -14.96064 -14.76831 -14.68781 -14.42566 -14.30010 -13.84945 -13.68456 -13.29845 -12.77458 -12.65103 -12.52679 -12.45534 -12.14283 -12.14132 -12.04846 -11.91511 -11.79102 -11.52577 -11.30583 -11.27242 -11.25724 -10.99848 -10.62305 -10.56907 -10.44817 -10.37326 -10.26610 -10.21493 -9.31073 -9.28929 -9.01334 -8.34797 -6.75559 -5.38570 1.88309 2.16036 2.68209 3.02409 3.10865 3.17728 3.87379 4.02315 4.21865 4.26480 4.46450 4.51409 4.57503 4.63776 4.65271 4.73849 5.00193 5.20725 5.22474 5.28233 5.28554 5.40922 5.43331 5.51912 5.61422 5.66073 5.73028 5.77799 5.85749 5.88498 6.05158 6.05563 6.07811 6.18469 6.27916 6.36065 6.62143 7.25123 7.27086 7.29317 7.91724 8.22943 8.83291 10.18279 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024173 B = 0.002804 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.051839 B = 9982.123861 C =10368.369798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.363 6.363 6 C 0.655 3.345 7 O -0.569 6.569 8 N -0.696 5.696 9 C 0.130 3.870 10 H 0.125 0.875 11 C 0.121 3.879 12 N -1.017 6.017 13 S 2.727 3.273 14 O -0.996 6.996 15 O -0.997 6.997 16 C -1.019 5.019 17 H 0.104 0.896 18 C 0.132 3.868 19 N -0.845 5.845 20 Si 0.922 3.078 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.271 1.271 24 C 0.097 3.903 25 C 0.065 3.935 26 H 0.107 0.893 27 F -0.198 7.198 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.412 0.588 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.291 0.709 41 H 0.096 0.904 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.241 15.108 -15.214 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.278 6.278 6 C 0.409 3.591 7 O -0.459 6.459 8 N -0.355 5.355 9 C 0.024 3.976 10 H 0.142 0.858 11 C -0.006 4.006 12 N -0.852 5.852 13 S 2.828 3.172 14 O -0.986 6.986 15 O -0.987 6.987 16 C -1.152 5.152 17 H 0.122 0.878 18 C -0.086 4.086 19 N -0.475 5.475 20 Si 0.746 3.254 21 H -0.186 1.186 22 H -0.196 1.196 23 H -0.196 1.196 24 C -0.030 4.030 25 C 0.026 3.974 26 H 0.125 0.875 27 F -0.178 7.178 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.248 0.752 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.606 14.836 -14.977 21.241 hybrid contribution -1.077 -0.453 0.413 1.239 sum -3.683 14.383 -14.564 20.797 Atomic orbital electron populations 1.22523 0.93939 1.05173 1.02460 1.22075 0.94393 0.91503 0.82102 1.21863 1.02326 0.92538 1.03088 1.22517 1.01653 1.03546 0.96373 1.86316 1.71475 1.23537 1.46448 1.17999 0.78568 0.80477 0.82085 1.90892 1.41299 1.70569 1.43099 1.44528 1.55225 1.11652 1.24055 1.22681 0.99801 0.78195 0.96908 0.85762 1.21665 1.00455 0.84932 0.93594 1.59268 1.81637 1.24102 1.20170 1.00299 0.75579 0.72177 0.69107 1.93367 1.61767 1.60604 1.82896 1.93364 1.87807 1.64831 1.52722 1.30596 1.20838 1.42728 1.21079 0.87771 1.24767 0.97847 0.93233 0.92751 1.69893 1.29060 1.34029 1.14501 0.86105 0.81139 0.79170 0.78992 1.18563 1.19567 1.19575 1.22495 1.03493 0.95006 0.81986 1.23245 0.78770 0.94210 1.01183 0.87477 1.92809 1.38671 1.88811 1.97558 0.92129 0.91202 0.89260 0.91426 0.90182 0.91427 0.89297 0.91202 0.92116 0.75204 0.90626 0.89927 0.89819 0.88544 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 8.37 37.16 0.31 -1.35 16 2 C 0.14 1.28 1.13 -90.62 -0.10 1.18 16 3 C -0.14 -0.96 8.85 37.16 0.33 -0.63 16 4 C -0.18 -1.69 8.37 37.16 0.31 -1.38 16 5 O -0.36 -4.23 9.94 -40.32 -0.40 -4.63 16 6 C 0.66 8.38 8.06 54.05 0.44 8.82 16 7 O -0.57 -8.03 11.57 -19.28 -0.22 -8.26 16 8 N -0.70 -8.40 4.80 -56.94 -0.27 -8.67 16 9 C 0.13 1.68 3.18 -66.10 -0.21 1.47 16 10 H 0.12 1.48 7.62 -51.93 -0.40 1.08 16 11 C 0.12 1.88 6.74 -3.06 -0.02 1.86 16 12 N -1.02 -19.60 3.70 -111.29 -0.41 -20.01 16 13 S 2.73 70.54 5.22 -107.50 -0.56 69.98 16 14 O -1.00 -28.50 17.34 -57.17 -0.99 -29.49 16 15 O -1.00 -28.34 17.60 -57.17 -1.01 -29.34 16 16 C -1.02 -27.18 9.75 30.60 0.30 -26.88 16 17 H 0.10 2.53 7.81 -52.49 -0.41 2.12 16 18 C 0.13 3.61 5.46 -17.82 -0.10 3.51 16 19 N -0.85 -24.43 13.19 55.43 0.73 -23.70 16 20 Si 0.92 20.13 29.54 -169.99 -5.02 15.10 16 21 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 C 0.10 1.53 6.92 -2.41 -0.02 1.51 16 25 C 0.06 0.88 4.72 -24.47 -0.12 0.77 16 26 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 27 F -0.20 -3.10 16.82 2.25 0.04 -3.06 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 1.00 5.88 -51.93 -0.31 0.70 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 1.02 5.88 -51.93 -0.31 0.71 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.41 4.45 8.45 -40.82 -0.34 4.11 16 38 H 0.08 1.16 7.70 -51.93 -0.40 0.76 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.29 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.10 1.61 7.78 -51.93 -0.40 1.20 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -35.44 363.43 -7.45 -42.89 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.93 Total: 4.86 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 1.12 Total: -11.13 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.05 Total: -52.39 kcal Atomic # 8 Polarization: -69.10 SS G_CDS: -2.62 Total: -71.72 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.04 Total: -3.06 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 70.54 SS G_CDS: -0.56 Total: 69.98 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.44 -7.45 -42.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.588 kcal (2) G-P(sol) polarization free energy of solvation -35.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds